Transcript — View — Lotus Base

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LotjaGi5g1v0324500.2

Overview

Field	Value
Gene ID	LotjaGi5g1v0324500
Transcript ID	LotjaGi5g1v0324500.2
Related isoforms 2	LotjaGi5g1v0324500.1 LotjaGi5g1v0324500.3
Lotus japonicus genome version	Gifu v1.2
Description	DUF1764 domain protein; TAIR: AT5G11760.1 stress response protein; Swiss-Prot: sp\|Q92346\|YDH1_SCHPO Uncharacterized protein C6G9.01c; TrEMBL-Plants: tr\|A0A151UAF8\|A0A151UAF8_CAJCA Uncharacterized protein C6G9.01c; Found in the gene: LotjaGi5g1v0324500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:64266134..64267617) extracted from Lotus japonicus Gifu genome v1.2.

CTTAGCAGAGCCCAAAGTCGAATATTGCGTTGCCCTCCGTCGCCGCTGTTGGATTGTTGGTCGCGACATTGTCGCTCTGT GCCCACCATTGTCTTAGGTTCGGTATTTATACCTGTCACCTTCATGATTTTGTTTCTTCTGCTTACTTTGATCGTTGGAA TTTGAATTCCATACAGTAGCATAATGATTGTGTTCAATGACCTGAGTATGGTGGTTTGGTTGTTTTGAACATTCACTTAG GTTTCATGCTTAGCAATTGATGCCGACCAACTGTTTGATGTAAATCCTTATCAATTGTTGCTCTCGTTCTATTTGATGTT TGTTTTCTCTTGCTTAGTCCTGAACCAGCTTGGAAGCATTGTTATTGTAATGAACTAATGAGACTATGTTTTAGGTGCGG TGCATTTGTTCAATCATTTGTGAATTGTTGCAGCTACTTTGTTGTAGAAGAGTAGGCTCGGTGGGCTTTAAGTGTGATGC TTTTATTTTTATGCTTATTGATCATTTCAGTTCTAACAAAATTTGCAACATGGCATGCAGCTTTGTTTGCACTCCGATGA CGAAGAAGAGTTCGAAAACGACCCCTAGTTGGTTGCAAGAACATATTGTTGTGGAAGAGGCAAAACCCTCGTCTGTAATA AGGGCAGGTAATGAAATTGATGAAATATTTGCTGGTAAAAAGAGGAAAAAAGATGAAGTGGGGAAGAGTGGAAAACCTGA TGAAGTAACTATGACAACCGAGAAAGTAAAGAAGAAGAAAAACAATAAGAAGAAAACTGATAGGCCAGATGATGGTGAAT TTGTAGACCGACCTTCGCGGCCAAGAAAGAAAACGCAGGATGGACTTTCCATTTATACTGAGGAGGAGTTAGGTATTAAT AAACAGGATGCTGGAAGTACCCCACTCTGCCCATTCGATTGCTCTTGTTGTTTTTGATGGGTAGCTGCACAACAATTTGC ACTCTCAATTCCTTGGTTCAGTGTACAATGGTTTTATCATTCACTTACAGTTTTGGATTTATAAGCCAGGGCCCCAGGGG AGTTGCTTTTTCCTTTATTTATGGTTGGGCTTCTGGCTTGAGTCATCTTGTCCTGAGGTTGAGTTCTTTAGATCTACATA TGATTCCATATTTAGGTGGTCAAAGAGGTTACTGAAGTTTTGAATTTTGAAGCATGTTATGTTTCTTTCACTTTGTATTA AAGTATATAGTGAGATGAGATGTTGAAAATTCAAAGCAGCAACCATCTCATTTTTCTTTTGTTCTGTTTTTGCTAAAGTC ATTGAAATGGACTGAGGATGGGTACATCATTCATGCTACAAGTACCTGAAGATAGTGGAGAAAGTTGGAAACATAATGTA GCAAGTGCAAGAGGATGGTTACTTCTGTAAAAAGGTAATTATACCTTTACTACAATGAAATGTCTAACTCTCTTGCCTTT GATGTTTCTGTGTAAAAATATAAAATTAATTTTTGTTTGAAAAT

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0324500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGAAGAAGAGTTCGAAAACGACCCCTAGTTGGTTGCAAGAACATATTGTTGTGGAAGAGGCAAAACCCTCGTCTGT AATAAGGGCAGGTAATGAAATTGATGAAATATTTGCTGGTAAAAAGAGGAAAAAAGATGAAGTGGGGAAGAGTGGAAAAC CTGATGAAGTAACTATGACAACCGAGAAAGTAAAGAAGAAGAAAAACAATAAGAAGAAAACTGATAGGCCAGATGATGGT GAATTTGTAGACCGACCTTCGCGGCCAAGAAAGAAAACGCAGGATGGACTTTCCATTTATACTGAGGAGGAGTTAGGTAT TAATAAACAGGATGCTGGAAGTACCCCACTCTGCCCATTCGATTGCTCTTGTTGTTTTTGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0324500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTKKSSKTTPSWLQEHIVVEEAKPSSVIRAGNEIDEIFAGKKRKKDEVGKSGKPDEVTMTTEKVKKKKNNKKKTDRPDDG EFVDRPSRPRKKTQDGLSIYTEEELGINKQDAGSTPLCPFDCSCCF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34066 View details on PTHR34066 Search for proteins/transripts with this domain View external data on PTHR34066	1	126	126	2.7E-39	IPR013885 Show description in modal box View details on IPR013885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF08576 View details on PF08576 Search for proteins/transripts with this domain View external data on PF08576	30	126	97	7.8E-30	IPR013885 Show description in modal box View details on IPR013885 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	42	101	60	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	42	64	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	72	98	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0324500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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