Transcript — View — Lotus Base

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LotjaGi5g1v0324500.3

Overview

Field	Value
Gene ID	LotjaGi5g1v0324500
Transcript ID	LotjaGi5g1v0324500.3
Related isoforms 2	LotjaGi5g1v0324500.1 LotjaGi5g1v0324500.2
Lotus japonicus genome version	Gifu v1.2
Description	DUF1764 domain protein; TAIR: AT5G11760.1 stress response protein; Swiss-Prot: sp\|Q92346\|YDH1_SCHPO Uncharacterized protein C6G9.01c; TrEMBL-Plants: tr\|I1KLM2\|I1KLM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0324500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:64266181..64267414) extracted from Lotus japonicus Gifu genome v1.2.

GAGTATGGTGGTTTGGTTGTTTTGAACATTCACTTAGGTTTCATGCTTAGCAATTGATGCCGACCAACTGTTTGATGTAA ATCCTTATCAATTGTTGCTCTCGTTCTATTTGATGTTTGTTTTCTCTTGCTTAGTCCTGAACCAGCTTGGAAGCATTGTT ATTGTAATGAACTAATGAGACTATGTTTTAGGTGCGGTGCATTTGTTCAATCATTTGTGAATTGTTGCAGCTACTTTGTT GTAGAAGAGTAGGCTCGGTGGGCTTTAAGTGTGATGCTTTTATTTTTATGCTTATTGATCATTTCAGTTCTAACAAAATT TGCAACATGGCATGCAGCTTTGTTTGCACTCCGATGACGAAGAAGAGTTCGAAAACGACCCCTAGTTGGTTGCAAGAACA TATTGTTGTGGAAGAGGCAAAACCCTCGTCTGTAATAAGGGCAGGTAATGAAATTGATGAAATATTTGCTGGTAAAAAGA GGAAAAAAGATGAAGTGGGGAAGAGTGGAAAACCTGATGAAGTAACTATGACAACCGAGAAAGTAAAGAAGAAGAAAAAC AATAAGAAGAAAACTGATAGGCCAGATGATGGTGAATTTGTAGACCGACCTTCGCGGCCAAGAAAGAAAACGCAGGATGG ACTTTCCATTTATACTGAGGAGGAGTTAGGTATTAATAAACAGGATGCTGGAAGTACCCCACTCTGCCCATTCGATTGCT CTTGTTGTTTTTGATGGGTAGCTGCACAACAATTTGCACTCTCAATTCCTTGGTTCAGTGTACAATGGTTTTATCATTCA CTTACAGTTTTGGATTTATAAGCCAGGGCCCCAGGGGAGTTGCTTTTTCCTTTATTTATGGTTGGGCTTCTGGCTTGAGT CATCTTGTCCTGAGGTTGAGTTCTTTAGATCTACATATGATTCCATATTTAGGTGGTCAAAGAGGTTACTGAAGTTTTGA ATTTTGAAGCATGTTATGTTTCTTTCACTTTGTATTAAAGTATATAGTGAGATGAGATGTTGAAAATTCAAAGCAGCAAC CATCTCATTTTTCTTTTGTTCTGTTTTTGCTAAAGTCATTGAAATGGACTGAGGATGGGTACATCATTCATGCTACAAGT ACCTGAAGATAGTGGAGAAAGTTGGAAACATAATGTAGCAAGTGCAAGAGGATGGTTACTTCTGTAAAAAGGTAATTATA CCTTTACTACAATGAAATGTCTAACTCTCTTGCC

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0324500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGACTATGTTTTAGCTTTGTTTGCACTCCGATGACGAAGAAGAGTTCGAAAACGACCCCTAGTTGGTTGCAAGAACA TATTGTTGTGGAAGAGGCAAAACCCTCGTCTGTAATAAGGGCAGGTAATGAAATTGATGAAATATTTGCTGGTAAAAAGA GGAAAAAAGATGAAGTGGGGAAGAGTGGAAAACCTGATGAAGTAACTATGACAACCGAGAAAGTAAAGAAGAAGAAAAAC AATAAGAAGAAAACTGATAGGCCAGATGATGGTGAATTTGTAGACCGACCTTCGCGGCCAAGAAAGAAAACGCAGGATGG ACTTTCCATTTATACTGAGGAGGAGTTAGGTATTAATAAACAGGATGCTGGAAGTACCCCACTCTGCCCATTCGATTGCT CTTGTTGTTTTTGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0324500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLCFSFVCTPMTKKSSKTTPSWLQEHIVVEEAKPSSVIRAGNEIDEIFAGKKRKKDEVGKSGKPDEVTMTTEKVKKKKN NKKKTDRPDDGEFVDRPSRPRKKTQDGLSIYTEEELGINKQDAGSTPLCPFDCSCCF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SignalP_GRAM_POSITIVE	SignalP-TM View details on SignalP-TM Search for proteins/transripts with this domain	1	24	24	-	–
PANTHER	PTHR34066 View details on PTHR34066 Search for proteins/transripts with this domain View external data on PTHR34066	12	137	126	3.6E-39	IPR013885 Show description in modal box View details on IPR013885 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF08576 View details on PF08576 Search for proteins/transripts with this domain View external data on PF08576	41	137	97	1.0E-29	IPR013885 Show description in modal box View details on IPR013885 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	53	123	71	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	53	75	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	83	109	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0324500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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