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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0325500 |
| Transcript ID | LotjaGi5g1v0325500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MAR-binding filament-like protein 1 isoform 1; TAIR: AT2G14910.1 MAR-binding filament-like protein; Swiss-Prot: sp|Q96NZ1|FOXN4_HUMAN Forkhead box protein N4; TrEMBL-Plants: tr|A0A0B2PBZ7|A0A0B2PBZ7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0325500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64319546..64322652) extracted from Lotus japonicus Gifu genome v1.2.
TGCTAATGAAATAAATTTATTTATCAAAGCTCTTTGTCCCGTTTTCTGTGTGTTTTTATCACCCACAGCCACAATTAAAT CAACTCTTTCCGCGCTTGTTGTCTTCTGTTCTGTGTTTTATTATTATTGTGGCTACATAGAGACAGAGAGAAGAGAGGGA AGGGAAGAGTGGGTGTATTGGTGGTTGTTCTTCATGGCAACCTCCCTTTCCCTCTTCTCCTCTCTTCCTCTTCCTCTTTT CCACCTCCGCCCTTCACCCACCTCATCCCTCTCTTTCTCTCCTCTCCGCCACCACTCAAACCCTACAAAATCGAAACCCC CTTTCCTGGTTCTTGCTTCCTCAACCCCCTCCTTCGGGGATTTCACCTCCAAACCCAAGGTACATCATGTTCAATACTAT GTTTATCAAATACAATAGTGAATTTGACTATTTGATTGTTATTCTTCTAGAAATCAGTTCTTAGGGAGTTGATACAAGAG ATAGAGCCTCTGGATGTGAGCCACATCCAGAAAGATGTTCCGCCAACAACAGCAGATGCCATGAAAAGGACTATATCTGG TATGTTGGGTCTGCTTCCGTCTGATCAATTCCATGTTGTCATTGAGGCCTTGTGGGAACCCCTCTCCAAGTTACTCATTT CTTCAATGATGACTGGGTAAGTGTCATACTGTCATGTCTATGTCTATGTCATAAACTAGAAAAATTTGTATATTATCTCT ATGGAGCCTGCAGGGTTGTTATTATGGTTGTAGGAGTATTATTTTAATAAATGGACGTGTTGTTTGGAGAAGCTGGGAGG GACATAATATAATATTGGCGTCACAGCTATTTATTTGAAACAATGTATGTTAATATTTTATAAACCCCCAAAAATTTCTG AAGAATGTTACTCTTTTCATGCATGACTAAGTAATTTTCATCCAACTTGAGGGAATATGAAAATCTTTCTTCGTGTATTG CAGCTACACGCTGCGCAATGCTGAATATAGGCTTTGTCTTGAAAAAAACCTTGATATGTGTGAAAGAGATCTAGAGAAGC CAAAGGCAGAAAGCACTCCAATGGACCTACAAGGATTGCTGCATGACAGTGTAAATGTAATCGACTTTGGGAGAAAGAGC AATTTGTCTTCCAAAGTTGAAAAGGTTCATGAGGATGTTGATATTCAAGACCTTGGTGAAATATCTTCAGAAGCACAGCA ATATATTCTCAATTTGCAATCTCGTTTGTCTTCAATGAAAAAGGTATACTGTAAAATAATGGATCCTTCCTCGATATTAG AGAAGACTAGGGTCATGGGATTCATGGTGCGCAGTGAATGGTCAATGATATTTATTTTGCATGGGACATTGTTAAATTCT TGCTTGTCACATATCTCGTGGTATGCTTCATTCTATAATAATGTTGGATATGCTCTCTGTTTTGTCTCTAGGCAATAATT GGTCTGCATTCGAGTTTCTTAATTGCAAATAAGCCACTATTAGAATAAACTCGTTTCTCATCTTAGTTTCTTTTCCTTTT TTGGTGGCCACATTTTAAAGGAACTGCATGAAGTGAAGAGGAAAAATGCTGCTCTTCAAATGCAACAGTTTGTTGGAGAA GAAAAGAATGATTTATTGGATTACTTGAGATCACTTCAACCTGAACAGGTTTTTCCTTTTTCAAAAACGTCCATAGTTTT CTTTTTCTGTACATGCTATATAATGGCTACAAAGGAGCATGGTGCAACTCTATCTTGGGTTCATTTGTCATACTAGCCTC TGTCTTCATGTATTACTTGTAAAATTACCAACACCGACAAATTGCCTATCAAAAAAAAAAAAAAAACCAACACCGACAAA TTGTCTCTACTATTATACTGTTGTATTGCTGTACTTCGTATGCAATGACTAGGGGGAACTTAATATTTGAGTATTGTGAT AATTTAGTGTTTTCTGTTTTGGTAGAAAAATATCTGTTGCTTTTGTCTGAAAAATATATGCTGCTTTCAGTTAATTTAGT TGGATTTGTATATGCATGATGAGCAGGTGGCTCAGCTATCAGAATTTACATCCCCTGAGCTTAAGGAAATCATCATCTCT GTTGTCCACGGTCTTCTTGCTACCCTTTCTCCTAAGATGCATTCTAAACCTTCAACTATGTCAGAGAATGCAACAATTGG TACAGCAAATGCTGGGAGTGAGGATTGTGCGGAGGTTGTTGAGAACTCTTCAATTCAGTTTCACCCTGTTATTTCATTAA CTAGGGACTATCTTGCTCGCCTGCTATTTTGGTCTGTGTTTTTCTCCTCTTGATTATGTTCCTTGTTTCTATATGTATTC TATTTATTTTTTATGATGCAAGAACGAGTATTCAGGACCTGGAGTTAATCATAATGGTAATGGGATACAAAATTTACTAT ATGCTTGAACTTGAAAGATGATTTGGAATTTTTGAAGCTATTAATACCCTTGTTGTGCTACTGTTCTGAATAAAACTAAC TACTACTTATTGACACCTCCCCCTAAAGGTGCATGCTGTTGGGACACTATCTCAGAGGCCTTGAGTACCGTGTAGATTTG ACGGAACTGCTATCCTTGACAAGTGATGCTGAGAACAATGGGAATGAGCAAATTGCTTGAGTGGTTTCGACAGTTTTGGT GGTTCAATGTGAGCAAATCTCGTCAGCTGAGAACTATGGGAATGAGCAAATTGCTTGAATGGTTTCGACTAGTGGCTTCA AGATGATTTTTCCTTTCAACACGAATTGCTAGTCACTTCTGCTGAGGAGATTTCACTGTTTGATGCTTATGGAAGAATAA ATCTTTCCTGACACAAACAATTCTCAGGGCGATAAGAAGGATTTGGCATTTGTTGTTGCTGGGTCATTTGTTGTATTATA GAAGATGAAAATGTTGTGACTCACTACAGCACGATATGAGTAGATTGTCTATCAGTTTATATCTGAACAATTAAGTTACT AGTTAGGTTTGTCTTGATTTTATACTTTTGATTTCTGCCATTTGATGTCTTGACCCAGTTTTACATAGTTCATAAAGTTT TTATAACAAGTCCTCTCATGAAATAGGCCTGACAGAAGAGAAAAAAAAAATACTAGCATAGCAAATC
CDS sequence (LotjaGi5g1v0325500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCTCCCTTTCCCTCTTCTCCTCTCTTCCTCTTCCTCTTTTCCACCTCCGCCCTTCACCCACCTCATCCCTCTC TTTCTCTCCTCTCCGCCACCACTCAAACCCTACAAAATCGAAACCCCCTTTCCTGGTTCTTGCTTCCTCAACCCCCTCCT TCGGGGATTTCACCTCCAAACCCAAGAAATCAGTTCTTAGGGAGTTGATACAAGAGATAGAGCCTCTGGATGTGAGCCAC ATCCAGAAAGATGTTCCGCCAACAACAGCAGATGCCATGAAAAGGACTATATCTGGTATGTTGGGTCTGCTTCCGTCTGA TCAATTCCATGTTGTCATTGAGGCCTTGTGGGAACCCCTCTCCAAGTTACTCATTTCTTCAATGATGACTGGCTACACGC TGCGCAATGCTGAATATAGGCTTTGTCTTGAAAAAAACCTTGATATGTGTGAAAGAGATCTAGAGAAGCCAAAGGCAGAA AGCACTCCAATGGACCTACAAGGATTGCTGCATGACAGTGTAAATGTAATCGACTTTGGGAGAAAGAGCAATTTGTCTTC CAAAGTTGAAAAGGTTCATGAGGATGTTGATATTCAAGACCTTGGTGAAATATCTTCAGAAGCACAGCAATATATTCTCA ATTTGCAATCTCGTTTGTCTTCAATGAAAAAGGAACTGCATGAAGTGAAGAGGAAAAATGCTGCTCTTCAAATGCAACAG TTTGTTGGAGAAGAAAAGAATGATTTATTGGATTACTTGAGATCACTTCAACCTGAACAGGTGGCTCAGCTATCAGAATT TACATCCCCTGAGCTTAAGGAAATCATCATCTCTGTTGTCCACGGTCTTCTTGCTACCCTTTCTCCTAAGATGCATTCTA AACCTTCAACTATGTCAGAGAATGCAACAATTGGTACAGCAAATGCTGGGAGTGAGGATTGTGCGGAGGTTGTTGAGAAC TCTTCAATTCAGTTTCACCCTGTTATTTCATTAACTAGGGACTATCTTGCTCGCCTGCTATTTTGGTGCATGCTGTTGGG ACACTATCTCAGAGGCCTTGAGTACCGTGTAGATTTGACGGAACTGCTATCCTTGACAAGTGATGCTGAGAACAATGGGA ATGAGCAAATTGCTTGA
Protein sequence (LotjaGi5g1v0325500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSLSLFSSLPLPLFHLRPSPTSSLSFSPLRHHSNPTKSKPPFLVLASSTPSFGDFTSKPKKSVLRELIQEIEPLDVSH IQKDVPPTTADAMKRTISGMLGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLRNAEYRLCLEKNLDMCERDLEKPKAE STPMDLQGLLHDSVNVIDFGRKSNLSSKVEKVHEDVDIQDLGEISSEAQQYILNLQSRLSSMKKELHEVKRKNAALQMQQ FVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKEIIISVVHGLLATLSPKMHSKPSTMSENATIGTANAGSEDCAEVVEN SSIQFHPVISLTRDYLARLLFWCMLLGHYLRGLEYRVDLTELLSLTSDAENNGNEQIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 25 | 9 | - | – | |
| Phobius | 26 | 378 | 353 | - | – | |
| PANTHER | 28 | 375 | 348 | 5.6E-167 | – | |
| PANTHER | 28 | 375 | 348 | 5.6E-167 | – | |
| Pfam | 66 | 147 | 82 | 1.5E-20 | ||
| Coils | 212 | 239 | 28 | - | – | |
| Pfam | 248 | 363 | 116 | 8.2E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0325500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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