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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0326100 |
| Transcript ID | LotjaGi5g1v0326100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G19500.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LT67|BH113_ARATH Transcription factor bHLH113; TrEMBL-Plants: tr|C0JP32|C0JP32_LOTJA Putative basic helix-loop-helix protein BHLH15; Found in the gene: LotjaGi5g1v0326100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64363368..64365854) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTCTCTTTTTCTCTTTCTTTTCTTTTTCAAGTTTAACCAAAATCAATTAACATGATTACAAATGTCTCTTACACTTT CTGCCACTTCACACTAGTCACTCCCTTTTTATATAACCTTCTCCTTCTTGATTCTCTTCTCAAAAGCTAGCCCCTCCTCC AAAATGCTCTCACCTTTCCCTTTCAATCTTTGAAACAAAACAATTAATCCATTCCAAAAGTTCAGAGCATTTGTTTGTTT TTTTGCTTTTGTTTTGATGGCTGCCAAGGAGGAATTTGAAGTGGACCATGTGACCACACCCATCACTCCAGGGACCAGTT TCTCTCAGCTACTATTCGGAGATGACGATGATGTTGTTCATGATGAGAAAGCATTTGCTTTTGGTACAGTGGACCAGACG TTCAACAACAACAACAACAACAACCTCTCCACCAATTCCAGTCTTTTCTCCATTCACAACACCCCCAAAATGCTCTGCTT TGGCAACAACTATCAAAATGAAGGGGACCTCATGAACAATGTAACCCCTCAGAAATCATCCATCATCACTTCAAGTGACA ACAATTCTTCATCTGCTTCTAATTCCTGCAACACCAGCTTCAATTATTCCTTACCTATGTCCAATGTATGTGTATATCAA TTGTTAATTAGCAATTGGAGAATGATCTTGGTGTTGTTAATGTTGATTTCATATTTTTTTTCTGTGTTTTTTTGGTTGAA GAGCTTGCAGAAAAAGCGGAATGGGTCGGGACAGGAACCGGGGACCACGGCAAACGTTGGACGCCAGAAACCTCCGTATA AGAAAACCAAAGCAGAGAACCCCACTTCCACCGGACATGCAAAGGTGAGCAAAATCAGTTACCAATCGGTTGCATGTCCT TCTCTTTTACTAATTTTCTGTCTCTCTTGAACTAAACACTGCAGTAATAGCTGCATGCCCTGTCCTTTTCTTAATAAACA ATTCATATGATTTTCATAAGTAGGATTATATTATATTATATAGTTTTTCATATAGTTTGATGAATTAATTACTTGGAATA GAAGAGGAAGGAGAAGCTAGGGGAACGAATTGCAGCACTACAGCAACTTGTTTCTCCCTTTGGCAAGGTGAGTGAAATCC AGCATTTTAGAATTGAGAATTTGTAAATTTTTGTGATCATTGATTGAATTGTGAGGGCTAGCCTCGACACAACGGTATGG TTGTTGTCATGTGATTTTCTGGTGAATAAGCCTCTTGTAAAAATTTAACACAAGATTGTTTACATTAGATTCACAAAGTG GGTTTAGCTTTCCTTGTAGCGAGAGGGTTTGTATGTTTTTTTGAATTATTGAATTGAGGTTGATTTACAAAATTGAAACT GCATGTTCTGCAGACAGATACAGCTTCAGTGCTTCACGAGGCCACTGGTTATATAAAATTTCTACAAGATCAAGTTCAGG TTCTGTGCTCCCCTTATCTGCAACGCTTGCCTTCTTGTTCACAACCTGTAAGTCCCATTTCTCATATCATCATTACAATT GATTCTGAATTCAAACTTGTGACAGCTTCTAGCTGTCAGAAGAATTGATTTTTGGGAAGGGAGAAAGTGATTCAAAGATA CTACTAATGTTATTATTATTTTGTTCAAAACAAAATCTTCATAGAAGTTGCAGGGCCCAGTTGATAGGGACAATACTGTA CTTTGAAAATGTTGACCCGGGTTAACTGTGACAGTTTGCCATTTAAGGTAACTCTTGATGACTTCATATTTTTAACGTGT GTGCGTTATTTCAGGGGGACGGAGATAACGATGGAGGAGAGGAAGAAGCAGAGAAGCTGAACCTCAGGAGCAGGGGACTC TGCTTGATCCCTGTGTCCTGCACCGTACACGTGGCAAGCACCAACGGTGCTGATTTCTGGTCACCTGGGAACAATGTGAA GCAGTGAAATTAGCCATGAATCAATGAATCATTTTCAAATATTTGTAATCTTCTTGGGAAATTGGGGTTTCTGTGTCTGC CCAAATTGGAGATGGAAGCATCACAAGGTAACCTGATAGAAAAGGTAAAGAAGGATGACAATTAACAAGTGGGGTTTGAA GTTCACTCATGGAGGTACAAATCAAAGGTCATGATTTTGTCTTTAATTATGTAACATCTCTTTTGGGGGGTCCTATTCTA TAGAAGGAAGAACCTTTTAAGGAAGAAAGGAAATAGTTTATGCTAGGATTTAGGGATGTGTGGCCTTGAACTAGAAGTCT AGGATGCCATATGTTTTCAATTATATATACTTTGTCTATGTAAATTTCGGTAGGCAATTAAATGAAAATATTTCAAAAGG GTTAGATTTTTTATAGCAAGGAAAAACAAACAATAATCAAGTTTTTCAAGTGTTATATTTCAAAAGTGTCTCTTAGAATT CAGATTTGGTTTAACTCAACTTAAAAAACTAGATTAGTGCATGGTGATGATTGTTCTACCCTTGTCCCTTTATAATGACT ATTCTTA
CDS sequence (LotjaGi5g1v0326100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCAAGGAGGAATTTGAAGTGGACCATGTGACCACACCCATCACTCCAGGGACCAGTTTCTCTCAGCTACTATT CGGAGATGACGATGATGTTGTTCATGATGAGAAAGCATTTGCTTTTGGTACAGTGGACCAGACGTTCAACAACAACAACA ACAACAACCTCTCCACCAATTCCAGTCTTTTCTCCATTCACAACACCCCCAAAATGCTCTGCTTTGGCAACAACTATCAA AATGAAGGGGACCTCATGAACAATGTAACCCCTCAGAAATCATCCATCATCACTTCAAGTGACAACAATTCTTCATCTGC TTCTAATTCCTGCAACACCAGCTTCAATTATTCCTTACCTATGTCCAATAGCTTGCAGAAAAAGCGGAATGGGTCGGGAC AGGAACCGGGGACCACGGCAAACGTTGGACGCCAGAAACCTCCGTATAAGAAAACCAAAGCAGAGAACCCCACTTCCACC GGACATGCAAAGAAGAGGAAGGAGAAGCTAGGGGAACGAATTGCAGCACTACAGCAACTTGTTTCTCCCTTTGGCAAGAC AGATACAGCTTCAGTGCTTCACGAGGCCACTGGTTATATAAAATTTCTACAAGATCAAGTTCAGGTTCTGTGCTCCCCTT ATCTGCAACGCTTGCCTTCTTGTTCACAACCTGGGGACGGAGATAACGATGGAGGAGAGGAAGAAGCAGAGAAGCTGAAC CTCAGGAGCAGGGGACTCTGCTTGATCCCTGTGTCCTGCACCGTACACGTGGCAAGCACCAACGGTGCTGATTTCTGGTC ACCTGGGAACAATGTGAAGCAGTGA
Protein sequence (LotjaGi5g1v0326100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAKEEFEVDHVTTPITPGTSFSQLLFGDDDDVVHDEKAFAFGTVDQTFNNNNNNNLSTNSSLFSIHNTPKMLCFGNNYQ NEGDLMNNVTPQKSSIITSSDNNSSSASNSCNTSFNYSLPMSNSLQKKRNGSGQEPGTTANVGRQKPPYKKTKAENPTST GHAKKRKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIKFLQDQVQVLCSPYLQRLPSCSQPGDGDNDGGEEEAEKLN LRSRGLCLIPVSCTVHVASTNGADFWSPGNNVKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 50 | 268 | 219 | 4.7E-62 | – | |
| PANTHER | 50 | 268 | 219 | 4.7E-62 | – | |
| MobiDBLite | 122 | 141 | 20 | - | – | |
| MobiDBLite | 122 | 168 | 47 | - | – | |
| ProSiteProfiles | 154 | 203 | 50 | 11.915 | ||
| SMART | 160 | 209 | 50 | 3.6E-4 | ||
| Gene3D | 161 | 216 | 56 | 1.9E-6 | ||
| CDD | 163 | 208 | 46 | 8.05563E-7 | ||
| SUPERFAMILY | 163 | 216 | 54 | 3.27E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0326100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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