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LotjaGi5g1v0326400.2

Overview

Field Value
Gene ID LotjaGi5g1v0326400
Transcript ID LotjaGi5g1v0326400.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Methylthioribose kinase; TAIR: AT1G49820.1 S-methyl-5-thioribose kinase; Swiss-Prot: sp|Q7XR61|MTK1_ORYSJ Methylthioribose kinase 1; TrEMBL-Plants: tr|A0A151U7P3|A0A151U7P3_CAJCA Methylthioribose kinase; Found in the gene: LotjaGi5g1v0326400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:64378472..64382312) extracted from Lotus japonicus Gifu genome v1.2.

ATTAAGGCTGTCCCTGCCCTCTCTTCCATCCTAGGCAACAACGTCTCCGACTTGTCTGTCAAAGAAGTCGGAGATGGCAA CCTTAACTTTGTCTTCATTCTCCTCAACTCCTCTGGTTCTCTTGTCATCAAACAGGTAATTCATAAATCATGGGCACTTG CAAATTTCGTTTGTTTTTCTGGGGTGTTGAAATTCGTGCTGTTTTTGTAGGCTCTGCCTTATGTTCGTTGCATAGGGGAA TCATGGCCGATGACGAAGGAGAGAGCATATTTTGAGTCTATGGCTTTGAAAGAAGAGTCTCGGTTGTGCCCTGAGCATGT CCCTCAAGTGTATCACTTTGACCGTACCATGTCTTTGATTGCTATGCGTTACATTGAGCCTCCACATATAATTCTTAGGA AAGGGTTGATTGCTGGGATTGAGTATCCTTTGCTGGCTGAGCATATGGCTGATTTCATGGCTAAGACACTCTTCTTTACT TCTCTCCTTTTCCGCACCACTGCTGATCACAAACGGGACGGTATGACCTTTGCCATGTTACTTTGTATTGGAAACATTGA TATCCTGATGTTTTTGTTATTAAGAAAAGAGAACCATTTCTCTGGGTAGAAGATGATTCATGTATACCTTATTACATAAG CTAGCTAGGCTAAGTGCATACTAACTAACAAACTAACGAACTCTTCCTTTTCGACAGAAGATTAATGAAAGAATCACTTA TAAGATTCCACACTTTTCTGTTGACACCAATGCACTCATTGCAAGTTAACAGTGAACATAACTCCTCTTATTGATTGTGA TGGAACAAACATAGTGACTAATGGATGCTCCTGTAGTTGTATGGGCATTGCTTCTTTTGCCTTAATAATTGTTTAAGGGA GATATAGCTAAATAAGTCCATATATATGGTAGAACAATTCTCACTGCTGAGCTAGTTTTTTGGGTAGAATTAGGCCTAAC CCAAATTCTAAATGTGATCATAGCCTATGGATCTGTTTATTGGGTCACCCAAATATGTCCAATCCTGCAAACTTCACTGG AATTCTAAGAAAAATTAAGCTTTATGGATGAAAATGGATGAAAGAAATGATATTATCTTCCTGTTAGTATAAGAAAGGTT ATCACGTATTATCTTTTTATGTCAGCTCGAGGCATGTTTAGCATAAACCTGATCTCATGCTAGTTTCATGCAGTTGGCGA ATATTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGTTGTTTTCTCTGATCCTTACAAAGTTTCTGAATATAATC GTTGGACTTCCCCTCATCTCGATAGTGATGCGGAGGCTGTTCGGGAAGACAATTTGCTGAAGCTTGAAGTTGCTGAGCTC AAATCTAAGTATTATGACTCTCTTTTTTCTCCATTTTATGCAGTAGTTATGTTGTCAGCATTTTGTTTATAAGAATTTAT ATCTGTGCAGGTTCTGTGAGAGGGCTCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTAACTCCTGAA TCAACACAAGTTATTGATCCAGAATTTGCATTCTATGGACCAATAGGGTTTGACATTGGAGCATTTTTGGGAAATTTGAT TTTGGCTTTCTTCTCTCAAGATGGACATGCTGATCAAGCAAATGATCGAAAAGTAGGTCCCCTTTTCTCACATGTCCTTT GCACAGTCCTTTCCTGGGCTCTTCTTTTTAATATGTACTGTATTTCTGGTTATTCTTCATAATCTAACTTAAAAACATGA ATTCTCTGTCTCTTTTTTTTTAATGTCTTAATTTGTATTTAACTTTGGTAGTTTAGTTTCATGGCAGAGATGTCAAGGTA TTTGTACCAGCAATAAAGTTTATGAATTTTGCTTCCTTTGCGTTTATTTATAGTTTTGAAATTCCCTTGTGTTGTCTGCT TGTTTTGTCTATGTTGTGTCAAGAACCGGTGCCTAGTTATCTTAATTCATAGAAGTATCCTTTTGTTTGCATCTCGATGA GGTATCAGAATTACAATTTATACCATTTGAATTTGAAAAGTTACAAACATAGTTTCCGAGAATGTGAGCTCTCTTAGCCC AACACTCGTAACAAGTGAAGACTTGGTAACGGACAGATTCATTTGCATGGTTTGTATTTCGTGTTCAGTGCAAGGTTTGT TAAGAGAAACTGCATTTTAGATTATATAGAGATTGGACAGCTCATACTGACTAGTTTTTAGAAGTTCCCTTCTCTGTTTC TGTTTTTCCTTCTATTTGATCTTTGTTGAGGGTCTCTTATGATTCTATGTTTCGTACTTCTATTTCTTTCTTTGTTTTAA AATTTCGTATTTTATTTAAAAAATTGGAGACCTGATCGGAACTTAGGCTGCTGTTAGCTGAACTAGTACTGTATTGTTTA TCTATTGCTTTATCTTCTCCTAATTTGACAAGATCTTTTCCTTTCAGTTGAGTTACTGTGCATTGCAATGAAAGATAAAT GAAATAATGAGAATTGGCCTTTAAAAATGTAATTTTTAATAATTCCTGAAGAACATTGACTATTGGGGGAAAAGTGTTAT TCTTTGTCTAAAACACTACTTTATGCAGGCATATAAAGAGTGGATTCTTAAGACAATTGAAGACACTTGGGATCTTTTCC ACCAGAAATTCACTGCACTTTGGGATGAGCATAGAGACGGTGCTGGTGAGGCATATCTTCCAGCAATCTATAACAATCCT GAGGTCCAGCTGCTTGTACAGAAGAAATACATGACAGATTTGTTTCATGACAGTCTTGGATTTGGTGCTGCCAAAATGAT AAGGTGAGACTTTTCTTCTCTAATATTTTTTTAGGTTGCAATAATCATGTTTACTAGAAATTCTATATAATTTCTGTATG CTCTATGATTTATTTTTCAATTTTCGATATATAATAATTAATGATCTTACAACTAATAGGGGTACAGATGCATGTAGACA AAATTATTATTTGATCTCCTTCACATCCTTGTCTTGTCATATTATTACTAGTACTTTAATTTCTTGCTCTTAAAAGTTTG ATTTCCTTTTCATAGAAGTATTATTGAAACAAACTTCTCTTCACTAGATATTTGAATTCCTGTGTGTTATGTGTCCAGAG TCAACCAAGATAACTTTCAGTCATAGCCTGAGAGATAACATAATAGAACTGTTAGAAATGTTATATAAAATCATTCATGT TTCTTCACCAAGTAGCTTAAATATTTTTGGTAGTTCATGATATGGTTAATAAGTTGAATTGAGATTGTTCATTTTCCAAG CTTCAAGCCCAATTAGCTCTTACGTGAGGAGACGTGTTACAAAGTGTAAGCTTTTGGGTTAGTTTGTTCATGACAGGAAC GCATCCACCTTAATATGTTTATATTGCAGTGCAGTCTTTTATTGGACCATGAATTTAATACTGGACCATTATGCATCATA TATTCTTATGTTATATTCACTTCACTATATATTATTTTAAAGGAAAAGTAGGTAGATTGGACATTATAATGCTGACAACA CCCTTGATGTGCTAGCTTTGTGTCCTGATCTTAGTAGAGTAGAATGAGTAGGAACTTCATTTGACGATTTGTATGACTAT GTTCATAATGAATGCAAAAATCCATATTTTTGTTAATGCGTCTAACACTTGCATTTTAATTATTTGATTGGCAGGAGAAT TGTTGGGGTGGTACATGTTGCGGATTTTGAGTCAATTACTGATGCTGATAAACGGGCAAATTGTGAAAGGAGGGCGCTTA ATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAAGGAATAGCTGAAATTGTTTCAGCAATCAGGGAATTCTAG T
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0326400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGAAGGAGAGAGCATATTTTGAGTCTATGGCTTTGAAAGAAGAGTCTCGGTTGTGCCCTGAGCATGTCCCTCAAGT GTATCACTTTGACCGTACCATGTCTTTGATTGCTATGCGTTACATTGAGCCTCCACATATAATTCTTAGGAAAGGGTTGA TTGCTGGGATTGAGTATCCTTTGCTGGCTGAGCATATGGCTGATTTCATGGCTAAGACACTCTTCTTTACTTCTCTCCTT TTCCGCACCACTGCTGATCACAAACGGGACGTTGGCGAATATTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGT TGTTTTCTCTGATCCTTACAAAGTTTCTGAATATAATCGTTGGACTTCCCCTCATCTCGATAGTGATGCGGAGGCTGTTC GGGAAGACAATTTGCTGAAGCTTGAAGTTGCTGAGCTCAAATCTAAGTTCTGTGAGAGGGCTCAGGCACTAATACATGGA GATCTACACACTGGTTCTGTGATGGTAACTCCTGAATCAACACAAGTTATTGATCCAGAATTTGCATTCTATGGACCAAT AGGGTTTGACATTGGAGCATTTTTGGGAAATTTGATTTTGGCTTTCTTCTCTCAAGATGGACATGCTGATCAAGCAAATG ATCGAAAAGCATATAAAGAGTGGATTCTTAAGACAATTGAAGACACTTGGGATCTTTTCCACCAGAAATTCACTGCACTT TGGGATGAGCATAGAGACGGTGCTGGTGAGGCATATCTTCCAGCAATCTATAACAATCCTGAGGTCCAGCTGCTTGTACA GAAGAAATACATGACAGATTTGTTTCATGACAGTCTTGGATTTGGTGCTGCCAAAATGATAAGGAGAATTGTTGGGGTGG TACATGTTGCGGATTTTGAGTCAATTACTGATGCTGATAAACGGGCAAATTGTGAAAGGAGGGCGCTTAATTTAGCTAAG ATGCTTCTCAAAGAAAGAAGAAAATTTGAAGGAATAGCTGAAATTGTTTCAGCAATCAGGGAATTCTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0326400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTKERAYFESMALKEESRLCPEHVPQVYHFDRTMSLIAMRYIEPPHIILRKGLIAGIEYPLLAEHMADFMAKTLFFTSLL FRTTADHKRDVGEYCGNVELCRLTEQVVFSDPYKVSEYNRWTSPHLDSDAEAVREDNLLKLEVAELKSKFCERAQALIHG DLHTGSVMVTPESTQVIDPEFAFYGPIGFDIGAFLGNLILAFFSQDGHADQANDRKAYKEWILKTIEDTWDLFHQKFTAL WDEHRDGAGEAYLPAIYNNPEVQLLVQKKYMTDLFHDSLGFGAAKMIRRIVGVVHVADFESITDADKRANCERRALNLAK MLLKERRKFEGIAEIVSAIREF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34273
1 340 340 2.9E-166 –
Gene3D
G3DSA:3.30.200.20
1 45 45 2.0E-13 –
TIGRFAM
TIGR01767
2 337 336 3.8E-101
IPR009212
SUPERFAMILY
SSF56112
3 341 339 2.04E-69
IPR011009
Pfam
PF01636
19 214 196 2.7E-15
IPR002575
Gene3D
G3DSA:3.90.1200.10
46 342 297 1.2E-129 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009086
Biological process Methionine biosynthetic process The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.
Subterm of
GO:0046522
Molecular function S-methyl-5-thioribose kinase activity Catalysis of the reaction: S-methyl-5-thio-D-ribose + ATP = S-methyl-5-thio-alpha-D-ribose 1-phosphate + ADP + 2 H(+).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0326400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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