Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0327300 |
| Transcript ID | LotjaGi5g1v0327300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G19460.1 Reticulon family protein; Swiss-Prot: sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11; TrEMBL-Plants: tr|A0A0B2SDK7|A0A0B2SDK7_GLYSO Reticulon-like protein; Found in the gene: LotjaGi5g1v0327300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64479799..64486233) extracted from Lotus japonicus Gifu genome v1.2.
GTTAAAAAAATGTCTTGTCATTCTATTGAAAACATATAGTAAAATATGACATTTTTCCAAATGTAACAAAAAAAAGTAGT AAAATTACTAAAATATGACAATTTTTTTTAATAAATTTTCTGAATAATAAAAAAAATCAATTTTATTAATAAACTACGAA ATAAAAATAAAAAATCAAAAGCAAATAGACTGATACTATATGGGCTGGAAAAGCCCAGCCCATGAAAGAGCAGGTGAGGT GAGAATGGATGTCATTCGTTTCGCATTGGCAACGTGGAATACATGACCTGACCAAAAAATCAAAAGAAGAAAGAGCCACC GTAACAGCAGTGTTAGTTTGTTACTCGCGACGCTGCAACCACCACAAAACCTCCCCCAATCGCCATGGGAGAACCAAATC GGATCTCCGTTCACCACGCTCTCGGCGCTGGCTCAGGTTCTCTCTCTCTATCCGATTCCCTTCAATCCGCCATGGATCTC TTCCTGCTATAATCGGATGATTTAGTTTACAATTTGATGTTTGAAGCTGTTAAACAATTGGAAAATCGTTGTTGATATAT TTTCTCTTGAATTGCGTCTGTTGCAGTTGCCGATGTGCTGCTCTGGAAGAACTGGCGTGGAGGAGTTACGGTGCTGGTTT CGGCGACGGCATTGTGGTACCTGTTTGAGCGAGCCGGTTACAATTTCTTGTCATTCGTTGCCAATGTTGTATTGCTTCTC GTCGTGATTCTCTTCCTATGGGCCAAAGCTGCTAACCTTCTCAACAGGTATAATCTCTACTTACCGAGAATCATTTTGCA TTTGCAAGCATATCATCGCATCTTAGAGAAAAATGCATATAGAATTATAGATGCTGTGTTAATTGTTCTGTAAATTTATG CACATGAGGATGCTAAGAAGAAGAAACCTGTGATTCTATGAGGATGCTAGATATAGTGGTAAATGGTGATTATAGTTTCC TCCATTGAAATTACTTTGTTTTGGTTTTATGAGACAGACCACTTCCTCCTCTTCCTGATCTGGAGATCTCAGAGGAAACT ATAGCCAGGGTTGCTGATTCACTACAAATTTGGTTAAATCGGGTTTTGTCTCTCGCACATGACATTGCGATTAAGAGGAA TTTGCTGCTTTGCCTTCAGGTACCGGGCGATATTTTATCTTCTCATTTTTGTGTTATACCGAGTTCGATGAGTTTAAGCG TCAGTACTCGGTACAAATACAGACTTGTTTTTATGTTGATAGTTCTTTATGTGAATCAGGTTGTTGGTGCATTGTGGGTA ATATCTTATATTGGTAGTCTGTTCAACTTCTTGACCTTGATCTATATAGGTGAGTTCTATGCTTTGGTAGCTTTTTACAC ATTGCGATTATCTTTTGTGAAATTCTCTCAGCATAAATCTGCTTTTAATACTCATTAATTTTTCTTGATAGGTGTTCTTC TTAGCTTGTCTCTTCCTGTGTTGTATGACAAGTACCAGGACCAAATTAATGATAAGCTGTATCTGGTGCATGGGATTTAT CTGACACAATATAAAACGATTCACAGGGTTGTTTTAAGCAAGATCCCAAAATTCACAAACAAAGAAAAGAAGGTGCAGTA GGTATGCAGTGAGAACATTCTATCCTGTTACGTATATGTTTGATGCAAATAATTGCTAAAAACCATATCCTGCTCCCATG TATTTTGTGAGCAATTTGTCTGTTTTGCAACATCATTACTGCACTATCAACATAACCTTATTTTAGAGGCATCATACTAG GTACTAGGTAGAGTTTTGTCTATGTACCGTCTAAGAAAACTTTTTAAGGGGTGTAACTAGTTTACCATTATCTGAGGGTT GGTATAGCCTCTCTCTTTTTCATGGGGCAGCACCAAAGAAAGGACTGCTTGCATATATTTTAACACTTATGTTTTGCCAG TAACATGTGCTGTTCTCTTATGTCACCTAGTCAGCTTTTAATAAGTTTTGACAGCAAGTAAAAAACCACCATAAAAGTTA TCAACCATGAACCTGAAATAATTTGGATGGAGTAGTTATTAGCAATCATTGAAAGGTGTAAATTTTGGATGGAGAAAGGG CGCGTTTTATGGGATATTAATTGTGTCCATTCGAATGTATAATTTGATATTTCCAGGTTCTCGTATCATATTTATGCAAA TTCCAGTTGCATTTGATAATACCAAATACAAAAGATGATTTACAACATTTTGTATATATATTTTTTCAACTAAAAACTTT AATAATTTGATTTGATATGAATAATATAAATTTGGTGTTTTCTTCTTTAAATTATTCAGTTGAATTTTTGAGTTAATCTC TTCCATTGGAAATTCAGGGTGCAAATGGATAAATGAAAGTCTATTAGGAGCTTACACGGGGTGCTTAACATTTGGAGTAC TTGAAGTTTTTCTTTTGCTTCGAAGCTATTGCTGTTTAAACTTCTAATTGATGGTTAATGGTATGGTAGTTCTTCAGAAA CAGGATTGACCAATAGCTTTGACGTAGGTGATTATTCTCTTCTCATTTTCTCTGCACTCGGGGAGATGATGCTTTATGTG AACTTTTGTCAATGGGTATGTTACCTTATTAAGCTTCAATTTGGACCGGATTACAGAGGAGGCAAAAAAGAATGGACATG GAGAACTTGCATATCGGTTTTTTTTCTTTAGGATGGTACATGGCATGGTTTTTGGCTTTTTGCTACAAAATGAACTTGGT TGTGTTGGTTATATGATGTAATGCTGACTTGGTTACTACTATATGATGAGGTCATGGATCTTAAATTCTCACGTGTAATA TTTTCGCCTTATTGGCCAATATTGCACTCTTACTTTTCTACTGCCCCAAAATCTAGTTCTGGGTATAACCAGGAATCATA TCATTCAATGACCTTGAAAGGGCTGTGTTTTAGTTTAAAATAGAACGAGGATTAAAGCTTTCTAAGGCACTAGCATTTTA TCAAATCTAGATATGCTTAGTTCTATGATAGGATTGCACTTATTCCATAATGAGATTTCCGAACTTGTAATTTATAAATA TTTCTCTTCATCACTTTTAGTCCTAATTTTTGGTAAGATTGATCACATTCCTGCGCATAAAACCTTGCATGTGACTACTG CATGTGAACCAAAACAATCATGTACTTGATTATGATGTATAATAAAAAGTGGTGCAAATGCAAAATTACGTGCAACAAGT TAACCCAAACTAGAAAAACCGTGTTCCTTACATAAAATGTCAGAACAGACAGACAAAGCTAGCACAGCATGCATTTTGAA AAAGAAACAAATACCCAGATGGAGATTGCATTATACAGTTCTATTATACAATCAATACAAAGTGGAGTTTTGAAATTTCT CCAGTTCACACTTGCTGTTGACAAGCTATGAAAGAAACAACTGATAACGTTAGAATCCAAACATAAACTGTAGAGTCTAC GCAGTGCAGTAAACTCATGCAATTGTGATCATCTGCCTAAGGATCTTGAATTGTTGAGGCGCTACCATTCTTATTCACAA TATTGTATAGGTTATTTTCAACTTGGAAATACATAATGTCAATCGCCTCAGAACAGGGCCTTACAATGCGGTATCAAGGC TGAACACAGTTCATAAAGAAAACAACCACTATGAATGAGGGTACAATTTTGTGTGTGATTCCATCCTACATGTGTTGAGG CACGCCTTACGCAAACTTAGGAAATGGAAGAGCTTCTGAGGGAGGTAATGTGACAGATCTCAATAATTCCAGTGAGAAAA CAAGTCCAAGGAAATGTGAAAGAATAGTATTCGCTGAAGCCTGCAAAATAAAGAGGGATAACATACTCATTTCTCGATGA CTGGCATCCAACACTCAAAACATTGCTATCGCTGAAGAGCACATGTTGGATCCAAGACAATCAAAATAATATTCACATTA TGCAATTTGATATATTTTTATTTTGTTTCATTTCCTTGTTTCAAGATCTTGCAATATTTCGAGGTTTTTTATCATTTCCT TTAAAAGAAGGTCAAAACAGTAATCACATATCAACAACTGAAAAGTGAACACAAAACAAACCAAACTGCCCCAGTCTTCC CTATATTCAGAAGTCATTTGCACTTCATACTGTCTAATATGTTTTTGATACAAGAGAACTTCACATTAAGAGAGTTGTGT TGTTTCTTCTCTTGATCCTATTGTTATGTTAATCCACCGGTCCGGTCCATACTTCAGACAACCAAATATGAGTAATCAAG ACATCTCCCCCAATTTCTTATAGATTTCTTAAAATGGAGAAGAAAGACAATGGCAGATGCCAGAAAGGCATGGCATACAG ATAGAATAGTTGCCCAGGATGGTAAGGATGGCCATTAAGGGGAGCTGAAAAAGATGAAAACCCAAAACTTGGAGCAAGTT GAGAGTTTGAGACTATGAAAAGTTTTTGAATAACAACATTAACTATGCAGTGCAGATCACAGATTGCAGAACGCAAGGAA AAAGCAAAACAAGAGATATAACATGATCAAAACATCAAATTATACTACAATTACAGTATCTACCTTCAGTGCAAACCCCT CAAGAAAGTAAATTAAAATTTTCATTATCTATAGAAAGGAAACTTTATAGTAAACCAATATGTTTTACCTGCACCAAAAA TACATCCAATGCGAGAACAGGGCTAGAACCAGGAGCAATTCCCTGATAATATGGATTGGCAGCGGAAGTGAGAGCCTTTG CAACTAACAGTCCAACCGTGGCTTGCATCCCAAGGATAGCAGCACCCATCCCCAGAAGGTTCACTACAATACCATTTTGC AAGCTTTTCACCACATCAGCGCGAGGGGGTGCCTGTAAAGCACAGGTAAAAAGTGAAGCTACCAACCTCCTAAAGAATCA CTAAAAAGAAGATGTGTTTGAGTAACGAGCTTAATTAAGTGGTAACCTAATAAACAGGAAGCTTACTAAAATAAGCTGAT ATGAACAATAATTTATAAGTTAATGAGAGAAACATATTAAAATAAGCTCAAAAGAGCTTCTAGTTAGGCTATACACGCTA TTTTCATAAATTTAATCAAACATCCTATAGTCTAAGTGTTTATGTTACAAGTTAGGCAAAATAAATTTCCAAATGTATCC TAATTCCCAAGTCTTATAGACACACTGATTTCCTTCAGTTTGTAAACTTCCAAAAGGAGATAACACAGGTAATGTGGCTA TAAAATAAACATGTATCCAAACACAAACTAAAACAATTAGCATCATTCAGCTCTCTAAACAAATTTAAATAAAAGAAAAA GAAGAAGCACCTTGGTAGGTTGATTTGCAGTTTTTCTAAGCTTCTCAGAGAGACGAATATAGCCAAAGGACCAGAACACA GAAATGAACCCAGCCACTATTCCACCGGCAGTAGCATAAAACGTAGCCGGCGATGTTACCTTCCCGGTGACAACAACCGA AAACGAGAGAATGACGGCTGAGATCACCGTGCACACTAGCTGACCCCAAAACCCTAAGCTACCCAAACGCTTGAAATACC TCGCTGTCTTCTCCAATCTCTTCGCCACCTGCACCACCACAACAACAACAAAACCATTACTATCACAGTACATTGCCAGT TTCAGCAACTCTAACCAGTAACCACAGTTTCAAACCCTAGAAATGGAATTCTACTTGGCAATCGGAAAATCTAGAACCAC CTAACGGCGATGATAACATAGCAATTCAGAAGACCCACATGCAATGGTAGTTTGGAGAAAGTGGGGGCAGTGATGAGAGC GAGTACCTGATCGAGTTTGGCTTTTTCTGATTCACCGTTGGAGGGAGTGAAAGCTGGAGACACCTGGGAAGAAGCGGTTA CGGTGAACGGAAGATTCCGTGGTCGATGAGAAGTGACGGAACAGAAAGAGGAAGAAGAAGGAGGAGTCAATTTGAGAGGG AGTGAGGGGAGTGAATTCGACCGGAGAAATGGTCGAGAGAGACGATGGGCGGAGACGGCGGAGACTGAATGAGGAACTGC AGGTGGTGGCGCCGCCGTGAACTTGCCGGCGCATGGTGCCGGCAAAAGAAGCGTTTGCATTGCTAATTGCGACGGTGAAG AGAGAGAAGAGTAGCTGGTGTTCGTGTTCGAGTTCTCTGGTCTTTTTCCGTCTTCTTCTGCTTCCTCTGATTCGCAAACG TGAGATTGAGGTGGGTAATGGGAAGGCCCACGTTTATTTTTGGGCTTTTTCTGGGCCTGATGATTCTTCACAAAAAACTA GGCAAAATACAACGCAATCCTAAAAAGACCATGTAGATTCTTCTTCTTTGTTTATTGCGCCTTTCTTTCAACTATGGTTG AGTCATTAAATTGTGAACCATAGTCTTTATTGGTTGAACGATTGATTTGATTTTTAGATCATTGGGTTTGACTAGGGGTG GAAATGCGGGCAACGCGCCCGTCGGGTCGGACTAG
CDS sequence (LotjaGi5g1v0327300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAACCAAATCGGATCTCCGTTCACCACGCTCTCGGCGCTGGCTCAGTTGCCGATGTGCTGCTCTGGAAGAACTG GCGTGGAGGAGTTACGGTGCTGGTTTCGGCGACGGCATTGTGGTACCTGTTTGAGCGAGCCGGTTACAATTTCTTGTCAT TCGTTGCCAATGTTGTATTGCTTCTCGTCGTGATTCTCTTCCTATGGGCCAAAGCTGCTAACCTTCTCAACAGACCACTT CCTCCTCTTCCTGATCTGGAGATCTCAGAGGAAACTATAGCCAGGGTTGCTGATTCACTACAAATTTGGTTAAATCGGGT TTTGTCTCTCGCACATGACATTGCGATTAAGAGGAATTTGCTGCTTTGCCTTCAGGTTGTTGGTGCATTGTGGGTAATAT CTTATATTGGTAGTCTGTTCAACTTCTTGACCTTGATCTATATAGGTGTTCTTCTTAGCTTGTCTCTTCCTGTGTTGTAT GACAAGTACCAGGACCAAATTAATGATAAGCTGTATCTGGTGCATGGGATTTATCTGACACAATATAAAACGATTCACAG GGTTGTTTTAAGCAAGATCCCAAAATTCACAAACAAAGAAAAGAAGGTGCAGTAG
Protein sequence (LotjaGi5g1v0327300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEPNRISVHHALGAGSVADVLLWKNWRGGVTVLVSATALWYLFERAGYNFLSFVANVVLLLVVILFLWAKAANLLNRPL PPLPDLEISEETIARVADSLQIWLNRVLSLAHDIAIKRNLLLCLQVVGALWVISYIGSLFNFLTLIYIGVLLSLSLPVLY DKYQDQINDKLYLVHGIYLTQYKTIHRVVLSKIPKFTNKEKKVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 5 | 204 | 200 | 1.1E-95 | – | |
| PANTHER | 5 | 204 | 200 | 1.1E-95 | – | |
| Pfam | 18 | 171 | 154 | 3.7E-50 | ||
| ProSiteProfiles | 18 | 204 | 187 | 38.956 | ||
| Phobius | 27 | 44 | 18 | - | – | |
| TMHMM | 27 | 44 | 18 | - | – | |
| Phobius | 45 | 49 | 5 | - | – | |
| Phobius | 50 | 70 | 21 | - | – | |
| TMHMM | 51 | 70 | 20 | - | – | |
| Phobius | 71 | 118 | 48 | - | – | |
| Phobius | 119 | 136 | 18 | - | – | |
| Phobius | 137 | 141 | 5 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 142 | 160 | 19 | - | – | |
| Phobius | 161 | 204 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0327300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…