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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0327600 |
Transcript ID | LotjaGi5g1v0327600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | LINE-1 reverse transcriptase like; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi5g1v0327600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64493514..64495428) extracted from Lotus japonicus Gifu genome v1.2.
CAGCAATTGCAATTGAGCAGGGGGTTACACAACATTTCGCTTCTTATCTGAATTGCAAAGTAATGTCTGTTCCATTTGTT TATTTGGGTATTCCTGTGGGAGGTAGGCCGAGTTGTCGGAAAATGTGGGAACCAGTGATGAAGAAGTTGAAGGATAGGCT AGCAGTTTGGCGTCGGAAATCTATTTCTTTCGGGGGGAGAATTTGTCTCATTCAGAGCGTTCTCTCAGCTTTACCACTAT TTTTCTTGTCCTTTTACAAAATGCCTGTATGTGTGGTGTCGGCTTGTACTCGGCTTATGCGGTCTTTTCTGTGGGGTGGC AGTGAGGGGGAGAAGAAGATAGCTTGGGTAAAGTGGCAGATGTTTGTAAGCCAAAGGAGGTGGGTGGCTTGGGTATTAGA GATGTACAGAATTTTAATAAAGCCTTGTTAGGGAAATGGATGTGGAGATTGAGAACTGAAACTGGAAATCTCTGGTGTCG GGTGGTTCATGCTAAGTATAATAACGAGTTGAGAATCAAGGAATCAGCTTGGTGGAGTGGTGTTCAGGAGGCTTGCAGGG TTGGGATTGTGGAATGGTTTGAGGAGGGGGTTCAAAAACAGATTCGGGGGGTGATGCCACCAAATTCTGGACGGAAGATT GGATAGGAATGGGTACTCTTCGGGACAGATACTACAGGCTTTTTAATCTGTCTAAGGAGAAAAGGTGTTGTATTTTAGAG TGTGGGGGGTGGAATCACGGGGTGTGGACTTGGAAACTTTCATGGCGGAGGGCATTAGTTGGGAGGGAGTTGGGTTGGCT TGAGTTGATGATGAAGGATTTGAGTGGGGTGTGCTTGTCAGAAGGGGTTGAAGACAAGTGGTTGTGGCTTCCGGGTGGCA CCTATACAGTTAACTCAGCTTACTCTTTTTTGCAGGCACCAACACTGGCGGATACAGATCCTATTTTTGCCACCATTTGG AGAACCGTAGCTCCTTCCACTGTGAAAGCGTTTGCGTGGAGATGTTTGTTGGGCAGGTTGCCAACCTATGATAATCTGAT AAAGCGTCAGGTAGTTGTGGATCCGGCTATGACAGTTTGCAAGTTCTGCCAAGGTGAAGTGGAATCGGTTACGCATCTGC TGTTTGCGTGTTCTGTTTCTATGGATGTCTGGCTTGAGGTGTATAAGTGGTTTGGAGTTTTCACTGTGTTGCCTAGGGAT GTTCGAGGTCATATTCTTCAGTTTCACTTTGGATGTAATGGAAAGCAATCCATTGGTATGCTTGTTGTTTGGCTGGCAAC AGTGTGGACAATTTGGCTGTTACGGAATGAGGTGGTTTTCAGAGGTGGCACGATGAACATTCCAGCTACTGTAGATTTGA TAAAGTGGAGATCTTGGCAGTGGCTATCAGTGAAGTCTACTGGATTTTCCTACTCTCTGTTCGAATGGTATGCTGAACCG TTGGTGTGCATTCAAGCTTTTTAATAGGTCCCATTATGCAGCAGCGAGGCTTTTGTGATGGTTCTGCTTTTACTGTCTTG GGCAGAATTTTGGGGTGCATTTTAGTGAGGAGTCGTAGCTGTGTGGTGAGTTTGGGGTGAAAGTATTTGAGCTTGTGGTG TGCTTGTGTTTTGGTTAGTGTTTGCTTTGGAAAAGGCTACATGTGCTTGCTGTTTGTGCTGATATGCATCGTGGAGGATT GCTGATTTTGTGTGCTTGCTGTATTGGTTATATTTAGTTTGCTATTTTTATTTGTTGGAGCTGAAGGTGTCTTGTAACTT GGGTACTCTTGTTTTCCCATCTTTCTTTAATTTGTATTCTGTCTTTCATGTATTGGGTTGAAGTACCCCTTGTACTTCTA TGCAATACAAATTTGGCTTATAAAAAAAAAAAAACTTTGTAACCTCCGCCAACTCTATCTGGCTCTTAATGATAC
CDS sequence (LotjaGi5g1v0327600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACTCTTCGGGACAGATACTACAGGCTTTTTAATCTGTCTAAGGAGAAAAGGTGTTGTATTTTAGAGTGTGGGGG GTGGAATCACGGGGTGTGGACTTGGAAACTTTCATGGCGGAGGGCATTAGTTGGGAGGGAGTTGGGTTGGCTTGAGTTGA TGATGAAGGATTTGAGTGGGGTGTGCTTGTCAGAAGGGGTTGAAGACAAGTGGTTGTGGCTTCCGGGTGGCACCTATACA GTTAACTCAGCTTACTCTTTTTTGCAGGCACCAACACTGGCGGATACAGATCCTATTTTTGCCACCATTTGGAGAACCGT AGCTCCTTCCACTGTGAAAGCGTTTGCGTGGAGATGTTTGTTGGGCAGGTTGCCAACCTATGATAATCTGATAAAGCGTC AGGTAGTTGTGGATCCGGCTATGACAGTTTGCAAGTTCTGCCAAGGTGAAGTGGAATCGGTTACGCATCTGCTGTTTGCG TGTTCTGTTTCTATGGATGTCTGGCTTGAGGTGTATAAGTGGTTTGGAGTTTTCACTGTGTTGCCTAGGGATGTTCGAGG TCATATTCTTCAGTTTCACTTTGGATGTAATGGAAAGCAATCCATTGGTATGCTTGTTGTTTGGCTGGCAACAGTGTGGA CAATTTGGCTGTTACGGAATGAGGTGGTTTTCAGAGGTGGCACGATGAACATTCCAGCTACTGTAGATTTGATAAAGTGG AGATCTTGGCAGTGGCTATCAGTGAAGTCTACTGGATTTTCCTACTCTCTGTTCGAATGGTATGCTGAACCGTTGGTGTG CATTCAAGCTTTTTAA
Protein sequence (LotjaGi5g1v0327600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTLRDRYYRLFNLSKEKRCCILECGGWNHGVWTWKLSWRRALVGRELGWLELMMKDLSGVCLSEGVEDKWLWLPGGTYT VNSAYSFLQAPTLADTDPIFATIWRTVAPSTVKAFAWRCLLGRLPTYDNLIKRQVVVDPAMTVCKFCQGEVESVTHLLFA CSVSMDVWLEVYKWFGVFTVLPRDVRGHILQFHFGCNGKQSIGMLVVWLATVWTIWLLRNEVVFRGGTMNIPATVDLIKW RSWQWLSVKSTGFSYSLFEWYAEPLVCIQAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 200 | 200 | - | – | |
PANTHER | 60 | 245 | 186 | 9.2E-31 | – | |
Pfam | 79 | 168 | 90 | 2.6E-19 | ||
Phobius | 201 | 218 | 18 | - | – | |
Phobius | 219 | 271 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0327600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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