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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0328000 |
| Transcript ID | LotjaGi5g1v0328000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein TorD; TAIR: AT2G01640.1 ribosome biogenesis protein; Swiss-Prot: sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic; TrEMBL-Plants: tr|I3SP06|I3SP06_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0328000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64519782..64525172) extracted from Lotus japonicus Gifu genome v1.2.
GGCAGAATTTGCACAAACTTGAAACATCAGGGGCCAAAAATACTTTTTAGCCAAAAATGATAAATAAAATTTAAAAAATT ATAGTGTTTATTTCATTAGTTTTCATATTAGATCAATTTGTCAACTTTTTTTTATGGTTTAATTTTCACTGGAAAACCCT AACGCAACATTTTCTTCTAATCCTGCTCTTTCTCAGTCACCGTCGAAGAAGGCGGCGTCGTCGTCACCGGCGAATCTTCT GACGGCGGCAAGGTATTCGTCAGAACGCGTGTTCTCCACATCAAGGTTACACCACTCTCATCACTGCGTTTGAGTTCCTG GTTCGTAATCCCCAATTTTCACGCTCCATGTTCTTATGAAACGAATTCAGGAACAATAGCTTAGATTAAAATTTCTTTAG ATTCAGGTTTTCCTGCTTCTGACTGTATTTGATTCAATCGATTGTAGAACTGTTTAATTTTCTTCCCAGTTTGGTAGCTA GTGATGATCAGTGCATTTTTTGCATTCTGTACTGTGCTGTTATGTGAAAACCCAATTGAATGTACTTTACAATAATTGAA ATTTTGGTGTCTTTTACCTGTGAGTGATTGCTTTTGAGTGCATTGATAGTATGAAGTTGTTGTGTTAACTGTTAAGCTTT CTAGTGATTGGAGGGCATTATTAGTGCAGTATAAGAATGCTATCTCTCCATGGTTCAGCTTAAATAGAAAAAAGAATTTC CAATATATTAGTAGTTTCGGATGTGTTTGGAGAAGCTTTGGATTTAATCACTCCAACCCCTCACACCTGCAATTACTTAT TGTCATTTACCTAATATATAATATCCATTGAGAGACTAACCCCTCGTGACTCGTGTATATAGGAATTGGGTTCTACTCAA ACCCTAACTTTTTATCATCGATGGGCAAGACAAGTACAAGGTTAATGTTTTCCCTCTTCGCTTTCAATTCTGAATAGTTA ATCTTACTTCTCATCTAATTGCTTGTTGTTTCTGCAATTTGAGGTTGTGTTTCTAATTCTTCCTAACCCGTGCAGGTCTG ATTCAAAGTCCGACCGCAAGCTTGAAAAGAAGCTAGAGTTTTATTCCAGTACGTTTGGGATCCATTGTTTTTTGTCTTGA ATTATAACATTAAAATTTCTGGTCTTCACTTTAAGCAGAGGCTTGTTGCTTCTTAATTTTAATACAAAACAGAACAATTG AATCTATTGAGGAATAGAAAACAATTGCCAGTGTCGAGGTGTCAAAATGTTAGTTTTATGTTAGGGCTTATATCTGTTTT GTTTAGGTGTATATAAAATATCTAGTGGCTTGGCGCATATTACTTGTCAAAACTGTCTAGATTTTAACTCCTTCCAATCC ATCTGTTATTTCAGAGGTGAAAGATACTGTTGCTTCCTTGGGCGCCCAAAAGTCTATTAGCAAGGTTAGAATCTTATTTC TATGGCATTACTGTTCTTGAGATTAATTGGCTGAACTGTGGAAGAACTTCAGTAATTTTATGTAATGGGCTTGATTTACT GGCTAATCAATTGCATTATGCTGGTTATTACAAATCATTAGTGGACAATTGGTTTTAAAATGTTATCTTGTTGATGGACA CGTTAAATAATGAATAATTTTCTGGTCCTTGCTTGTTCTTCACTTTGTTACGGTCCCACAACTTCAGGCAGGACAGGTTA TTTCGTCCTAATGATTATACATGCTTGCTCTGATATTCAAATCTGGGTGTTCATGTAATTTTGTTGCTTACAAAAATATT CCAAGGACAATTTCCACTTTCATTTAAGAAGCAGTTAAATGCTTCACATGAGTAAATCTTGATGGAAACATAGTGTACAC TCTTTGACGTGTTAGTATTGGGAAATTTAAAAGTTATTGTTTAATATTTAATTATAGGACACTTGGTAGAATTAAAACTA ATTGTAGTCTCCAATTATCATAAGATTTTGTTTTTTCTTACCCTTTAAATGAAAACAAGTTTCATGTTCCAACTTCCACG GTAGTATAGTAAACTTGTGATGATATCTTGGTCTGAACTCTGAAGAGTTCTTTTTGTTATGTATCTAATAGGTATAGGTA TTTTAAATATTTGTCCACAAATATTTATTGAGAATGTTCTGTTCACATGCTTGTTGTCTATTCTATTGACTGAATCAAGA TCTTTTGGAAAATATATGCCACTCTAATTATATGTGCAAAATGTACTAGTGTTCTTGGTTTTTTTAATATGTTTTTGTCT TGTGGCAGAAGAAGAGCAAACAGCAAAGGCGGCAGAATAAATTGAAGGCATATAACCTTTCCTCAATCTTAGAGTCTCTT CCGGAGTTGAAGGCATCACAGAAATCAGATCGTGAGGATGACTTTAAACTAAATTGCAAATCTAGGAAGAAACTATTGTA AGTGCTTCCCTTATAGCCAACATTAAATTTTGCATGTAAAATTGTATTTGTAACTTTTTTTTACTTGTTCATCAGATTGA AGGAAGGACAACGGTTGTCTGCAGTTCTTAAGGATAATTTATTCCAAGCGGATCCATTGGCTATCCTCCATCAACACTTG CAGAACACACAACCGATAGAAGAGAAACAACCCAAGAAGAAAGTTAACAAAAATGGATCCAAGAAGAGGAAGAAATCAAA GGCTTCAACTGGATTACAGTCTATGGATATGTGAGGTCTCTAAGTGGCTGCTGTAATGATCTCCTTTTTTCAAGGTGTTT CCATAATTTTGTTAGTTCTAGGAATCAGATTATTCAAGATATGAATGACAATCTTAAGCATGATGTCCATTGTAGTTGGT CACTTATTTTTATATCAGTATCCAGAGTGGCTAGATGCTGAGCATATCTACTCTCAACACAGCATCACGTGAAACCTATG ATGAATCATTTTTATGAACATTTATCTAAGAGGCTTTTCATATGAAGAAAAGTAATGAAAGTCACTAAAGGTAGGAATAT GACTAACAGGGTTATTAATTTGAAACACTATTAACCTTTATTCTCTCGCTCAGAGAAGCTTATTTTACTGTGAACTTTTA TTTATTTAAGCAATGCATAGATTGCAAATCCTGCACCAACTCCTTCACAGCTAAATTAATGCAAATACATCATAATTCAA GAAGATAAACATTGGCTTGGATAAGGCTAACAAGGAAAGGAGAAGATTTAATATGATTTAAGGCTTCCATTGCTTTTAAT ATTTGAGGCCTTGAAGCCAATTCTTTGCATCAAAACAAATATTACAAGAAAAAGGTTTTACATGGAAAATGAAACCTCAA AATTACAGAATTTACAACAAACACAACCTAAGTACATTGTCAGTTCTTTGAGGCTGATTGGAAGATGAAGACTGCTGTCA AGACACCCACGAGTGCTGTTACTGCCAGTGCAACTGTAGGCAGTGGAGATGCGACTCCAAAGTTCTGCACAATCAAATTA CAGGAACATTGTTATTCTCTTGCAACAAATTCTGCTAAAAATCAATACTAGAATGGGCGAGAGAAATAGGATTCAGTGAG TTGAATTCACTTGGAAGCTTTAAACTTGAAATGATTACACTTAGTTTACATGCATTGGAAAGTTTTATGAAGGTATATGC TTAATTGTAAAATTTATTAGTTTAAAAGGTCATGAACAAGTATTGAGATCTGTTAATTTACCAATGACTTAAAAAAACTA TCTTAATTTTACAACTAGATGTCATTACTTATAAACACAACAAAGTAAGGGAGAGAGAAAATTTACACTATCAAAGTGAA CTTTCGGAAGATGAGGGGTTATAAAAGAGGCAAAATCCTTTAATCGATTGTTGAAAATGATAAACTATATCATGCCTCAA AAGATGGAGATATACTCTTGCAGTCTAAACTATGCCTGAACTAACTCACTAATTATTGTATCATTTCATTTTCATACCTC TAGGAGTCCCTTTCCAGTAGCAACTTCAACAGTGATGCCTGCTGCAAAGCCAATCATCGCTAGCCGCCCTAGCCACACAT CCAAACCGTTCCCATCCTTGGTACTTTGCTCACTTCTTATTGAAACCGGCATTGCTCTGCACGCAAGTTTCCTTCCATGA CTTCTCCGAATCACTTGGGACAAATCAAACAATACTTAGCTTGTTAACTATGATCTCATTCCAACATCACATTAGTTCTG TCCTCCCCTCAAACCCATAAAATGAAAAAGCATCATAAACGTCACAGAATTATGGATACAACTACAAACCCCAACTATAT AACAACAACAAAATCCCTTTCTTACCAGTGGTATCGGATACATGAATCAAATATGACATGAATCATTAACTAACTTTATG GTGATATTTGATATACCATTGCCATTTTCCAATAACACAATCTATAGCATTGCCTCATTCTATTGCAATATGTTCATTTA CTTTATACCAGATTTTGTAACAGAAAATACCAGATTTTGAGTGTGGAGCTTGTATTTGTTGGAGCTATAACTAACTTTAG TATGCAAAAGAAGTACCAACAACCAAGTACTAAAGAAAGGAAGCTGTAGTCTATAGCAATCCTCATGCTAACACTTTTTC AATCCACTTGAAGCCAGCATAATATTGCCTTCTTTAGAAGTTAATCAGTTCAGAAGTTCTACTTAATTTCGATTTCCAAC TAAATGATGATTTTTTTTTTCCTTTCTAAAACAAAATATCAGAAAAAATTAGGATGAACCCAAGATTGCTAAGTTACCTG AGCATTCAATTTTCTTTAAATTAAATGCAGAAAGGATTCTGAATGCAAATTCCAGCTTATAAGTTAGAATCTGATAAGAA GAAGTAATGACAGCAGCTAGAGACTAGAGATAACTTACATAGTGGGGTACCAGTGGCGAAGGATGCTCTAGAAGGAACCA AATTTGGTAGAGGAAAGCGAGCAGTGGCAGAGTATTTTGCAGCAGGGAAAACACAAGCATCTGCAACACAGCACAGTTCA ATAGTTGAGTGTTAGACATTGGAACTAGTCATGGAAGAAACAAAGAGATAAGAGAGTGAGTAAGCTTACCACGAAAAGAG ATAGAAAGAGATGCAGAGGTTTGAGTTGCAAGTGCCATGGTTTTTGTTGTGCGGTGCCAACAGGTTTGCAATCCTCTATA TTCTTTATCTCTTTGCTCTTGGACACGCGGTGACACATAACACCATCACCATTCTTTCAACCTTAGATTCGGAAAATGCA CACGTGGCCTCTTGAGTGTTTTTCATTTTGTTACACAACATTTTGGTAGATACTATATATGTTTTTTTGTTAATGGGAGG GCAGAAGGCCCAAGATACTAATTTTATTTTAGTTAGTGGCCTTGTGAGTATTATTTTTTTTTTAAGCTTTTGGGATACCA TATCATTGACCTCCCAAACTTGAGTTGTGTG
CDS sequence (LotjaGi5g1v0328000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAAGACAAGTACAAGGTCTGATTCAAAGTCCGACCGCAAGCTTGAAAAGAAGCTAGAGTTTTATTCCAAGGTGAA AGATACTGTTGCTTCCTTGGGCGCCCAAAAGTCTATTAGCAAGAAGAAGAGCAAACAGCAAAGGCGGCAGAATAAATTGA AGGCATATAACCTTTCCTCAATCTTAGAGTCTCTTCCGGAGTTGAAGGCATCACAGAAATCAGATCGTGAGGATGACTTT AAACTAAATTGCAAATCTAGGAAGAAACTATTATTGAAGGAAGGACAACGGTTGTCTGCAGTTCTTAAGGATAATTTATT CCAAGCGGATCCATTGGCTATCCTCCATCAACACTTGCAGAACACACAACCGATAGAAGAGAAACAACCCAAGAAGAAAG TTAACAAAAATGGATCCAAGAAGAGGAAGAAATCAAAGGCTTCAACTGGATTACAGTCTATGGATATGTGA
Protein sequence (LotjaGi5g1v0328000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKTSTRSDSKSDRKLEKKLEFYSKVKDTVASLGAQKSISKKKSKQQRRQNKLKAYNLSSILESLPELKASQKSDREDDF KLNCKSRKKLLLKEGQRLSAVLKDNLFQADPLAILHQHLQNTQPIEEKQPKKKVNKNGSKKRKKSKASTGLQSMDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 156 | 152 | 7.6E-50 | – | |
| PANTHER | 5 | 156 | 152 | 7.6E-50 | – | |
| Pfam | 8 | 122 | 115 | 3.5E-12 | ||
| MobiDBLite | 120 | 156 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. | ||
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. | ||
| Cellular component | 90S preribosome | A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. | ||
| Cellular component | Preribosome, small subunit precursor | A preribosomal complex consisting of 20S pre-rRNA, ribosomal proteins including late-associating small subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic small ribosomal subunit. |
Expression pattern of LotjaGi5g1v0328000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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