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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0330100 |
| Transcript ID | LotjaGi5g1v0330100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy-metal-associated domain-containing family protein; TAIR: AT1G22990.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q93VP2|HIP22_ARATH Heavy metal-associated isoprenylated plant protein 22; TrEMBL-Plants: tr|I3S9D9|I3S9D9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0330100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64723419..64725726) extracted from Lotus japonicus Gifu genome v1.2.
TAATTCTCAAGTAATTTATGCAACTTGAACTTGTTTCTAATCATCATATTCTCAAATAATTAACTCATTAAATTCAATAG TTTTGTGTGTGTTGGTGTCAATGAGCTTGAAGCTAGTGCTCAAAACCAAGTTGTATCTGTCATGGTGATATTTGCGGGAA ACACATGATTATAGAGTAGAAAAAGGTCATTGTCCAAACACTAATTTATACATTAAATTATAGCACAATTTGGGCACCAA TCATGGCAATGAAATCACTTCCCTTATATAAGCATATGTAATTTATGTCACCAAAATAGTGTTCTTGATTCTCCCTCCTC TCTCTCTGTTTCAAGTACTCTGTTCTTTCTTTTCTCCTTCCCCTGTTTCAACCAATTTTATCGTTAAGGAAGAAATGGGT GCTTTTGATTTTCTTTCAGATTACTTCTCAGTTTCCACCCCAAGAAAGAAACGCAAGCCAATGCAGGTTTTCATTGGCTT CTTTACCATTATTTTTGTGTGTATGTTAATGGTGGTTTTAATTTCAAGCAAAATCTGATTTTTCTTCTTCTTGTTTTGTG ATATAGACAGTGGAAATCAAGGTGAAAATGGACTGTGATGGCTGTGAAAGAAGAGTTCGGAATTCTGTTTCCAACATGAA AGGTTCATACCTATCACTTTTCCTGCTCTACTATTTTTCAAAGCAGAAAATGGAAGAAAATTTCATACTTTCATCTAATC ATCTTCCAGTCTAAACAAGCATAAGTATTCTGTCGAAATACACTATTTCTGAAATTAATTCTATGAAAAAAACATTTTAC TCAAACTTAAAACAAACATAATCTTATATGTACTTAGACTTAGTGTCTTTGGTTTCCTGTTGAAAGCAGTTCAAGAGACA TATTGTATTTTCATGACAGTTTTTCCAAACTTAACATAGTTGTTGGAATCAATAGATAAACAAATACATGGTTATGCCCT TTTTTGAAAAGCTTATTTGTGTTTCTCTTATAGCATAATCTATATATATCCAAGAGTTTGTGGATGAGCTTAATTCAGTT TATGGCATACCTATTACCTGTTTTGAATTTATTTTCATAAGTTGTTTAGATTAATTTCTACATAACATATATTCATTTTA TTTTAATAAATTTCTCAAATTAATTTAATTATCAATAGGCGCTTAGCATAAGTGTTTAATTAAACTATTTAACGAAAGAC ACTCTTAACCATTTGAGAACAATTCAGGTGTGAAGGAAGTGGAGGTGAACAGAAAGCAAAGCAAGGTAAGTGTGACAGGC TATGTGGATAGAAACAAGGTCCTAAAGAAAGTGCAGAGCACAGGAAAAAGAGCAGAGTTTTGGCCCTATATTCAATATAA CTTGGTGGCATATCCATATGTAGCACAAGCATATGACAAAAAGGCACCATCTGGGTATGTGAAAAACACTGATCTAGCAC TCCCCAATCCAAACGCACCTGATGAGAAGCTCACCACCCTCTTCAGTGATGACAACCCCAATGCATGTTCAATCATGTAG AGCAATTTTAGTCATACACAAGATCAAGGGCTAGCTAGTAGAACTTAGAAGAGCAGGGAAGGTTGTTTTGTGACTACTTA GGCGATCGTTGTGATAGTTACCTGTGTTTAATTACCACTATTATATGTACTTCATGGTCATCTTGTAGAAACTGCTTATA ATAGTAGTTATGATGTACCTATGTGTTCTTAACATACCAAGTTTTAACTTCAGTAATAATGGAAAAGTAAAAGATGATAA TTGGTGCTATGATATTTCAGATACAATCACGAGAGGAAAAATGGCTATGCATAATTTCATACCAACTTCTAGAAGGGGAG TCATATAGTGTATCATTATTTTAAGTAGTCCACCAATGAAATTATTATATCAATATGTATTAACAGTGAATCACTGGTGG ATCACTGTAAAAATAGTTTATCTTGTAATTTTTATCTTATAATTATATGCATAATAAAGGTTATAATTCATTATGGAAAG TGTTCTTATTAATTGATTGGGATAGAAATTTGGACACGTTAATACTCAATTGGTATTTACTATTTACACACATTAACAAT AGGCAAAGTGAAAAAGACCTCCAACACTGCAGGGTGGATGTACATTCATGCTCTTCAATCCCAGCGCTGACTACCTGCCT TAATTTCAACATATTATGTCTAAAAGTACCTATAATTGATGATGAAGGTATAACCCCAGCAATTGGATATAGCCATGTAC GTGGGTGAATGATGCAGGGTATGTATGGTTTTCAGCTGAAATTATGCTCAACTGATATATTTAGCTTT
CDS sequence (LotjaGi5g1v0330100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTTTTGATTTTCTTTCAGATTACTTCTCAGTTTCCACCCCAAGAAAGAAACGCAAGCCAATGCAGACAGTGGA AATCAAGGTGAAAATGGACTGTGATGGCTGTGAAAGAAGAGTTCGGAATTCTGTTTCCAACATGAAAGGTGTGAAGGAAG TGGAGGTGAACAGAAAGCAAAGCAAGGTAAGTGTGACAGGCTATGTGGATAGAAACAAGGTCCTAAAGAAAGTGCAGAGC ACAGGAAAAAGAGCAGAGTTTTGGCCCTATATTCAATATAACTTGGTGGCATATCCATATGTAGCACAAGCATATGACAA AAAGGCACCATCTGGGTATGTGAAAAACACTGATCTAGCACTCCCCAATCCAAACGCACCTGATGAGAAGCTCACCACCC TCTTCAGTGATGACAACCCCAATGCATGTTCAATCATGTAG
Protein sequence (LotjaGi5g1v0330100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAFDFLSDYFSVSTPRKKRKPMQTVEIKVKMDCDGCERRVRNSVSNMKGVKEVEVNRKQSKVSVTGYVDRNKVLKKVQS TGKRAEFWPYIQYNLVAYPYVAQAYDKKAPSGYVKNTDLALPNPNAPDEKLTTLFSDDNPNACSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 146 | 146 | 8.7E-95 | – | |
| PANTHER | 1 | 146 | 146 | 8.7E-95 | – | |
| Gene3D | 10 | 90 | 81 | 2.7E-19 | – | |
| SUPERFAMILY | 22 | 89 | 68 | 2.49E-17 | ||
| CDD | 27 | 86 | 60 | 1.44562E-14 | ||
| Pfam | 29 | 83 | 55 | 1.9E-13 | ||
| ProSiteProfiles | 32 | 87 | 56 | 11.815 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi5g1v0330100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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