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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0335000 |
| Transcript ID | LotjaGi5g1v0335000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor TFIID subunit 8; TAIR: AT1G31240.1 Bromodomain transcription factor; Swiss-Prot: sp|Q9SYZ9|TAF8_ARATH Transcription initiation factor TFIID subunit 8; TrEMBL-Plants: tr|G7J7B1|G7J7B1_MEDTR Bromodomain associated protein; Found in the gene: LotjaGi5g1v0335000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65207099..65212076) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAAATAAAACTATCAAGAATCAGAATGCCCTGAGGACAGTGAGGAGCAAACCCTCAACGCCTCCACTCACTCACAC ACTACGTAACCAACAAGCCAACTTCCCGGCTACCGCAGCTGCCTCCGTGCAACACGCGGCGCAACCGCATTCCCCACCCT CCACCACGCACTGCTCCGCCTTCATCGGTTGCAACAACGCAAGCAGCCACGTATCGCTTTAGGCTCTTCCCCTAACGAAG AGGTTCGTTCGTTACACTTTTGATGATTTCATAGATAAACTTCTCCATTTTAAACATGCAATGTTCAGTGTAAGAATAAG ACAAAACCGTTCATTGTCAACATGTTTTTCTTATTTGTTTCTGATTTGCTACTTGGTTTTTTGTCAAAATCGTTCATACA ATGTTCAGAATAACATGAAACTAGTTTTCACCACTAATATGTGATAGAAAGAATTGCAAGTTCATATGCTATAGCTGACA ACAAATGGTAATAATACAAAATAAAGTTAGTAATCTGAATTGCAATTACCAAACCGGTGCCGGTCGGAGTGGTAAAAAGT GGTTGTTTGAACCCCTAGGTCGAGAGTTCGAAACCTAGGAGCCGCACTCTTGGCGAGACCTTTGGCCTTCACTACACCTA GGTCGGAATTGTTAAGGAAGGGTTTCCTCACCAGGATTGCTCTTGCGGTGGACTTTTAGGTAAAATTTAATCCTAATTGC ACTCTGAAAAACCACTCAAATAGTCCTGCTAGAATCAATGCTGTAGTAAAAGCCAGTGTCGTCGAATACCCGATATCGTG GAGAATCAATGCAGTAGTAAAAGCCAGTGTTGTCAAATTGCGGATATCGCGGCGCTATAGCGTGGCACTCTGAGGGCTCT CCGCTATCCGCTATTTGCCGCTATGAGGGCTTTGACATAGCGGATTTTTGGCTTTCCGCTATTCTCTGCGATTAACAATA CTACTCTAAAAGCCTGAAATGGAATGTTATTCTTGTACTTAGTCAATTATTCTGATATTTGCTTTTCCGGTTTCACTGCC AAAGAATGAGTTAAAAAGAAACCAAAAGAAAGGAAAAAAGATAACACTCGTGTGCAGGCTGCAGGGTCGTTTCCTGTATA GCGAAAATTGGTTTGTGTCTAGTGTCAGCAACATAGAGAGTGCTTTGAAAATGAAGAATCAGAGTGATACCATTGGTTCA AACTTAACCTGTCAACGAAAAGAAAAATAAAATATGTAATTGTACTCAAGCTTTGAATATTGTTGGTTCATATTATTTAT AGTCTTTTGTTCTTGTCTAGTTTAGAAATCGAGCACAGAACTAATACAGGTGTATGAGCAGTGTGTACTGAGTAACCTCA GTGTTATTTTTGTCTAAAACCATAGAAGTTTGAGGTCTATATTTGTGTGTTAGGATGTAGTGTCTTATCTGGTCCTTTTT AATGTCTTGCTCCATATCTTTTAATGGTAACATAGAGATTGTTACAGTTCCACTTCATTTGCAGCAAGACTTGCTTTTGC ATGCATTGAAGGGTTATTTTTCTTGGGATGGTAGTCATATCATGACAGAGAAGCTCATAGGATTTTCCTTTTTCTTAACG GGAGCATTATGAGTCATATCTTATTTTCTATGTAACTTTTTTGCATTGAAAGTATACCAGATTATCTTATTTTGCTCAGA TGTTGACAGGGCTGTTATCGGAATAACCAGTGATTACTTGCATTGAGTTTTTCGGAGTGTGCACTAGAATGTAATTAACA AAGGTGAGCTTTCTTGTAGACTTTGTTGCATAAATCTCCTCTTGCTATGAAGCTGGTGTTTTGTCCTTTATAGTGGAATG TAGATGTTGAGTAGATTTATGAACTACCGCTTGGACACTGTTTGCACACATCATTGATATTTTCTTCTCTCAACTGCTAT GATATGCACTTCTTTGTCCCACTTGTGTTTGAACCTATGCATGTGCAGTTGTTATTGTTCTTAATTTCTCAGCAGTTTCT GCAGAAATGTCGTGAAATATAGAAATGAAATAAATTTTACTAAGACCATAAGCCATTAGCCTGTTGGCCTATTTAAAGGG CCTAATATGAAATAGGCTAACAAGCCAACTTCGATTGGAAATTAGAATTAAATCAAGAGTTTCCTCCATTAATGAAAAAG AATTTAGTTTCTTAATCAATCTACTATGTAGGCTTGTATAAAGGAATCTATCTTGTTATTCTACTTATGTTCTGTTTGAT CACTTTATAAGTTTGAAATTTTTATTTCCATTTTTGTCAGTCAGGCTTGTCAATAGCGCGCGAAAGCGGCGCTGCGGGGT GGAGGTCTCCTGTGACGGCGGTGCCTTTAGTGGCGCGGATAGCAATCTTGGCCGCTTTAGTGGCCAAAATCACAGCCGTC GCAGAGCTGTTTTACTGCTATAGGGATTAGGTTTTTTCGAGAGAGAAGAAGGTTCAGAAAGTAAAAATGCCCTCCGAATT AGAGCGTTGGGGCTATTAGTTGAGGACGTTTTCTATTTTTCAGTTCTATTAGTTGGGGTGTTATTGGTTTTTCAGTTCTA TTAGTTGGGGTATTTTTGGTATTTCAATTATTATGAGCTAGAGAGGCCCCCGAAAAACAAAACACATAGCCGCATTACAC CTTTCTTCTCCCTCAGACCCTTATTCCTGCACCTCAGCCACTTGGACCACCCTCCGGTGACTTCTCCAGCATCCTCCATC CTCCTTCATTTTTCTCCCTCCTTCCTCCTCCTCCTTCTTTAGTGTAGTGGCCATCCCGTTATGCGCTATACTGCTATTGC GTTTTTTGGGTCCGCTGCTACGCTCCGCTATCCGGGAATGACAAGCCTGGTCACAGTATGATTTTCTGTATCTGATATAT TGCTTTGTTCCTTTTTTCTATTATTTTTCTTCTTCACTTTTATTGAATGTTGGTATGTAATCAATGCCCTTTCTCTCTAT TAGTTTTCTTCTTCACTTTTATACAATGTTGGTATGTAATCAATGTCCTTGATTATTTGTTTTATTTACTGTTTCTTTTA AATATATATCCTGCTTCAGTGTTCTGTTCGTATACAATGATTATGTAAAGTTGATCAAGTTTTAATAGCATTTCTTCTTG ATCTCTAATTTCAGGAAAAGAGCTGGTATGCATCATCTCTTACATATTTGGGACAATTCTTGACTCTAGGGTTTTGCATA GGGTTCTGAGTTCTATCCTCCTTCCTCTTACCTTTCTCTTTTTAACTATTCTACCATGAGCCCTATGCAAAACAGCAGTA CCGCAAAATCCAAATCAAAAGTGACCCGAAGGGGTAAAGGCAAAAGGAAGAGATTTCTAGGAGAACCTAATGATCAAGTT GCAGATACCCCATCAGAATTCTCATTTGCTAAAGCCAAAATTGCAGTTGCGCAGATCTGCCAGTCAGTTGGCTACAAACG CTCTGAATATGATGCTCTTGAAACCTTGACTGATGTTTCTGTGAGATATATCCAAGCCATTGCGAGATCAGCTGCCTCCT TTGCTAATGCTTCCAATCGTACCGACTCCAACCTCTTTGACCTCATCAATGGCATTCATGATCTGTGCTCAGTTAAAGGA TTTCCTGGTGGTTCAGCAATGCACAAAAGTAATCTGCTGGGTTCCAAAGCTCTAAAAGAGATTATGAATTCTGTCAACCT CTCTAAGGCAGCACCCTCTACCAAACCAATTCCATTGAAAAACACTTCTGGAAGCCAAAATCCAAAGCTAACCATTGATT CTGGCACATCAATTTGTCGCTTCAAGAAAGCAAAAATACAATATTTGCACATACCAAGTTGGCTCCCAGATTTTCCTAAG GAAAACCTATATAATAGTCGTGATCAGGTTTTGGTTAAGGAGAGGAAATGCGGTGAGAAATTGTGGGAGCATTCACTTGC TGCGGAAGATTGCAGTGGTACTGTGGAGGAAAACATTTGTGTATTGCAGGCCAATGGCATCACTGAAAAAGAAGAGAAAG GCACCAGGATGGAGTTAGCAAAGGGAAGAGGAAGAGACAGAGTCAAGTTTAAACTCGGAAGGGGGGAAGAGAAGCAGATT GGATTGGGAATGAATATGATGAATGGGGTTTGTAAAGGAGGGAAACGAGTGTCATGGAAAAATGATTCTATGGTTGAGGA AAATGAAGATGAAAGGTGGGCTTTTAAGAGAAAGGTTAAGGTAGCATAGATATATAAATGATGTATGTAATCTGTCTCAA GCATTTTGTCACAACTAAATCAAATCTTTAATACTTTCATATATACCCGCGGACGAGGCATAATTTCAGCCATATACTGC AAAGTCAGTTATAATTAGAGTAGTTTCCTATTGAACATTGAATGTCATGAGTAAAGAATTAAACTTTGCATTGTGTCACT GTAACCTGTTGCTCAATTTTGTGGCATACCTTGAATTTGTTATTATTTTTTTATGCTTCGGAAAACTACTTGAATTTATT ATTAGATAGACTGCTCTCCCCTAAATTAAATCCCCTAAGAAATAAAATTACATTTCTTCTCCTTTCAATGCCTGTTTGTA TACAAGAGAAATATCCATCACTTAGTAGGCGAATATAGACTAAGTTTACTAATATATGTGTACACAACTTCAGTTCTTTA CATTGGTTATAGGGCCTTTAAACCAATGGCGACCACTCATGATCCAGTGAGAAATCACAAGAATGAGCAAACATCCAAGG GCAATTGGGGTGTAGTTAAGCGTCTCAATGGTTACTGGGTAAGAAACAGGCAATGAGAAGAGGATGGAGATGGTCACCAC CCAAAGAACCGCAATCCACCCAACAATGACCCCATAACTACCCAAGTTGAAAGGTCCTGGGACAAATCGCTTTTGTGCCA AGGTCACCCTGAAGAATATAGGAAGGCCATAAGCAATGTAGAGGACAATCACTGATATGGAGACCATAGCTTGAAATGCC ACCATGCTTACAAGAGAC
CDS sequence (LotjaGi5g1v0335000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCCTATGCAAAACAGCAGTACCGCAAAATCCAAATCAAAAGTGACCCGAAGGGGTAAAGGCAAAAGGAAGAGATT TCTAGGAGAACCTAATGATCAAGTTGCAGATACCCCATCAGAATTCTCATTTGCTAAAGCCAAAATTGCAGTTGCGCAGA TCTGCCAGTCAGTTGGCTACAAACGCTCTGAATATGATGCTCTTGAAACCTTGACTGATGTTTCTGTGAGATATATCCAA GCCATTGCGAGATCAGCTGCCTCCTTTGCTAATGCTTCCAATCGTACCGACTCCAACCTCTTTGACCTCATCAATGGCAT TCATGATCTGTGCTCAGTTAAAGGATTTCCTGGTGGTTCAGCAATGCACAAAAGTAATCTGCTGGGTTCCAAAGCTCTAA AAGAGATTATGAATTCTGTCAACCTCTCTAAGGCAGCACCCTCTACCAAACCAATTCCATTGAAAAACACTTCTGGAAGC CAAAATCCAAAGCTAACCATTGATTCTGGCACATCAATTTGTCGCTTCAAGAAAGCAAAAATACAATATTTGCACATACC AAGTTGGCTCCCAGATTTTCCTAAGGAAAACCTATATAATAGTCGTGATCAGGTTTTGGTTAAGGAGAGGAAATGCGGTG AGAAATTGTGGGAGCATTCACTTGCTGCGGAAGATTGCAGTGGTACTGTGGAGGAAAACATTTGTGTATTGCAGGCCAAT GGCATCACTGAAAAAGAAGAGAAAGGCACCAGGATGGAGTTAGCAAAGGGAAGAGGAAGAGACAGAGTCAAGTTTAAACT CGGAAGGGGGGAAGAGAAGCAGATTGGATTGGGAATGAATATGATGAATGGGGTTTGTAAAGGAGGGAAACGAGTGTCAT GGAAAAATGATTCTATGGTTGAGGAAAATGAAGATGAAAGGTGGGCTTTTAAGAGAAAGGTTAAGGTAGCATAG
Protein sequence (LotjaGi5g1v0335000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPMQNSSTAKSKSKVTRRGKGKRKRFLGEPNDQVADTPSEFSFAKAKIAVAQICQSVGYKRSEYDALETLTDVSVRYIQ AIARSAASFANASNRTDSNLFDLINGIHDLCSVKGFPGGSAMHKSNLLGSKALKEIMNSVNLSKAAPSTKPIPLKNTSGS QNPKLTIDSGTSICRFKKAKIQYLHIPSWLPDFPKENLYNSRDQVLVKERKCGEKLWEHSLAAEDCSGTVEENICVLQAN GITEKEEKGTRMELAKGRGRDRVKFKLGRGEEKQIGLGMNMMNGVCKGGKRVSWKNDSMVEENEDERWAFKRKVKVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 1 | 312 | 312 | 7.4E-71 | – | |
| PANTHER | 1 | 312 | 312 | 7.4E-71 | ||
| Gene3D | 37 | 118 | 82 | 4.8E-16 | ||
| SMART | 40 | 116 | 77 | 1.6E-22 | ||
| Pfam | 41 | 110 | 70 | 2.5E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIID complex | A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters. | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi5g1v0335000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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