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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0336700 |
| Transcript ID | LotjaGi5g1v0336700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G18260.1 Reticulon family protein; Swiss-Prot: sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9; TrEMBL-Plants: tr|A0A0B2PBP4|A0A0B2PBP4_GLYSO Reticulon-like protein; Found in the gene: LotjaGi5g1v0336700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65385366..65387547) extracted from Lotus japonicus Gifu genome v1.2.
GCCAAAGTCATACCTTTCCTCCCTCACTGCAATGACTTGATTAATTTCATTTTCTTGGTTACAAAGCTTAGAACAATAAC GTTTAGTGCATTATTATTACATATATTACAGGCCTTGCGGTGCATGATCAATCACAACAGTTCTAGCTAGCTAGGAACTT GGTTTCAAAGAATTAATCAGCAAATTAACACAATTTCAATCATCATTCAATTGTATTCGTAGCCATGTCAACCCGTTCCA AAGTATCAACACCTAGCTCAGGTTTGATCAGCCATCAAACACCACTCCACGCACTCCTTGGCGGAGGAAAGAGTAAGCTA TTTTTAAAACCTCACCTCATCATGTCTCCTTCATTATTAATGTCTCTAAATTCTTCTTGTCATGTTACTCTGTCATTGCT TTTTCAATAATATCAACGATGATTTCACATATCTTTCATTGAAATTTTTAGAGTTGCATCTTAAATTTCATATTTGAGTC ACATACAATCAAACTTTCGTAAATTCCCTTTAGTTAGGGTTCAATAGTTGTTGGATCAAGATTCTATGCACCAAATTTAA AACTTCATCATCAAATAGACAATTTGAATCTTTAAATAGAAAGATGTTTCATCATCACGCAAAAGATATCGATCCTGACT ACAATAAATTTAGGAAAAATCACCAACAATAAATCCAAATCTCAAATTTTTCCTTTATTTTTGTCTTCTTATCACATTAT ATTCTTTTTTCTCTTTTTTTTTCTTACTTTATTAATGGACAAAAGGGAGGAAGATGACAAGCTGAAATCATAACTTGAAA CTGTTCAATATCATGATTGGTAGAAAGCTTGTCTCCTATGACCTCTATTCCAAAATAATGGTTTGATGTGGTTGGGCTTG GGCCAAGTTGAGCGAACATGCACTAAACCCCAAAACATTGGGTGCATTATTGCTCATATTCCAAAGGCAAAGACCAAACA AAAAGTAAACAACATTTCTTTCTATTTATTTATTTATTTTTAATTTTTTTGCAGTTGCTGATGTGTTGCTATGGACAGAC AAGGTAACATCAGCAGCAGTAGTAGCTGGGTTCTCCATTGTTTGGTTTCTGTTTGAAGTTGCTGAATACAATCTTCTTAC TTTGGTTTGTCACACCCTCATAGCCTTTATGCTAATCCTCTTCATTTGGTACAATGCAGCTGGACTAGTCACATGGTAAT TAATCAAAATGAAACCTTACACTTAGTTGCGTAAATTAATTTGTTTGTGCAAACCATAGTTAAAATCATGTTTATTAATT GCAGGAGAATTCCTAAAATCAACGATATTGCAATCCCAGAATCCACCATTAGATATTTCCACACAAAGCTCAACTTGTTC TTGAGGAAATTTTACGAAATTTCAACTGGCCAAGACCTGAAACTCTTCTTTGTGGTATTAACAAATTAACAAACCATTTT TCACTTATTCTAATAAGTAATTTCTACCAACACACCCATATTTTGTTAATTAATTAATGTATTTGTTAACTGATTGAATT TCAGACAATATCTGGTCTCGTGATCGTTTCAATTATTGGGAATTACTTCACCATTGCTAATCTTCTATACCTCAGTGAGA TCCCAATTCCCAAACACATTCCAATTTTTATTTTCTTATGGCATAGTTATATATGAATTAAGCTTCCTAATTGAGCTTGG CTTATAATAATTGTTGACTATTCTTTTTTCCAGTGTTTTTGTGCTTCGTGACAGTTCCTGTTATGTATGAGCGGTATGAA TATGAGGTGGATTATCTAGCAAGTAAAGGAAACCAAGACCTGAGGAGATTGTTCAGCACATTGGATTCTAAATTTCTCAA CAAGATTCCTAGGGGACCTGTCAAAGAAAAGAAGTTCATGTGAAGTTTAGATGCTTGAAACAACATAAAATTAAAGCAGA TATGTCCAGTAATCAATCTGTGTGCATGTTGCCAATTTAAATGAGTTATGGCTATCAAAGAAATTTAATCTTTAAATTAT TTCAGTGCATGTTGCCGATTTCCTGCAGTTGAATGTTTAAATTCCTGAATATATGTTTTAGTTGCTACGTCTGACAGAAT TCTAATACAAATACTCAAGTTATACGTAGAATCTCATTAAACTCACCAATCTTGTAATAAAAAAAACTCACCAATCCGGT GGACCAATAGTCGGATGGGTCA
CDS sequence (LotjaGi5g1v0336700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACCCGTTCCAAAGTATCAACACCTAGCTCAGGTTTGATCAGCCATCAAACACCACTCCACGCACTCCTTGGCGG AGGAAAGATTGCTGATGTGTTGCTATGGACAGACAAGGTAACATCAGCAGCAGTAGTAGCTGGGTTCTCCATTGTTTGGT TTCTGTTTGAAGTTGCTGAATACAATCTTCTTACTTTGGTTTGTCACACCCTCATAGCCTTTATGCTAATCCTCTTCATT TGGTACAATGCAGCTGGACTAGTCACATGGAGAATTCCTAAAATCAACGATATTGCAATCCCAGAATCCACCATTAGATA TTTCCACACAAAGCTCAACTTGTTCTTGAGGAAATTTTACGAAATTTCAACTGGCCAAGACCTGAAACTCTTCTTTGTGA CAATATCTGGTCTCGTGATCGTTTCAATTATTGGGAATTACTTCACCATTGCTAATCTTCTATACCTCATGTTTTTGTGC TTCGTGACAGTTCCTGTTATGTATGAGCGGTATGAATATGAGGTGGATTATCTAGCAAGTAAAGGAAACCAAGACCTGAG GAGATTGTTCAGCACATTGGATTCTAAATTTCTCAACAAGATTCCTAGGGGACCTGTCAAAGAAAAGAAGTTCATGTGA
Protein sequence (LotjaGi5g1v0336700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTRSKVSTPSSGLISHQTPLHALLGGGKIADVLLWTDKVTSAAVVAGFSIVWFLFEVAEYNLLTLVCHTLIAFMLILFI WYNAAGLVTWRIPKINDIAIPESTIRYFHTKLNLFLRKFYEISTGQDLKLFFVTISGLVIVSIIGNYFTIANLLYLMFLC FVTVPVMYERYEYEVDYLASKGNQDLRRLFSTLDSKFLNKIPRGPVKEKKFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 10 | 211 | 202 | 1.8E-87 | – | |
| PANTHER | 10 | 211 | 202 | 1.8E-87 | – | |
| ProSiteProfiles | 30 | 212 | 183 | 27.688 | ||
| Pfam | 31 | 181 | 151 | 3.2E-38 | ||
| Phobius | 33 | 56 | 24 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 57 | 61 | 5 | - | – | |
| Phobius | 62 | 84 | 23 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 85 | 127 | 43 | - | – | |
| Phobius | 128 | 148 | 21 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 149 | 153 | 5 | - | – | |
| Phobius | 154 | 171 | 18 | - | – | |
| Phobius | 172 | 212 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0336700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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