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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0337500 |
| Transcript ID | LotjaGi5g1v0337500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative; TAIR: AT1G68390.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|Q9MIY2|NU4LM_DANRE NADH-ubiquinone oxidoreductase chain 4L; TrEMBL-Plants: tr|A0A072W1N5|A0A072W1N5_MEDTR Core-2/I-branching enzyme; Found in the gene: LotjaGi5g1v0337500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65484036..65486774) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTAACGGAATGCATATGTTAACAATTTGTAAATACAACAGGTTTGCAAAACCAGCCATAACAGTTGGCCTAGTTCAG CTTTTCTGAAGAAGCTTTCGTTACTTCTAACGGAGGAAAAACCAAAGCGCAAATACAATAAAGCCAGAAACAGAAGACCC TCCTTCCTATTCTTCATTCTTCACTCTTCAAAGCCATCAACACCTGTTGATGGGTCTCATAGTGCCATAAATTTGATCCA AAGGAGATAGCCTTTTTCATCTGCTTTTTCTCTATCTCTTTCTAGTTTTCTTTATCATCAGTTTCAATTGTTTTATTGCA TATTTTTCTGATTACTCTATAGCCCAACATTACAAGCATTAACAGTAAAAGTTTCATTGTTGTCTCTCCAAAAATGAAGG CCTCAAATACTCAATACCCATTAAACTCTGTTTCTAAACTCTGCAACATTCAATTCCACTTTCTTCATCTCCTATCCTAT ATTCTAATCTTGGTATTTGGTCTAACCCTTGGAGTTATCTTCAGTTTCTATCTGAAGGACTGCATCTTTAGCCTACAATT CACTCAGTTCTCGCTCTCCGCCTTACCTCGAGCCCCGCCTCTATCACCACCACCGCCGCCGCCAATTGAAAAGCCAGCAG TTTCTAATCACAGCCGTGTGGGATTGAAGGAGTTTCTTAAGCCTCCTGGTGTTGTTATGCATGATATGAATGAGGAGGAA TTGATGTGGAGAGCTTCGATGACTGCGAAGATCAATGAGTACCCGTTTGATCGTGTTCCTAAAGTTGCTTTCATGTTTTT GACAAGGGGTCCTGTGTTTCTAGCACCTTTGTGGGAGCAATTCTTCAAAGGGCATGAAGGGTATTACTCCATTTACGTGC ATGCCAATCCATCTCATAATGGAACATACCCGGAGAAGTCAGTGTTTCACGGTCGGAGAGTTCCCAGTCAGGTCAGTTAG TTTCTCAATTCTTCAGTTTCTGGTTACATTACATTGATTATATTTATAGCATTGTTCTGTTTCCTTAAACTGCATAATGA AAATGATTATTGCTTGGATAATTGAAACAAAGCATAGGGTACATATACTATATAGTCCTATGGAAACCTCTTGTGGTATT TGTGGCTGTGCAAATTGCTTGATAGAGAGAACAAATAAAGAAAAGCCTTAGTAAAGAGGAAAAGGGGGAGAGTGAAATAA AACACAAAACAGAACAGAGGCATATTGTGCTAGGATAAACTTCTGATAAGAATTTCTTATTCAAATGTTTGAATTTTATG ATAGTTTTAAGGAGTGAATGATCATCTTGGTCCTTGAAAGATTTTTCTATTAGGAAGTTTGTCCATGAAAGAAGTAAATA CCTTCAAGAGTATCTTAATATGTAATTGCCTGTTTGCATTCTAGTTGAAATAAAAGTTAAAGTTGGATGAGGAAGCTTTC ACCCTATATGCATTGTAAACTGTGTTTTAAGTTTTTGTTGTCATGGAAATGTGAGTGAATGTGTAGTCAAACATACTTGC AATTGTTGGTTAAGTTAGTCTAATTAGATTTGATAAACTAAAATGTCGGTCAATTTAGATCTTGTAGCATTTATTTCAGT GAGTCAGTGCACACAAAATTTTTAGGCACCAAGTTTACTACATTCACTCTAGTTGAGTATAAAATAATTTTAAAATGTTA GAAGTAAGACATTCAGTGTAAATTTAAATGATTGTTGAGATATGACATAAGGGTTTGAGTAGAGAAACAAAATTGTCACT TTTTTTGTTTTGGTATTCATATTTTGACTAGTCACTTTTAAGCAGAATAATTTGGCAAGTCTCAGTTCAATTTTTGTGTA CCATTTGTTTCTGATTAGGTCATATATTTCTAATTACTAACTACAACAATTTGTTTCAATATAGAAAGAAACCATGATGA CTAAGTACTCTTCATTTGGTAATGCAGGAAGTGGAATGGGGCAATCCCAACATGATTGAAGCAGAGCGTCGCTTGCTAGC AAATGCACTCCTTGACATTTCAAACCAACGATTTGTTCTTGTTTCAGAATCCTGCATTCCACTCTTCAACTTCACAACCA TCTACTCTTATTTAATAAACTCCACCCAAAACTATGTCATGGCCTTTGATGATCCTAGCCCAGTTGGTCGTGGCCGCTAC AGCATCCAAATGTTACCTGAAATCAGCCTCTGGCAGTGGAGAAAAGGGTTCCAGTGGTTTGAAATGGACAGAGAACTCGC AGTTGAAGTGGTTTCTGACAGAACATACTTCCCAGTTTTTCAACAGTACTGCAAAGGTTCATGCTATGCTGATGAACATT ACTTGCCAACGTTTGTGAACATCATGTTTGGGGAGAGGAACTCAAATAGGAGCTTGACTTGGGTTGACTGGTCAAGGGGT GGACCCCACCCTGCTTCTTTTACTAGGTCTGATGTGACTGTTGAGTTCTTGGAGAGGTTAAGGAGCAAGAGGTGCAAGTA TAATGGGAAAAGCAGCAATGTTTGCTATCTTTTTGCTAGGAAGTTCTTGCCTAGTACTCTGTCCAGGCTTGTTAAGATTG CACCAGAGGTCATGCATTTTGAGTACCACCATAGGCACAAAAACAGAAGCTTATCACTACAACCTACCATTTAATTCATT TTTTTCTTCTTGCAAGTTTTTCTATTATCTGGTATAGAGTATAGACTTTTTTTCATTAGCCTTATATGGTATAGAGTACA GACTCTTTTTCATCAATAT
CDS sequence (LotjaGi5g1v0337500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCCTCAAATACTCAATACCCATTAAACTCTGTTTCTAAACTCTGCAACATTCAATTCCACTTTCTTCATCTCCT ATCCTATATTCTAATCTTGGTATTTGGTCTAACCCTTGGAGTTATCTTCAGTTTCTATCTGAAGGACTGCATCTTTAGCC TACAATTCACTCAGTTCTCGCTCTCCGCCTTACCTCGAGCCCCGCCTCTATCACCACCACCGCCGCCGCCAATTGAAAAG CCAGCAGTTTCTAATCACAGCCGTGTGGGATTGAAGGAGTTTCTTAAGCCTCCTGGTGTTGTTATGCATGATATGAATGA GGAGGAATTGATGTGGAGAGCTTCGATGACTGCGAAGATCAATGAGTACCCGTTTGATCGTGTTCCTAAAGTTGCTTTCA TGTTTTTGACAAGGGGTCCTGTGTTTCTAGCACCTTTGTGGGAGCAATTCTTCAAAGGGCATGAAGGGTATTACTCCATT TACGTGCATGCCAATCCATCTCATAATGGAACATACCCGGAGAAGTCAGTGTTTCACGGTCGGAGAGTTCCCAGTCAGGA AGTGGAATGGGGCAATCCCAACATGATTGAAGCAGAGCGTCGCTTGCTAGCAAATGCACTCCTTGACATTTCAAACCAAC GATTTGTTCTTGTTTCAGAATCCTGCATTCCACTCTTCAACTTCACAACCATCTACTCTTATTTAATAAACTCCACCCAA AACTATGTCATGGCCTTTGATGATCCTAGCCCAGTTGGTCGTGGCCGCTACAGCATCCAAATGTTACCTGAAATCAGCCT CTGGCAGTGGAGAAAAGGGTTCCAGTGGTTTGAAATGGACAGAGAACTCGCAGTTGAAGTGGTTTCTGACAGAACATACT TCCCAGTTTTTCAACAGTACTGCAAAGGTTCATGCTATGCTGATGAACATTACTTGCCAACGTTTGTGAACATCATGTTT GGGGAGAGGAACTCAAATAGGAGCTTGACTTGGGTTGACTGGTCAAGGGGTGGACCCCACCCTGCTTCTTTTACTAGGTC TGATGTGACTGTTGAGTTCTTGGAGAGGTTAAGGAGCAAGAGGTGCAAGTATAATGGGAAAAGCAGCAATGTTTGCTATC TTTTTGCTAGGAAGTTCTTGCCTAGTACTCTGTCCAGGCTTGTTAAGATTGCACCAGAGGTCATGCATTTTGAGTACCAC CATAGGCACAAAAACAGAAGCTTATCACTACAACCTACCATTTAA
Protein sequence (LotjaGi5g1v0337500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKASNTQYPLNSVSKLCNIQFHFLHLLSYILILVFGLTLGVIFSFYLKDCIFSLQFTQFSLSALPRAPPLSPPPPPPIEK PAVSNHSRVGLKEFLKPPGVVMHDMNEEELMWRASMTAKINEYPFDRVPKVAFMFLTRGPVFLAPLWEQFFKGHEGYYSI YVHANPSHNGTYPEKSVFHGRRVPSQEVEWGNPNMIEAERRLLANALLDISNQRFVLVSESCIPLFNFTTIYSYLINSTQ NYVMAFDDPSPVGRGRYSIQMLPEISLWQWRKGFQWFEMDRELAVEVVSDRTYFPVFQQYCKGSCYADEHYLPTFVNIMF GERNSNRSLTWVDWSRGGPHPASFTRSDVTVEFLERLRSKRCKYNGKSSNVCYLFARKFLPSTLSRLVKIAPEVMHFEYH HRHKNRSLSLQPTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 3 | 397 | 395 | 1.8E-223 | – | |
| PANTHER | 3 | 397 | 395 | 1.8E-223 | – | |
| Phobius | 21 | 47 | 27 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 48 | 414 | 367 | - | – | |
| Pfam | 131 | 357 | 227 | 6.3E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0337500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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