Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0339600 |
| Transcript ID | LotjaGi5g1v0339600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of Vps4 activity in the MVB pathway protein; TAIR: AT1G25420.1 Regulator of Vps4 activity in the MVB pathway protein; Swiss-Prot: sp|Q3ZBV1|IST1_BOVIN IST1 homolog; TrEMBL-Plants: tr|I3T1I6|I3T1I6_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0339600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65655815..65660161) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAAGGGTGAAAAAGCAAGCATAAGCGTGGTTATTTTTGCAGTCTCGACTCAAGCTGTGTGAGCTCAGTTGACAGTGG CATCATCATCACCATCTTCATCATCTCAATGTCAATTCTAAATCAACTCTTCAGCAGAGGCGTGTTTTCTACTCGATGGT AATTTCCCCTATCTTTCACGCTTCTCTCTGTATTTCATTCATTCAATTCCATGCTTGATCAGTTGATCCGCTTCAATTGT TTAAATATTGAGTTTTATGATAATACCCATTACCCATTCTTCAATACCCGATTTTTGGTTTTGGGGTACATGACTTTTTT GTTAGAAAGTTTGAATTTTTAGGTTTTTGTTTGTGAATCACTGGATTGTAGGTTTATAATTTAATCCTATCATACCCTTA TAAGTAATTTGGTTTTTTTTTGTTGTCAAAATTCAATTTTTAGTATATTATGAGGTATATCTGTTCAAATCTAATGTGTA TAGCTAGATTTTGTGTTATTGGGACATAACATTTGTTGGAAGTAAGCTCTGTTGGTAGAACACTGGAAGAGCTCAACTAT GTTTGGTTTCCGGTTTGGAAGTCCGTTTGGGACATTGGAATTCGAGATCACACATTCCAATGCCCCAAACGTGAAAGAGG CTTTGGACCTCCGTTGGGCGAAAACACTTTCAAACTGAAAACCAAACACAGTTGTAGATATTGGAAAGTTTGTCTTGGTT TATACCCTTAGGTTTAAGTGAATGTTTTATAGATTGTTATCCGGATACTCCTTCAGTCTGTAGTTACTTACCCTAGTTAA CATGTTTTTCATTTTTTTTTTTTCATCTTCGACTTTGGTAGCAAAACATGCCTGAATCTGTCGATCTCGCGCATTAAGCT TCTACAAAACAAGAGAGATGTGCAGCTGAAACAAATGCGTAGGGAGATATCACAATTCTTGCAGGCTGGCCAAGAGGCAA TTGCTAGAATTCGTGTAATCCTTCAAATCTTGGTGATTGGCTGCTAGTTTTTCGATCTCCACTTCCCTGTGTTGTGACTT GTGTTTTGTATATTGTATTGATTTAAATAGGTGGAGCATATCATACGAGAACAAAATATCTGGGCTGCGTACGAAATATT GGAGTTATTCTGTGAATTTGTTCTTGCACGTGTACCTATAATTGAGAGCCAGAAGTAAGTCCAGAAATCATTAAAAAATA TTCTTTTTGGACATACTGTGGAATGTGGATTATCTTATTCTTATGGATTAACAGCCACAGATTAATTTCTGGACTCATAC AATTCAGTGTGTTTTTCTTATATCCACAAATTTCTGTTACATTCTGGTTATAGCTTGGTCAAGTTTTTTTGATGCAATTT GGCAAAAATGTGAACCACAGTCCACAGTGATTGCTTGTTGGATCTTTTGGCTTCACAACATTTTAGTAGTGGGAAAAGTC TCATGTTAAGTGAGCTTGTGTCTAAAGTGAGAAAGTAAGGGTTGTCCACCCTGGATTTTTATGGGATAAGAGTATAGCGT ACTCTAAATTAAATCGATGGTGGACATAACCCTATTTACTCACTATAGAGGCAAGTTCACTTTAGAGCTGCAATGCTTAT GAATCTTTAAAGGGGTTTTGAAAAGGGTAAAATATATGTTTCTGAACATAGATGGGTTATAACATAAGATTTCAAACTTG GCTCACCAAAATTGATTCGAACAAAAACTTTAGAAAGGAAAAGTGTAATTTACCTATACTTGTATAACACACACACATAC TCATGTTGTGCGTGTATCACATTTGACACTGGCTAATGGCTATACTGAAATATGTGATGCTTCTAACTGCCGCATTGACT GTATACTGAAATATATATTCATTGTATGCATGTTTATTAAAGGAAACTATTAGCTTTTAAATGAATAATTTCTGCTTAAA GCATGTAGTGGTGGTCCTCCATGCATTGAAAATTTTCAATAAATTTTCAGCTAATTCAATAAAGTAGGTATTTATTACAC GCCACACTAAATCATTTTCATTTTTCACTGCTTAGAATATTCATTTTCAGTACTGAGTTAAGTTTTCAAACCATAATGCA ATTTCTGGTACAATTTATGCCCAACTGTTTCTTTAATTAAACTTGAATGCATAATAGGGAATGCCCCTCAGAATTGCGAG AAGCCATTGCAAGTATAATTTTTGCTGCTCCTAGATGTTCAGATATACCAGACTTATTACACATCAAAAACTTGTTTACC ACCAAGTATGGAAAAGAATTTGTGACTGCAGTATCTGAACTTCGTCCTGATTCAGGCGTGAACCGCACGGTAAATTATCT TTAATTGCAGTTTCTCGATTGCAATTTGCAAACACCAAATAACTTGACTGTGTTGGAGTATTAACAATTGATCAATTGCT TACTATCATTATGATGATTTCAGATTATTGAAAAGCTTTCAGTTAGTGCCCCATCTGGAGAGGTAAAACTCAAGGTCTTG AAGGAGATTGCGAAAGAATACAATCTAGCTTGGGATTCTTCTAAAACTGAGGCTGAATTTAGGAAAAATCATGAAGATCT CCTGGTAATTTTATCGGTTAATGCACTATATCTCCTTCAGTGTTGTTCATTAAGAAACAATTTTGTTAACATTAATCCTT AGGGCTGAGGTTAAGGATTTAAATATGAAATTTTTTCATAGAAAAAGAATGATTATTACATTGAAAGTATAACTGTGTAA TCAATGTTTTAAAACTTTTCTGTTTTTGTATCCTTATCATCATCCCTTTGACAAAAATCATTAAAAAAAATTATTTTACT CAGTACTAGATCCATGTGCTATCATATAACCTGCCTTTGATGTTAGTTCGCCTCTGTATAACTAATAAGTTCTCACTTGC CTGCGCTCTGATGGTGCTCCTACACCTTTATCCCTTATACTGATACCTTAAACTATAGCCAATTTCATCATAACCTTAGT GTTCTTGGATCTTGATGTGATAGTTCTACCATGAGCATTTAGAAGTGAGTCTAGCACTCTAGCTGTTGAGTATATTTTTC TCCAATGATCCAGTATCCTCTTACAGCTGCAGGGTTTTTAGTGTGAAACCGACTTTATTTCTTTTTCAAACATGTTAATG TCTTTCTTGAATACCATGTCCCCAGTTTTGTCAAACTTAAACTCATTTGAGTGATTTCCTTTTATCATTCAGTGACTGAA TTGTTTGTAGTTAGAGTTCATTTATCATTTGTTAATATTTTCTATTCTTTATTTTATGAAGTAAATTTTCTGTCAACTTG TTCTCACTATTTAGTGCTGTTGGTTTGTCTTTTGTCATTAGCATCTCAATCGATGTGAATTTATCAGTTAAAATACTTGG TTGTCTACTACTTCTCTGTCGTAGCATTAGACTGTTAGTAGTTTTCTCAGTTTTTTGTTATTGTCATTATGATTTTTTTA TATTACCTTAGGGTGGAACAAAACAAGTTGGAGTTGGGGCTGCACCTTCTCGTACTCCCAGCAAAAAGGGTTCTGATTAT TCCTCACCGAGTACTATGGAACATTCTATCAAATCTAACCATGACAAACAAGAACATAAACACCTTGAAGCTCCCATCCC TTCTAACAATAATTCATGGTTAAATACCAATGAAATTGAAGAGTCACACAAGAACAACGGTGTCCCCGTTAGAGATGCTA AGAGTGAGACCAAACTACCATCCTCTGATGTATTAGAGAAGGCCCGAGCTGCCATTGCTTCTGCTGATCGTGCAACTGCA GCTGCTCGTGCTGCTGCTGCGCTAGTACACAGTAATTTTGGATCATTGAAGCGGGACAATTAATCTTACAGTGCTCAAAG TGCTTTGCTGAGGATCTTAAGGTTGGAACAACGTTAAGACCTGAATGCCAATGGAAAAATATGTTCTTTGTTATGAAGAT AACGGTTTCTTACAGTATTTATTGTACATTCTATAATATTAATACATGTATATTATTATTATGGTAAAGGAATGGAATGC TGAACTTGCATAAATCCATCATAGTTCTTGCGAATCTGATGTTTGTGTATCATGTGTTGAATGATGTTACTGCTACAATG TGATTCAAATAACAGTTTTTTACCTAGGGAATGATTGTGTGCATATCTTGTGTTACTCCGTTCCATCATACTTGTGTGCA TTTTTAAACACAAGTATGCTGTCAATTTTCATAATGGTTATATCTTATACAAGTTGGGTGGTTTGCACTGTTCTTCCTGA CGGGGTGTAAGGATAACAGAACTTCCACATCTGCTTGGTGTGTTTCATACAAGCAACAAAAGTTAAATCCAACTTCTTGG ATTAATTTTTCGGACCATATCTGCATT
CDS sequence (LotjaGi5g1v0339600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATTCTAAATCAACTCTTCAGCAGAGGCGTGTTTTCTACTCGATGCAAAACATGCCTGAATCTGTCGATCTCGCG CATTAAGCTTCTACAAAACAAGAGAGATGTGCAGCTGAAACAAATGCGTAGGGAGATATCACAATTCTTGCAGGCTGGCC AAGAGGCAATTGCTAGAATTCGTGTGGAGCATATCATACGAGAACAAAATATCTGGGCTGCGTACGAAATATTGGAGTTA TTCTGTGAATTTGTTCTTGCACGTGTACCTATAATTGAGAGCCAGAAGGAATGCCCCTCAGAATTGCGAGAAGCCATTGC AAGTATAATTTTTGCTGCTCCTAGATGTTCAGATATACCAGACTTATTACACATCAAAAACTTGTTTACCACCAAGTATG GAAAAGAATTTGTGACTGCAGTATCTGAACTTCGTCCTGATTCAGGCGTGAACCGCACGATTATTGAAAAGCTTTCAGTT AGTGCCCCATCTGGAGAGGTAAAACTCAAGGTCTTGAAGGAGATTGCGAAAGAATACAATCTAGCTTGGGATTCTTCTAA AACTGAGGCTGAATTTAGGAAAAATCATGAAGATCTCCTGGGTGGAACAAAACAAGTTGGAGTTGGGGCTGCACCTTCTC GTACTCCCAGCAAAAAGGGTTCTGATTATTCCTCACCGAGTACTATGGAACATTCTATCAAATCTAACCATGACAAACAA GAACATAAACACCTTGAAGCTCCCATCCCTTCTAACAATAATTCATGGTTAAATACCAATGAAATTGAAGAGTCACACAA GAACAACGGTGTCCCCGTTAGAGATGCTAAGAGTGAGACCAAACTACCATCCTCTGATGTATTAGAGAAGGCCCGAGCTG CCATTGCTTCTGCTGATCGTGCAACTGCAGCTGCTCGTGCTGCTGCTGCGCTAGTACACAGTAATTTTGGATCATTGAAG CGGGACAATTAA
Protein sequence (LotjaGi5g1v0339600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSILNQLFSRGVFSTRCKTCLNLSISRIKLLQNKRDVQLKQMRREISQFLQAGQEAIARIRVEHIIREQNIWAAYEILEL FCEFVLARVPIIESQKECPSELREAIASIIFAAPRCSDIPDLLHIKNLFTTKYGKEFVTAVSELRPDSGVNRTIIEKLSV SAPSGEVKLKVLKEIAKEYNLAWDSSKTEAEFRKNHEDLLGGTKQVGVGAAPSRTPSKKGSDYSSPSTMEHSIKSNHDKQ EHKHLEAPIPSNNNSWLNTNEIEESHKNNGVPVRDAKSETKLPSSDVLEKARAAIASADRATAAARAAAALVHSNFGSLK RDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 320 | 320 | 4.4E-163 | – | |
| PANTHER | 1 | 320 | 320 | 4.4E-163 | ||
| Gene3D | 5 | 193 | 189 | 2.6E-74 | ||
| Pfam | 18 | 181 | 164 | 9.5E-65 | ||
| MobiDBLite | 198 | 286 | 89 | - | – | |
| MobiDBLite | 217 | 231 | 15 | - | – | |
| MobiDBLite | 232 | 246 | 15 | - | – | |
| MobiDBLite | 247 | 266 | 20 | - | – | |
| MobiDBLite | 267 | 286 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi5g1v0339600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…