Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0339600 |
| Transcript ID | LotjaGi5g1v0339600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of Vps4 activity in the MVB pathway protein; TAIR: AT1G25420.1 Regulator of Vps4 activity in the MVB pathway protein; Swiss-Prot: sp|Q3ZBV1|IST1_BOVIN IST1 homolog; TrEMBL-Plants: tr|C6TKA2|C6TKA2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0339600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65656601..65659637) extracted from Lotus japonicus Gifu genome v1.2.
CTTACCCTAGTTAACATGTTTTTCATTTTTTTTTTTTCATCTTCGACTTTGGTAGCAAAACATGCCTGAATCTGTCGATC TCGCGCATTAAGCTTCTACAAAACAAGAGAGATGTGCAGCTGAAACAAATGCGTAGGGAGATATCACAATTCTTGCAGGC TGGCCAAGAGGCAATTGCTAGAATTCGTGTAATCCTTCAAATCTTGGTGATTGGCTGCTAGTTTTTCGATCTCCACTTCC CTGTGTTGTGACTTGTGTTTTGTATATTGTATTGATTTAAATAGGTGGAGCATATCATACGAGAACAAAATATCTGGGCT GCGTACGAAATATTGGAGTTATTCTGTGAATTTGTTCTTGCACGTGTACCTATAATTGAGAGCCAGAAGTAAGTCCAGAA ATCATTAAAAAATATTCTTTTTGGACATACTGTGGAATGTGGATTATCTTATTCTTATGGATTAACAGCCACAGATTAAT TTCTGGACTCATACAATTCAGTGTGTTTTTCTTATATCCACAAATTTCTGTTACATTCTGGTTATAGCTTGGTCAAGTTT TTTTGATGCAATTTGGCAAAAATGTGAACCACAGTCCACAGTGATTGCTTGTTGGATCTTTTGGCTTCACAACATTTTAG TAGTGGGAAAAGTCTCATGTTAAGTGAGCTTGTGTCTAAAGTGAGAAAGTAAGGGTTGTCCACCCTGGATTTTTATGGGA TAAGAGTATAGCGTACTCTAAATTAAATCGATGGTGGACATAACCCTATTTACTCACTATAGAGGCAAGTTCACTTTAGA GCTGCAATGCTTATGAATCTTTAAAGGGGTTTTGAAAAGGGTAAAATATATGTTTCTGAACATAGATGGGTTATAACATA AGATTTCAAACTTGGCTCACCAAAATTGATTCGAACAAAAACTTTAGAAAGGAAAAGTGTAATTTACCTATACTTGTATA ACACACACACATACTCATGTTGTGCGTGTATCACATTTGACACTGGCTAATGGCTATACTGAAATATGTGATGCTTCTAA CTGCCGCATTGACTGTATACTGAAATATATATTCATTGTATGCATGTTTATTAAAGGAAACTATTAGCTTTTAAATGAAT AATTTCTGCTTAAAGCATGTAGTGGTGGTCCTCCATGCATTGAAAATTTTCAATAAATTTTCAGCTAATTCAATAAAGTA GGTATTTATTACACGCCACACTAAATCATTTTCATTTTTCACTGCTTAGAATATTCATTTTCAGTACTGAGTTAAGTTTT CAAACCATAATGCAATTTCTGGTACAATTTATGCCCAACTGTTTCTTTAATTAAACTTGAATGCATAATAGGGAATGCCC CTCAGAATTGCGAGAAGCCATTGCAAGTATAATTTTTGCTGCTCCTAGATGTTCAGATATACCAGACTTATTACACATCA AAAACTTGTTTACCACCAAGTATGGAAAAGAATTTGTGACTGCAGTATCTGAACTTCGTCCTGATTCAGGCGTGAACCGC ACGGTAAATTATCTTTAATTGCAGTTTCTCGATTGCAATTTGCAAACACCAAATAACTTGACTGTGTTGGAGTATTAACA ATTGATCAATTGCTTACTATCATTATGATGATTTCAGATTATTGAAAAGCTTTCAGTTAGTGCCCCATCTGGAGAGGTAA AACTCAAGGTCTTGAAGGAGATTGCGAAAGAATACAATCTAGCTTGGGATTCTTCTAAAACTGAGGCTGAATTTAGGAAA AATCATGAAGATCTCCTGGTAATTTTATCGGTTAATGCACTATATCTCCTTCAGTGTTGTTCATTAAGAAACAATTTTGT TAACATTAATCCTTAGGGCTGAGGTTAAGGATTTAAATATGAAATTTTTTCATAGAAAAAGAATGATTATTACATTGAAA GTATAACTGTGTAATCAATGTTTTAAAACTTTTCTGTTTTTGTATCCTTATCATCATCCCTTTGACAAAAATCATTAAAA AAAATTATTTTACTCAGTACTAGATCCATGTGCTATCATATAACCTGCCTTTGATGTTAGTTCGCCTCTGTATAACTAAT AAGTTCTCACTTGCCTGCGCTCTGATGGTGCTCCTACACCTTTATCCCTTATACTGATACCTTAAACTATAGCCAATTTC ATCATAACCTTAGTGTTCTTGGATCTTGATGTGATAGTTCTACCATGAGCATTTAGAAGTGAGTCTAGCACTCTAGCTGT TGAGTATATTTTTCTCCAATGATCCAGTATCCTCTTACAGCTGCAGGGTTTTTAGTGTGAAACCGACTTTATTTCTTTTT CAAACATGTTAATGTCTTTCTTGAATACCATGTCCCCAGTTTTGTCAAACTTAAACTCATTTGAGTGATTTCCTTTTATC ATTCAGTGACTGAATTGTTTGTAGTTAGAGTTCATTTATCATTTGTTAATATTTTCTATTCTTTATTTTATGAAGTAAAT TTTCTGTCAACTTGTTCTCACTATTTAGTGCTGTTGGTTTGTCTTTTGTCATTAGCATCTCAATCGATGTGAATTTATCA GTTAAAATACTTGGTTGTCTACTACTTCTCTGTCGTAGCATTAGACTGTTAGTAGTTTTCTCAGTTTTTTGTTATTGTCA TTATGATTTTTTTATATTACCTTAGGGTGGAACAAAACAAGTTGGAGTTGGGGCTGCACCTTCTCGTACTCCCAGCAAAA AGGGTTCTGATTATTCCTCACCGAGTACTATGGAACATTCTATCAAATCTAACCATGACAAACAAGAACATAAACACCTT GAAGCTCCCATCCCTTCTAACAATAATTCATGGTTAAATACCAATGAAATTGAAGAGTCACACAAGAACAACGGTGTCCC CGTTAGAGATGCTAAGAGTGAGACCAAACTACCATCCTCTGATGTATTAGAGAAGGCCCGAGCTGCCATTGCTTCTGCTG ATCGTGCAACTGCAGCTGCTCGTGCTGCTGCTGCGCTAGTACACAGTAATTTTGGATCATTGAAGCGGGACAATTAA
CDS sequence (LotjaGi5g1v0339600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTAGGGAGATATCACAATTCTTGCAGGCTGGCCAAGAGGCAATTGCTAGAATTCGTGTGGAGCATATCATACGAGA ACAAAATATCTGGGCTGCGTACGAAATATTGGAGTTATTCTGTGAATTTGTTCTTGCACGTGTACCTATAATTGAGAGCC AGAAGGAATGCCCCTCAGAATTGCGAGAAGCCATTGCAAGTATAATTTTTGCTGCTCCTAGATGTTCAGATATACCAGAC TTATTACACATCAAAAACTTGTTTACCACCAAGTATGGAAAAGAATTTGTGACTGCAGTATCTGAACTTCGTCCTGATTC AGGCGTGAACCGCACGATTATTGAAAAGCTTTCAGTTAGTGCCCCATCTGGAGAGGTAAAACTCAAGGTCTTGAAGGAGA TTGCGAAAGAATACAATCTAGCTTGGGATTCTTCTAAAACTGAGGCTGAATTTAGGAAAAATCATGAAGATCTCCTGGGT GGAACAAAACAAGTTGGAGTTGGGGCTGCACCTTCTCGTACTCCCAGCAAAAAGGGTTCTGATTATTCCTCACCGAGTAC TATGGAACATTCTATCAAATCTAACCATGACAAACAAGAACATAAACACCTTGAAGCTCCCATCCCTTCTAACAATAATT CATGGTTAAATACCAATGAAATTGAAGAGTCACACAAGAACAACGGTGTCCCCGTTAGAGATGCTAAGAGTGAGACCAAA CTACCATCCTCTGATGTATTAGAGAAGGCCCGAGCTGCCATTGCTTCTGCTGATCGTGCAACTGCAGCTGCTCGTGCTGC TGCTGCGCTAGTACACAGTAATTTTGGATCATTGAAGCGGGACAATTAA
Protein sequence (LotjaGi5g1v0339600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRREISQFLQAGQEAIARIRVEHIIREQNIWAAYEILELFCEFVLARVPIIESQKECPSELREAIASIIFAAPRCSDIPD LLHIKNLFTTKYGKEFVTAVSELRPDSGVNRTIIEKLSVSAPSGEVKLKVLKEIAKEYNLAWDSSKTEAEFRKNHEDLLG GTKQVGVGAAPSRTPSKKGSDYSSPSTMEHSIKSNHDKQEHKHLEAPIPSNNNSWLNTNEIEESHKNNGVPVRDAKSETK LPSSDVLEKARAAIASADRATAAARAAAALVHSNFGSLKRDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 279 | 279 | 4.0E-136 | – | |
| Pfam | 1 | 140 | 140 | 7.2E-55 | ||
| PANTHER | 1 | 279 | 279 | 4.0E-136 | ||
| Gene3D | 1 | 152 | 152 | 6.2E-61 | ||
| MobiDBLite | 157 | 245 | 89 | - | – | |
| MobiDBLite | 176 | 190 | 15 | - | – | |
| MobiDBLite | 191 | 205 | 15 | - | – | |
| MobiDBLite | 206 | 225 | 20 | - | – | |
| MobiDBLite | 226 | 245 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi5g1v0339600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…