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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0341400 |
| Transcript ID | LotjaGi5g1v0341400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT1G68640.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|V7BDA6|V7BDA6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0341400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65871915..65876166) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAACGATGCAAAGCTTCCAGACAACAACTGAATCAAGCTCACCACTCTATACTCATTCTTCCTTCTTCCTTCGGTA AATATGGATTCATATGCTGCAGCAGCAAAATGTGTTTTTTGTTTTCATTCAGCATTAAACAGAGTTTCTCTGTTTTGAAA CAGGGGAGATGATGACACCACCCAAAATCCAACGCTGTTCTGGGATATTCAACGTTCATTTCAGCAACAAGATGCTGTTG ATTTAAGCTCAAGTTGCTCTTTCTCTCCAGGCTCTGCGTTTGGTGCAAAGTCGAGTGATGTTGCTGTTCTTGCAAGTAAC TTGCAGTGTGCGACATTCAACACTGTATTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGTAGATTACGAGT TCCTTATCTGTTTGTGTAGAACATTGGTGGAGGGTGTGCTTCAACAGGGGAAGTGTGCATTGAAACAGGGCAAGAGCCAA TGTTTCAGAGAGGAACCATTTTTAACGCCGTGCCGCTGGGGAACGAGAATTGGGGTGATTCAGGCATGGCTGATAACAGT CAACAAACTGAAGATACCTCCACTGATGTTGATACTGATGATAAAAACCAAGTGGGTCTCTCCATTTCTCCAACAAGCTC TGTTTACTTTTTTCCCACATTTCCTAAGCAACTAAGCTTCATCAAATTGCATGTTATTGGCTTTCCTAAGGGCATATTTG GAAAAAAAATTACAATTGATTCTGAAGCCAAAATCAGTTCCGTGGAGAAGCTTCTGAGAGTAGCTTCTAGGTGTCATTCT GAGGAAATAGTAGCTTGATCAATGGATTAGGATTCTCTTAAGTGAAATTTATGTTATGTTCCCTTATGTTGAAAATTTGT GTTTATCTCTCTCTTCATATATTAAATATTAGGATTCTCTTAAGTGAAATTTATGTTATGTTCCCTTATGTTGAAAATTT GTGTTTATCTCTCTCTTCATATATTAAATATTAAATAGGTATAGTAGTAACATGAGAAATTTCACATGAGTTCATATACG TGGCATAAATTTTTTTCCCAATCAATATTTTAGAAACACTTGCATTTCCTCAGATGTGTATGAAAATTTTACTATATTAT TTTGGGTAATAAGTAGTGTTATGTGAATACTGAATAGCAAAAGTGCATGCTTATATTTTTTGCTATGAATGTCCTCTGAC AGTGTTTCTCTAACGTGTCTTGGTACAATGGAGTTCAGCAAGAGCCACTTGTTGTAGTTATGGACTCCAAGGATCAAAGT AAGGCTAAGGTTAAAGATGAAGACCAGAAGGTTTGCTACTACCTTTTACTTCAACAGTTTGTGGCTTACCAATTCAATTT ATATTGAATTGCTCATACTTTATGTATGTGGATGCATTTTTCTAGACTCTTCGTAGACTGGTCCAGAATAGGGAGGCTGC AAGGAAGAGTCGATTAAGGAAAAAGGTAGTTGATCCAAGTGTGGTGTACTGGTGTATCTAATATTCAATTGTTTCTGCCC TTGTGTTTCTACTACTTGTGCTTTTGGGTGAATAGTTCAATAAGCAATCATATGCATGGCAATAAGCTTAATCTCGGAAG TTAATTTGAGAAATGCTTATTTATTAGCTAATTTGGCTAGCTCACTAAAGTAAGCTCAAAGTATGTTATAGGTAAGTTTA AACACTTATATATAAGTTAATCTGAGTAGCTTATGCAAGTAAGCTCAAAACAAAATAAGTTATTTACATATGCTCCCCTT AATAGTTGCATAAGCGTTTGTCTGACAAGATAAGCCAAATTAGCTCTTCCAAATGGGACCTATTCAATTTATCCATTTTC TTGTGGATGGTGCTTATTTAGTTGTGCTGATATGTTTTGGTTTTAAATAGGCATATGTGCAGCAATTGGAGAACAGTAGA GTTAGGCTTGCTCAAATGGAGCAAGAGCTCCAAAGAGTACGTCAGCAGGTGCTTAAAGTTAGAGATTTTTGTTAATTTTT TCTTCTGTTTGATTTTGTTATCTTACTTGTGTTCTTCATGGGTTGCTGTTTCTCTAGGATGTGTCAGGAATTACAGGGGA TCATGCTCACTCAGTTGTTGCAAATGGTAAGTAAGAAGGATTCACTTGTGCATTTTAAGTTATGAAGGATCTTCTTGATG CTTTGAGGTACTGAAGAAAATTGTTAGCTTGTGCGTTTTCTACTAGTCTTGAGTGATCAATGGGAACTCTTCTCTGGTCA ATAGTAGAAAAGTAAATGAGTAGACTGTTGGGAATTGATGTATGAGATTAGATAAAGATAATACAAGAGAATCGACTCAT AATCAATGCTTTAAGGTTTTAGGATTAAGATATGGTGTAAGGTTATCTTAGTGGTTTGTACTTTCACCCATTGGTAGCAG GCCCCTTGCTTTCTAGCTTCCCATGTCTTCCCAACCAATGGTATGAGATATGTTTGTGAAGTCTTTGTGCTGTGGAGTAT TTGGCTCTTTCTAATGGGCTTTATGTCCAAGCCATGTTTGTGGAGCATTGTGATGGGCCTTTGGTCATGTCCTATGTTTG TGGAGCACGCTTTCGCTCTTAGTGAAAACCCTGTTGAGCCGTTTGTACTCGAAAAGGTTGTAGACTTGAGAGTGAGCATA GTAATGTGGTGGTGACTCACTTGAGTGAGAGACGGTTGGGAACTCAAATGTGAGTTTTTATTCCCTCATTGGTTAGTGAT GTGATGAGCTATATAAAGATATATAATAAAACAATGACAAAAGTGATAAGGAAAACATATTGCTTCTATTCTTTTGACCT CAAATTTCATGCTGAATTTTATAAGCTTAGTGTGTTGAGATTTGAATATTTGTGATATATGAGGGAATGTGAGTATGTGA TTGCCAATTTGTGACGACTTTTTTAAACCTTCAGGTGTTTTAGCATTCGACATGGACTATGCTCGGTGGGTTGATGAGCA TCAACATCTGATTAATGGCATAAGATCAGCCATAAACTCTCAAATGGTTGATAAGGAGCTGCATCTTCTGGTTGATGGAG TCATGGCACATTATGATGAATTATGTAGGTTGAAGAGTATAGGTGCTAAGGCTGATATATTTCACATGCTTTCTGGGATG TGGAAGACACCTGTAGAAAGATGCTTCATGTGGCTTGGTGGATACCGTTCATCTGAACTTCTCAAGGTGATCTACCCATC TCAGCATCTGCTTTTTCTGCTCTTGAACCCTAAACCCTAAAGTATATATTAACTCATGTCAATATATTTTGTTTTGAGAT TCAGATCGTTAGGAACCATCTTGAGCAGTTAACCGATCAGCAGCTGATAGGCATTTACAATCTGCAACAGTCTTCTCAGC AAGCCGAGGATGCTTTATCTCAAGGGATGGAAGCATTGCAACAATCTCTTTCAGAAACACTTTCCTCCACATCCCTAGGG CCTACTTGTTCTGGAAATGTTGCTGAGTACATGGGGCAAATGGCTATTGCAATGGCCAAGCTTGCCTCACTAGAGAGTTT CCTTCATCAGGTAAGAGATGCAATCTTGGTAACTAAATCTATAGCATGTTTGGATCAACTTATTTTTTCTCAGAATCAAT TGACAATCAGAAACTACTCATGAAAGCTTCTCCCTAGAATTGATTATGGTTTTAAAATCAATTGTAGAAGGACTTCCAAA CATGCATATAATGGACTAGTATTATTTCCTAATTGATTGCAATATTGTGAACCTTGGGGTGAAAAAGGGAAGAAGAAAGC ATAGGCTTTGTGCTATCTGTGAGAACATAAATCATTGTTAATCTTCATTTTTTGCCTCCTCTTCCTATTACTAAAATTTT CACTACTACCACTAAACACTCCAAATTTTTATATGCACTGTATTCTGAATGTCCACCGTCTTTCTTAGGCTGACCTGTTG AGGCAACAAACCATGCATCAGTTGCAGCGAATTTTGACGACGAACCAAGCTGCTCGGGCTCTCGTTGTCATAAATGATTT CATTTCACGACTTCGGGCACTTAATTCATTATGGTCAGCTTGCCCTAAAGAGTACTAGGCATTGACATATTATATGTATC TATGGTACATCACTAACGTGTAGGAACTTTGATGGGTTGTTGCCAGTTTCAAAGCATGAACATGGTTCATAGTCGGCCAC ACTTTGTAGAAGCCTTGATTTCCTTACCTGCTGATCTAATATTATCTAGAAGATTGGTAATTACGTGCATCTTGCATCTT GATGTATACAAG
CDS sequence (LotjaGi5g1v0341400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCAGAGAGGAACCATTTTTAACGCCGTGCCGCTGGGGAACGAGAATTGGGGTGATTCAGGCATGGCTGATAACAG TCAACAAACTGAAGATACCTCCACTGATGTTGATACTGATGATAAAAACCAATGTTTCTCTAACGTGTCTTGGTACAATG GAGTTCAGCAAGAGCCACTTGTTGTAGTTATGGACTCCAAGGATCAAAGTAAGGCTAAGGTTAAAGATGAAGACCAGAAG ACTCTTCGTAGACTGGTCCAGAATAGGGAGGCTGCAAGGAAGAGTCGATTAAGGAAAAAGGCATATGTGCAGCAATTGGA GAACAGTAGAGTTAGGCTTGCTCAAATGGAGCAAGAGCTCCAAAGAGTACGTCAGCAGGATGTGTCAGGAATTACAGGGG ATCATGCTCACTCAGTTGTTGCAAATGGTGTTTTAGCATTCGACATGGACTATGCTCGGTGGGTTGATGAGCATCAACAT CTGATTAATGGCATAAGATCAGCCATAAACTCTCAAATGGTTGATAAGGAGCTGCATCTTCTGGTTGATGGAGTCATGGC ACATTATGATGAATTATGTAGGTTGAAGAGTATAGGTGCTAAGGCTGATATATTTCACATGCTTTCTGGGATGTGGAAGA CACCTGTAGAAAGATGCTTCATGTGGCTTGGTGGATACCGTTCATCTGAACTTCTCAAGATCGTTAGGAACCATCTTGAG CAGTTAACCGATCAGCAGCTGATAGGCATTTACAATCTGCAACAGTCTTCTCAGCAAGCCGAGGATGCTTTATCTCAAGG GATGGAAGCATTGCAACAATCTCTTTCAGAAACACTTTCCTCCACATCCCTAGGGCCTACTTGTTCTGGAAATGTTGCTG AGTACATGGGGCAAATGGCTATTGCAATGGCCAAGCTTGCCTCACTAGAGAGTTTCCTTCATCAGGCTGACCTGTTGAGG CAACAAACCATGCATCAGTTGCAGCGAATTTTGACGACGAACCAAGCTGCTCGGGCTCTCGTTGTCATAAATGATTTCAT TTCACGACTTCGGGCACTTAATTCATTATGGTCAGCTTGCCCTAAAGAGTACTAG
Protein sequence (LotjaGi5g1v0341400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFQRGTIFNAVPLGNENWGDSGMADNSQQTEDTSTDVDTDDKNQCFSNVSWYNGVQQEPLVVVMDSKDQSKAKVKDEDQK TLRRLVQNREAARKSRLRKKAYVQQLENSRVRLAQMEQELQRVRQQDVSGITGDHAHSVVANGVLAFDMDYARWVDEHQH LINGIRSAINSQMVDKELHLLVDGVMAHYDELCRLKSIGAKADIFHMLSGMWKTPVERCFMWLGGYRSSELLKIVRNHLE QLTDQQLIGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSTSLGPTCSGNVAEYMGQMAIAMAKLASLESFLHQADLLR QQTMHQLQRILTTNQAARALVVINDFISRLRALNSLWSACPKEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 13 | 41 | 29 | - | – | |
| PANTHER | 21 | 363 | 343 | 5.2E-185 | – | |
| PANTHER | 21 | 363 | 343 | 5.2E-185 | – | |
| SMART | 76 | 144 | 69 | 1.3E-5 | ||
| ProSiteProfiles | 78 | 122 | 45 | 9.301 | ||
| Pfam | 79 | 110 | 32 | 3.3E-7 | ||
| Gene3D | 80 | 129 | 50 | 1.6E-9 | – | |
| SUPERFAMILY | 80 | 124 | 45 | 2.17E-7 | – | |
| ProSitePatterns | 83 | 98 | 16 | - | ||
| Coils | 99 | 126 | 28 | - | – | |
| ProSiteProfiles | 144 | 360 | 217 | 30.162 | ||
| Pfam | 163 | 236 | 74 | 5.9E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0341400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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