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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0342000 |
| Transcript ID | LotjaGi5g1v0342000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A151TPX9|A0A151TPX9_CAJCA Putative transporter MCH1; Found in the gene: LotjaGi5g1v0342000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65914408..65916909) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAATTCAAAATTCAAATCAGAATGATTGTGCAATCAAGCATTTTCCCATAATCAAACTTAGCAACAATAATTTATAG ATAACATGTATACTTTCAAGAATTAAAAACAAAAAAACATTTACTATACTTTCTTAATTTGATAGCATTATCTTCTATAT ATATTGACTTCAACTTGCTCTGTTTCGTGCACCCTGCACACAGTAGTAAGTGTTGACTGTGGTTCCCTGTTCTGCTGCTA ACAACTTGCAAGTGCTGCTCTCACTATGGCGGTTGCAACCGGAGTTCATGGATGGAGAGACACAAAGAGTCTGTCCGTCC AATTCATCACCGGCCGGTGGTTCTTGGTGTTCGGCTCCTTCCTTATCATGGCGGCTGCCGGAGCCACCTACATGTTTGGC CTCTATTCCAGTGACATCAAAACAACACTCGGCTATGACCAATCCACTCTCAACCTCCTCAGTTTTTTCAAGGACTTAGG TAGCAACGTTGGCATCCTCTCCGGCCTAATCAACGAGCTCACGCCACCGTGGGTGGTGCTAACAATCGGTGCAGTACTCA ATTTTTTAGGGTACTTCATGATTTGGCTCTCAGTCACAAAGAAAATTGCAAGACCTCAAGTATGGCAAATGTGTCTCTAC ATCTGCATAGGTGCAAACTCTCAATCTTTTGCCAACACTGGTGCTTTGGTCACTTGTGTCAAGAACTTTCCACAAACTCG TGGGGTGGTGTTGGGAATTCTCAAAGGCTACGTGGGACTCAGTGGAGCAATCATCACACAACTCTACTTTGCCTTCTATT ACAATGATTCCAAGGGTTTGATTCTCTTCATAGGTTGGCTTCCTGCAGCAACTTCCCTCGTTTTCCTTCGAACCATTCGA TACATGAAGCCGGTGAAGCAGAGTAATGAGCTCAAGGTTTTCTTCAATTTCTTGTATATTTCCCTTGGCCTTGCTGGGTT TCTACTTGTCATGATTGTAATTCAGAAAAGGATGGATTTCACGAGGAGTGAATATGGTGTGAGTGCTGGTATGGTTATTT TCTTGATGTTTCTTCCACTTGCTGTGGTTTTCAATGAAGAATACAAAATCTGGCAGAGGAAGAAGCTTGCTTTGGAGGAT TCCACACCGGTGAAAATAGTAACCGAGGGTGAAAAATTCAGCCAGAGTGAAGCTAACACTACCAACTCTGTTTCAAACAA AACAGAGGACTCTGTTTCCAATAAAACAGGGGACTCTGTTTTCAGAACAGAGGACAGTGCTAAATGGTGGCAAAATGTGT TTACTCCACCAAAAAGAGGTGAGGACTATACAATTCTTCAAGCTCTCTTCAGCATTGACATGTTAATTCTATTTATAGCT TGCATTTGTGGTGTTGGTGGGACTTTGACTGCAATTGACAATCTGGGTCAAATTGGAACTGCTCTGAGGTGCCCCAAGAA AAGCATAAGCACTTTTGTGTCACTAGTGAGCATTTGGAATTATGCAGGGCGGGTTTTCTCTGGATTTGTTTCTGAACATG TTCTAACAAAGTACAAATTCCCCCGTCCTCTTATGCTTACTTTAATCCTGTTTTTATCATGTGTGGGTCACATTCTGATA GCTTTTGATGTGCCAAATGGACTCTATGTGGCTTCAGTGATCATTGGGTTCTGTTTTGGGGCACAGTGGCCTTTACTTTT TGCCATCATATCTGAACTTTTTGGACTCAAATACTATGCAACTTTGTACAATTTTGGAAGTGCAGCAAGTCCACTCGGGT TGTATGTGCTTAATGTGAAGATCACAGGTCATTTATATGACAAAGAAGCTAAGAAGCAATTAGCAGCATTGGGGCTACAG AGAAAAGAAGGGCATGAATTGAATTGTGTTGGTGTTGATTGCTTTAAATTGTCCTTCATAATTATCACTGCTGCAACTTT CTTTGGTGCACTTGTTTCACTGATTTTGGTGGCTAGGACTAGAAAGTTTTACAAAGGTGACATATACAAGAGGTACAGTG AGGAGGCCACGGTGGTGGAAGCTGAAATGGTGACAGGGAAAGAAGCCAAAGAGGTGACAACTTAGAATTAGGACAAATGG ATAAGGATGATCTAGGTCAAAATTTGAAGTATACACAAGAAATTAATAATGTGGTTATTAACTTATCATACATATTATAA TATGTGATGTAACGTTATGTGTGCTACATTTTCTTTGGGTGTGTGTTTACTTGTTTGTCATGTTGTCTCACATGCAAAGC GACTTGCCCCTTTTTTCGGATTTTTGTTCAGGTTCGAGAAAAGAAAGTTCTTATTGTAATGGATGGATCTAGTTTAATGC TTTAATGCAAGTTTATTCCTTTTGTTTAAATGCAAGTGGTTGGTTAACGGTTTCGTGAAACTGACACACGATGCTGCAGT TTCATTTTCACCAATGAATATAATATCTTTTTAATTTAATGGCCAAGATTAATTAACATTAAAAGAATTTATTTGTTAAA TATATATTAATTTACTAAAACA
CDS sequence (LotjaGi5g1v0342000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTGCAACCGGAGTTCATGGATGGAGAGACACAAAGAGTCTGTCCGTCCAATTCATCACCGGCCGGTGGTTCTT GGTGTTCGGCTCCTTCCTTATCATGGCGGCTGCCGGAGCCACCTACATGTTTGGCCTCTATTCCAGTGACATCAAAACAA CACTCGGCTATGACCAATCCACTCTCAACCTCCTCAGTTTTTTCAAGGACTTAGGTAGCAACGTTGGCATCCTCTCCGGC CTAATCAACGAGCTCACGCCACCGTGGGTGGTGCTAACAATCGGTGCAGTACTCAATTTTTTAGGGTACTTCATGATTTG GCTCTCAGTCACAAAGAAAATTGCAAGACCTCAAGTATGGCAAATGTGTCTCTACATCTGCATAGGTGCAAACTCTCAAT CTTTTGCCAACACTGGTGCTTTGGTCACTTGTGTCAAGAACTTTCCACAAACTCGTGGGGTGGTGTTGGGAATTCTCAAA GGCTACGTGGGACTCAGTGGAGCAATCATCACACAACTCTACTTTGCCTTCTATTACAATGATTCCAAGGGTTTGATTCT CTTCATAGGTTGGCTTCCTGCAGCAACTTCCCTCGTTTTCCTTCGAACCATTCGATACATGAAGCCGGTGAAGCAGAGTA ATGAGCTCAAGGTTTTCTTCAATTTCTTGTATATTTCCCTTGGCCTTGCTGGGTTTCTACTTGTCATGATTGTAATTCAG AAAAGGATGGATTTCACGAGGAGTGAATATGGTGTGAGTGCTGGTATGGTTATTTTCTTGATGTTTCTTCCACTTGCTGT GGTTTTCAATGAAGAATACAAAATCTGGCAGAGGAAGAAGCTTGCTTTGGAGGATTCCACACCGGTGAAAATAGTAACCG AGGGTGAAAAATTCAGCCAGAGTGAAGCTAACACTACCAACTCTGTTTCAAACAAAACAGAGGACTCTGTTTCCAATAAA ACAGGGGACTCTGTTTTCAGAACAGAGGACAGTGCTAAATGGTGGCAAAATGTGTTTACTCCACCAAAAAGAGGTGAGGA CTATACAATTCTTCAAGCTCTCTTCAGCATTGACATGTTAATTCTATTTATAGCTTGCATTTGTGGTGTTGGTGGGACTT TGACTGCAATTGACAATCTGGGTCAAATTGGAACTGCTCTGAGGTGCCCCAAGAAAAGCATAAGCACTTTTGTGTCACTA GTGAGCATTTGGAATTATGCAGGGCGGGTTTTCTCTGGATTTGTTTCTGAACATGTTCTAACAAAGTACAAATTCCCCCG TCCTCTTATGCTTACTTTAATCCTGTTTTTATCATGTGTGGGTCACATTCTGATAGCTTTTGATGTGCCAAATGGACTCT ATGTGGCTTCAGTGATCATTGGGTTCTGTTTTGGGGCACAGTGGCCTTTACTTTTTGCCATCATATCTGAACTTTTTGGA CTCAAATACTATGCAACTTTGTACAATTTTGGAAGTGCAGCAAGTCCACTCGGGTTGTATGTGCTTAATGTGAAGATCAC AGGTCATTTATATGACAAAGAAGCTAAGAAGCAATTAGCAGCATTGGGGCTACAGAGAAAAGAAGGGCATGAATTGAATT GTGTTGGTGTTGATTGCTTTAAATTGTCCTTCATAATTATCACTGCTGCAACTTTCTTTGGTGCACTTGTTTCACTGATT TTGGTGGCTAGGACTAGAAAGTTTTACAAAGGTGACATATACAAGAGGTACAGTGAGGAGGCCACGGTGGTGGAAGCTGA AATGGTGACAGGGAAAGAAGCCAAAGAGGTGACAACTTAG
Protein sequence (LotjaGi5g1v0342000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVATGVHGWRDTKSLSVQFITGRWFLVFGSFLIMAAAGATYMFGLYSSDIKTTLGYDQSTLNLLSFFKDLGSNVGILSG LINELTPPWVVLTIGAVLNFLGYFMIWLSVTKKIARPQVWQMCLYICIGANSQSFANTGALVTCVKNFPQTRGVVLGILK GYVGLSGAIITQLYFAFYYNDSKGLILFIGWLPAATSLVFLRTIRYMKPVKQSNELKVFFNFLYISLGLAGFLLVMIVIQ KRMDFTRSEYGVSAGMVIFLMFLPLAVVFNEEYKIWQRKKLALEDSTPVKIVTEGEKFSQSEANTTNSVSNKTEDSVSNK TGDSVFRTEDSAKWWQNVFTPPKRGEDYTILQALFSIDMLILFIACICGVGGTLTAIDNLGQIGTALRCPKKSISTFVSL VSIWNYAGRVFSGFVSEHVLTKYKFPRPLMLTLILFLSCVGHILIAFDVPNGLYVASVIIGFCFGAQWPLLFAIISELFG LKYYATLYNFGSAASPLGLYVLNVKITGHLYDKEAKKQLAALGLQRKEGHELNCVGVDCFKLSFIIITAATFFGALVSLI LVARTRKFYKGDIYKRYSEEATVVEAEMVTGKEAKEVTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 10 | 586 | 577 | 0.0 | – | |
| PANTHER | 10 | 586 | 577 | 0.0 | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| CDD | 23 | 555 | 533 | 5.66555E-110 | – | |
| Pfam | 24 | 269 | 246 | 2.3E-91 | ||
| SUPERFAMILY | 24 | 571 | 548 | 3.66E-23 | ||
| Phobius | 25 | 47 | 23 | - | – | |
| Phobius | 48 | 88 | 41 | - | – | |
| Phobius | 89 | 110 | 22 | - | – | |
| TMHMM | 89 | 111 | 23 | - | – | |
| Phobius | 111 | 153 | 43 | - | – | |
| TMHMM | 153 | 175 | 23 | - | – | |
| Phobius | 154 | 179 | 26 | - | – | |
| Phobius | 180 | 184 | 5 | - | – | |
| TMHMM | 185 | 206 | 22 | - | – | |
| Phobius | 185 | 204 | 20 | - | – | |
| Phobius | 205 | 215 | 11 | - | – | |
| Phobius | 216 | 239 | 24 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 240 | 250 | 11 | - | – | |
| TMHMM | 250 | 269 | 20 | - | – | |
| Phobius | 251 | 270 | 20 | - | – | |
| Phobius | 271 | 352 | 82 | - | – | |
| MobiDBLite | 302 | 323 | 22 | - | – | |
| Gene3D | 349 | 569 | 221 | 4.2E-10 | – | |
| TMHMM | 353 | 375 | 23 | - | – | |
| Phobius | 353 | 377 | 25 | - | – | |
| Phobius | 378 | 396 | 19 | - | – | |
| Phobius | 397 | 416 | 20 | - | – | |
| Phobius | 417 | 427 | 11 | - | – | |
| Phobius | 428 | 447 | 20 | - | – | |
| TMHMM | 429 | 446 | 18 | - | – | |
| Phobius | 448 | 452 | 5 | - | – | |
| TMHMM | 453 | 475 | 23 | - | – | |
| Phobius | 453 | 475 | 23 | - | – | |
| Phobius | 476 | 486 | 11 | - | – | |
| Phobius | 487 | 506 | 20 | - | – | |
| Phobius | 507 | 541 | 35 | - | – | |
| Phobius | 542 | 563 | 22 | - | – | |
| TMHMM | 542 | 564 | 23 | - | – | |
| Phobius | 564 | 599 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0342000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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