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LotjaGi5g1v0344200.1

Overview

Field Value
Gene ID LotjaGi5g1v0344200
Transcript ID LotjaGi5g1v0344200.1
Lotus japonicus genome version Gifu v1.2
Description Ribonuclease HII; TAIR: AT2G25100.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q9SEZ6|RNH2A_ARATH Ribonuclease H2 subunit A; TrEMBL-Plants: tr|A0A072W210|A0A072W210_MEDTR Ribonuclease; Found in the gene: LotjaGi5g1v0344200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:66119326..66124740) extracted from Lotus japonicus Gifu genome v1.2.

GTAATGTGAAGTTTAATTTTGAGAAAGAAAGTTGCCCTAATTGCATCACGCTCGCTCTAACCAAGCAGGTTTAATGGCGG GAATTTGAAAAGCTCTTCTCAATTGAGAAGAAGAAACCGCGCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTC CCTCTTCCATTGAGCACTGAGTAGTAGTAGCTGAACACAATCGGAGAATGGGATCTGAAGCTCTTGTTCCGAAATGGGCA TCGAAGCCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTCTAGGTTTTCACTTCACCACCACTCTTCCTTC TTCTTCCGCATTCTCAATGCCACTTTTCACATGGTTCTTCGTTTCTTTGTTTCAGGTCCCATGGTCTATGGTTGCTTGTA CTGTGCTCGCTCCTACCAGAACACCCTTTCCACTTTGAGTTTTGCAGGTACAACACCCATTAATCTACATTCATTCTCAA ATTGTGAATCTGGAAGCTCCAAATTACCTTCTCTCATATGAATTTTACTTGGAGAATGGTGTTTGAATTGAACAGTTGCT TGAAAGTTGAAACAATGCATAGATTAATTAGGGTTCATCCATAGAATCACACACACTCACACACACATTTTAGAAGGTGC AGATTGTTTGTGGGGTTTTTAAACTTACGGTGTCGAATTTGCGACTTTGTTGGTGTAGATTCTAAGACATTGAAAGAAGA GAAGAGGGAAGAATTATTTGAATCTTTAAAAGCCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCCAAGGAGC TCTCTGCTAAGATGCTCAAGAAGTAAATCAACAAAGCTTAGTGTTTTCTTTTCAGTTTTTCTTTCTATGTTGGGTTTTTT TCTATTTGCTAAGGGATTTCCTTGTTATAATTTTGACAGGAATAAGATAAACTTGAATGAGATATCACATGACTCTGCCA TGGGCCTCGTCGATAGGGTGCTAAAAATGGGGGTGCTTCTAACTGAGGTAACACTGTCAAATTTATGTTTAATATTAACT TTAAGCTAATTTATCTATAGCTCAATGGGCATACAGTGCTTAATTTCTTCCCTTGGGAGCATTTAGTGAAATTAAGTACT GAAAGAGAGTGTTTAAGCCTTGTGGTTATTATTTAGTACTTAGTGTTGGAAGCGATATTTAGCAGATAATAATACCATTA CAAAGGTGGGAAATATTTGATCTGTGCTTTTCAGGTTTATATAGACACAGTTGGAGATCCAGGGAAATATGAAGTGAAGC TGTCCAAAAATTTCCCATCTATCAAATTCGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGC ATAGTTGCAAAGGTATTCTGTCTCTCTCTGATGGAATAAGTGCATGTTTAGAAATCTTTTTCTTAATTCTAAAATCAAAA TCGATTCCAGGGAGAAATTTCTGTGAGTAGCCTATGGTTGAATTGATTTTGAGGAAAAATTAGCTGATTCAAACATGCTA TAACAACAACATTTAACCCAACCTTTCAGGTCACGAGAGACCAAGCTATAAGACAATGGGTGCTTGAAGAGACTGCTGAA AACATGCACAGGAATTTTGGCTCTGGATATCCTGGAGGTGACAAGGCCACAAGTCCATCTCATGTGATGTCTATCATTCT GATTAACATTGTACTTACGACCAATCTGGTTTTTTGTTTTTATTTGTGTAGATCCCACGACCAAGTCTTGGCTAGAACAT CACAAAAATTCTGTCTTTGGATTTCCAACATTGGTCCGGTTTAGTTGGGGGACCTGCACCACTTATTTTAAAGATGGTGC TGAAGTCTTATGGTATGTCTGTTTTCTTAAGCTTCATGGAAATCTGTGACTATGCAGCACTCGCTTCCTAAGTTTATTCC ATTTTATGTGCTTACATATTCTTCTCGTCTTTGCTTTTCTGCACTTTCCATTTGCCTACTCGAACAACGCCTGGTTAACT ACAATGGATAATTCTGTAATAATGCTGACGCACTGGCAGGTTCTATTCATAATCACCACACACAGCCTTAGTCTGATGTT AAGTTCAACTTAACACTAAAATTAGTTTCGACTTTCGACTATCATTTTCTTTTATTTTTCTTCTTAACTTCCGTAGAAGC CTATTTTTGTGTTTTGAGGTTCATTTCATTCCAGAATAACTATCTCAAATCTTAAGCTAACCTCACATCTGTAATTTTTG GAATTTTCTCTTAGGTGGTCTTGGCACCACTACACACATCATTATGAAATTCAAAATTACTTGTGAGGTCTGCTAATTGT TTTCAGATTGATAAGTAGAATCTTTTTCTTTATTTTTGTAGTGTATTTTATTGTAACCATCCCTGATGTTAAAACACCAT TTTCTCCTGCATTAACGGTGCAAGAGGTCAGTTATACCTTGTGCTGTAAGTTGATTATGAAGAAAATGGGCAGGAAGAAT CTAATTCGTGACCACTTGGTAAACCATGTCAAAAACCAAACGCCCCCTTCCCAGACCTGTTCTCTTTTTGCTGTAAACGG ATTAAACTTTTTAAAAAAGCCGGTTTCTTTGCATCATATCTTTGATTAAGGATGAATTCAAATAATTTGCATGGCCATCC ATCCTTCATATGGGGCAGATCCCGGTTTTTGTATTTCATTTTTCTCTAATTTTATGTCCCAAGCTTTATACGAGAGATGT TTCTGTTTATCTCCATAACATTCATAATTCTTTACAGGGAGGCTGACAAAGATGAAGATGAAGGCGGCAATAATAATAGC CGCAAGCGACAACTGAAATTAAGCAATGTGGGTTTCACCACATCCAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGG ACGCTCTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTAAGTCATTTCTGACAACGCTGATGCTTACTTTATTCATCTC TCTTTGTCTTGCACAACTTTAGTAATTTCTAGCTCTGTGAAATTTTGAAATGTTTCATTTTCAGAGAACATCATGTATTT ATACCTTTCTGGGGTCTAACCAGATTTGTACTAGTGATGTGCCAGTTTAAGGATGTTACTCTCAAACCCTGTCAAACTAG AATTGTACTAATAATGTGCCAATTTAATTAGTATAGTTGATATTTGTAAGTTAAACATGTATTTCTATGTGTACGATTAA GGAGATTGATAAAATATTGTGAAAATGCCAAGTTGCAGAACTTTGTTTGATGTTAAATTCATTTATCGTGTTATTACCAA TTGAATTTGAAATTTTCAAACTTGCAATTGAAGTCTCAGTAAACTCGATTGGCTTTTTACGCGTTTAGTTAATTTGATAT TTTAAGTGTCAACATTCCTTGCAAACTGAATAAAACATCTTATTCATCATCATCACTAACTGATTACATTCTGCATGGTG TCACAAATTCAAATTGAACAAAATAGTACATCATTAGGTCCTTAGAAAACACTATCGTTGAAAAGAACCTGTAACAGTTG TTGCATAATATACAATAAACTGTTATTGTGCTTTCTATATTAGCAGAAAAACAGTATGAGAAAATAGACAAAAAGTCATC ATAAACATAGTAGAAATTTTGATTTTGTTAAGATTGCAGGCAGCACCGCGATGACTCTGATGTTGTTTTGCAGCCCCCGC TGCATATATAGGCATAACTGCTCCTCCCCCTCCATGTGACTGGCCACCATGACTGCCTCCATGAGCACCGCCTCCTTCTA ACTTGCGTCCATATATTCCCTCATCTTCTAACTGCCTCCTCTGCACAAATTCTGTTTCAACAGAAGTCTTACTAAAAAGG TGTATACTCATGAACATCTATTTCTTCAATATGTTGAAGAAAGAAGCTAACAACATTGATTCTGTAAATAAAAAGATTTG TGTTTCTTCTCCAATGAAAAATGCAGGAGCATATGGTGTGGTTAGTTAGCACAAACACTACAAACTTACACTTGTTAAAT ATCTTCATCTTATGTTACAGTATCAACTGCAAAGTGGACCATTTCACACTGGAATCTCACCTTTCTTAAATTGAACAATG ACTGCTGTAAGCAAATAGTATTATTAGATCCTTTCACCTTGCAATGTTAACTTATTTAAGTGTTATTATACCGTAAGATC TGAACTTGCTGTACAAAAGCACGTAAATTACTGAAGATGAGTAGATACTTAAGTGTGTATTTAGATTCCGGTTGAGTGTA ACGTAAACAGACATTTAATTCAATCCATAAATAGAGTTATATTCACTTTTTGTCTCGAAGTAAAGACTAATATTCGTTTG CACCAGTGCTAACTGATATCCAAAGTTTGAAAAAATAAAAGCTAGTGGTGAGACATATTTTGAAAGCGTACTCTTTCTTC TAAGTTCTAACACATGTACAGTAAAGTTTATGTCTTGTCATGCAAAGGAATCTCAGCCAAATAGCATCTGAAATTTTTAC TGGTGGGAGTCAAGGAACTTAGAAAAGGTATCAATGCAAAAATTCATGCTTTGCACCCTCCATTAAAAATCAAAGGTACT TTGCTGTTCCTATCGATACCTTAATTGGAATTTTATCAGGAAAGATCAAGACTAGAGAATCACAACAGTATCATGAAGAG AAGATGAGAAGATACTTATGGATCAGGAAAAAGGGCCTGTAAAGAAACTCTTGATAAAGAATAACAAAAAATGCTTCTAT GCTGGGAAAAAAACAGGTTAATCATCCTTCTTCAAAAGGGAGTTTTGAAAAATCAAATTGCTTTATGATAAACTTCCCTA AGTTACAAGAACTTAGTAGTGTTTCTGAACAATCAGCATGTACATGTAAAGACTATATATGGAAGGGAGTGGCAACATAA CATATGAGTCAGAGTTCAGGGCATCTTTAATTATTTTTATTTTACATAGAAGAAAAGAGAGCATAGGACTGTACCAGATG GCAAGGTCTTCTGATTAGGATGTGAAGATGCAGGTTCACTGAAATAGACAAAGATCATAAGAAAAGAAAATGCTAATACT CTGAAACCCATTTGCCTGTTCAGCTAGCAACCGATGCAGATGATGGATGACCTGAACCTCACTGATTCGACTATTATACG ATTCTTCTACCTGCAGCTTTTCACTGAATTGGATGTTCTTGCAGGTTAGAATGACTTAAGCAGAACATTTGAGAAAGGAA AGTTTGGCCTTATCTTTATCAAAAAGTTCCCTTATTTGTGAATGAAAAGTAGAGTGAGTGGTCCAAATATAAAAGGTTAA GTGCGGTGTTTTAATTTTATTATGTGTCACATGATTTTGTAATTATTATTGCTTATAGTGAATGATAGAACAACATCTGG CAGCTATATGATACCTCATTTATTTAGTATTTATGATCCCCCAAACTATTTCCAC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0344200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGATCTGAAGCTCTTGTTCCGAAATGGGCATCGAAGCCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGT TCTAGGTCCCATGGTCTATGGTTGCTTGTACTGTGCTCGCTCCTACCAGAACACCCTTTCCACTTTGAGTTTTGCAGATT CTAAGACATTGAAAGAAGAGAAGAGGGAAGAATTATTTGAATCTTTAAAAGCCAATGATTCTATTGGATGGGCTGTTGAT GTCATTGACCCCAAGGAGCTCTCTGCTAAGATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGACTCTGC CATGGGCCTCGTCGATAGGGTGCTAAAAATGGGGGTGCTTCTAACTGAGGTTTATATAGACACAGTTGGAGATCCAGGGA AATATGAAGTGAAGCTGTCCAAAAATTTCCCATCTATCAAATTCGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTT GTCAGTGGTGCAAGCATAGTTGCAAAGGTCACGAGAGACCAAGCTATAAGACAATGGGTGCTTGAAGAGACTGCTGAAAA CATGCACAGGAATTTTGGCTCTGGATATCCTGGAGATCCCACGACCAAGTCTTGGCTAGAACATCACAAAAATTCTGTCT TTGGATTTCCAACATTGGTCCGGTTTAGTTGGGGGACCTGCACCACTTATTTTAAAGATGGTGCTGAAGTCTTATGGGAG GCTGACAAAGATGAAGATGAAGGCGGCAATAATAATAGCCGCAAGCGACAACTGAAATTAAGCAATGTGGGTTTCACCAC ATCCAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGCTCTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTAA GTCATTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0344200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSEALVPKWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYQNTLSTLSFADSKTLKEEKREELFESLKANDSIGWAVD VIDPKELSAKMLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYEVKLSKNFPSIKFVVAKKADSLYPV VSGASIVAKVTRDQAIRQWVLEETAENMHRNFGSGYPGDPTTKSWLEHHKNSVFGFPTLVRFSWGTCTTYFKDGAEVLWE ADKDEDEGGNNNSRKRQLKLSNVGFTTSKRSEEIESSGKGRSRFFQARKLEHLSHF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.420.10
3 186 184 2.6E-75
IPR036397
PANTHER
PTHR10954:SF19
5 295 291 2.9E-153 –
PANTHER
PTHR10954
5 295 291 2.9E-153
IPR001352
SUPERFAMILY
SSF53098
15 232 218 6.53E-54
IPR012337
TIGRFAM
TIGR00729
16 229 214 1.5E-54
IPR004649
CDD
cd07181
17 236 220 1.26483E-142 –
Pfam
PF01351
17 227 211 8.4E-54
IPR024567
Gene3D
G3DSA:1.10.10.460
187 236 50 1.9E-21
IPR023160
MobiDBLite
mobidb-lite
243 262 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of
GO:0016070
Biological process RNA metabolic process The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0344200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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