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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345700 |
| Transcript ID | LotjaGi5g1v0345700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein, putative; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q9ZUL3|IDD5_ARATH Protein indeterminate-domain 5, chloroplastic; TrEMBL-Plants: tr|A0A1J7HJ99|A0A1J7HJ99_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66221237..66228256) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGTTTGTCTGAGAGTGAGTGAGAAGATACGAAATAAGAGATAGAGAGAGAGAGTGTGGCGTAGCTGTTTCATGCTGC TTTCACACTTCCTATGTCGTTATGTGACTCAGGATTGGGTCCACCGACCGTAGGCCTTACCCTCTCTCTATCACTCTCTC TCTCTCCCATGAAATTTTTTCATATTTGTAAAAAGAAAATTCATTGATTTATGACAAGAGAGAGGTGAGCAAAATCTGGA ATAAAGCTTTTGAAGAGGAAAAAAAGGCAGAGAATAATAAAGAGAAGAGCAAAAAAAAAATGCCTTGTGTATATGTGTTG GTGTATCTGCATGACACCGAATCACTAGTGAAGAAACTCTGTTGTGGTGATGTTATTATTTTCCCTTCCTCAAATTTCTT CTCATTTATAACAAGCCAACCTCAGCACAAGGAAAAAATTTATATCAAGTAGTGAGAATTCAATTCATCACACCATGGTG ATGGTGGGGTTGATTAATTCTATTTTTGCTCTTTTTCTTCATTCATCTTAGATAGTACTAGCTAGCTTGCTCTTTCTTCA TCTTTTGTTGTTGATTTACAAGAATTCTCTATTAATCTTGATAAGTTCTGTGAGATTAATTGGGGGTGTGAATTGAAGAG GACTACTCATGCATGTGGGTTTTCCAGAATTCTGATTGAAGAAGAAGTAGAAAGAAGGTTACTTAATTACTACTGTAAGA GATATGGCAGCATCGTCTTCCTCAGCATCACTCTTTGGATTCAGAGAAGAGGATAATCAGATGAACCAACAGCAGCAACA TTCCCTGGTGGCAGCAGCACCATCCTCTTCAGCAACTCCATCTGCACCACCACCCCAGAAGAAAAAAAGAAACCAACCTG GAACACCAAGCAAGTATCTCAATTTTATCAGAAAAAAAGATCTATCTCTTATATCAATGACAATTTTTTTTCTTTCATAG ATTTTCTCTATTTTCACTCCACAAAAACATTTTCTGGGCTACCATTTTTTCTTCATTTTATATAAACGGGTTCGGATCCT CTCCAGCAACAAGTCTCTCTGCAGCCTTTCTCCTGAACAATTTTAACCATTGATTCTCATAGCTAATTATGAAAATTAAC TTATATTTTTTATATGTCGCAGAGGCAGCAGAGAATCTGAATCCAGATATGAAACCCTAATTAATTTTTAAGAAGTTAAA ATGTATTGGAATTCAATTCAATGGGGGATGTTTAGGAAATCTTTGTCTTCAAGCTTTGTCAATTTGTTTTATTTATTTAT TATTGTTGCCTTGTGAATTTTGTAATAATTTGTTTTGTTTTGGCATTTTTCCATGGAAACAGATCCAGATGCAGAGGTGA TAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAA AACTTGCAACTCCACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGT TTATCTGTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTGGGCGACCTCACAGGGATCAAGAAGCATT ACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCT CATTCTAAGACTTGTGGCACCAGGGAATACAGATGTGACTGTGGCACTCTCTTCTCCAGGTAACTAATTCTTCTTCAATT AACACCACATCAAGTTACTCTTTTATTTCTCCAAACGGTTAAATGTTTTTTACTAACTAAGCTAGCGTTTTCATCATGCA ATTTTTGGTATGTCTAGCTATAGGCTAGGCTAATTCCAAGAATGGTAATAAGCAGCTGAAGGAAAGAAAAAGCTTTGTTT GGTTTTGGCTTGTTTGGGGTTTGGGTTAGGGCTTCATTAGATTCCTTACAGCGTGTTTGGATTGTCAGTTGACATATAAT CCAAAACAGTCGGAAGCTACAATTTCTACTACTTTGAAGTTATGATCAATTTTGAAGGGAAACTTATGTATGTCCGTATG TAGTTTCTGGGTTTTACAATTGATTTTGATAGCAGGAAAACTGTTCCAAATATTCTAAAACCTTGTTTGGCCGGATAAAC TTCTCTTTCATCATAGTCAATTATGAAACCCAAAAAACCACTCACAAAATTAGCTTCTCCATCAAATTTATTGTGGTTTC AAGAATCAACAAATATGCACTAATTATCAAAGCTTTTCCGTAAAGTTGACTCTGACTTCAGAATCAATTATTGAAACTTT TTCAAACATGCACTAGTAGTTTTTCCCATAAGTGATTATGAGAGTAGCAATCGATCACATGACCAAAAATGCTAATAGTG ATGAAAAGGCCTTAGATGCTTTTCTTTATGTGTTTGTGTTTGGTTTCATTCCAATTGATTGATTAAGATTCTGTCCTCTC TCTTCTCGTATGGTTTCCTTTGTCATCTTACGTGAAATAATAATATTGGATGGAAGAAACATCCCCCCACGTGAATCTAT CACTGGAAACTGCCTTGGTCGTAGGGGTTTCAGAAAAACAAACACACACGGAGGAACAGCAACCATCAAAAAGCATAATG GAAAAAACACTTCACCTTTTTCATTCATTTTACCTCGAAAACAGTGCTGTTTTTTTCTGATCTCGATCAATTCTTTGTGT TTTTTTTTCTCTTCCTGTTCACGTGTTGCTATGCCATGAAGAGAGGAGAGAGAGTGTGTTTGTGTGTGGTGTTCTGATAT GTTGTTGTTAGCAGCTTTGTTTTCTTCTGGGTTGGCTAGATGTGTACAGTACTGTGCTCTTGCAGGTGCACCTTTTCATG ATAACGTTAGGGCCTATTCATGGATTCAACTCCTCCCTCTCTCTTTCTATTTCTTGTCTACTATTTTTCTTTCTTTTCTT TCCAAAAATGATTTGAGATTCAGCATATTTATACAGAAAAATTACAGGTAGTCAAAATCATGCATAACAGAAAAAACTTT AGTTCCTTTGCTCTTAATTTTATGCTCTTAATTTTATTTATCATGATTTTGATTTCATAGTGAATTTTTACCGTTTACCC AATCAGACACTTAATTTAAAGGAATCATGCTGAATGAATAACATGTTTAGATAAGTTTTTCTCTTATTAAAAACAATTAT GACACTCATAAGCTAATTCTTGTAAGCTTTTTCTCAAAACTAATTTTAATTTGTTAATTATGTAATGAACATATATGAAG TGCCTAATGAATGTTCATGATTGAATATAAAGTATGCACATTTTGGTTGAGAATTTTGATTTGCCTATATAAGAGTCAAC CTCAGCCTAGTTTTAGCACAAGTAGTCACACGATCCTTTTCAACGTTGAATACATTCTTTGGGTTCCATTTATTGAACAC CCAGTCTATACATTTGCCCTTCTTCCTTCATTGATTGGTTTTTTTTTTGTAGTTAATTCTGGTGAAATATTCCACCCTGC AAGCGTTTATGTTACTTATGTCTTTATAGGAATTTTTAGTAAACTTCTTAATCACTTGCAGAGTCATTCACATTATTATT TTATCTGGCTACTAGTTTCAAAAATATACGCAAGTATTTGTCCTCAGGTTAATTAAGATTTTCACTCTTTTATCTGGATG TGTATATTTTTTTACGTGATTAATTAGCTTTTTTTTGTCTTTTACTTGGAAAAGCCAAGTTCTCCTCCTAGTAATCTATG TATACTTCAGTACATGTGATTACAGTTTTACACATCACTTATAATTTCATGTAATGCCGCTTTTCATGTATCAGTAAAAC ATTTTATTTTTCCTACCAGTCGGTCTCTGCTGACAATGACACTATAGATTAATTTCATAATTATCAGTTGTAAGCATATA GTTACGAAAATAATCAAGATTTGTAATATCATAAAAATAATAATTAGGGTTTGATTAAATTTGGAATTGTAATTACTGCA GGAGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCATTGGCACAAGAGAGTGCAAGACAACCTCCAAACCTGAGC AGTGCCATTGGCAGCCATCTATATGGGAGCAGCAGCAACAATATGGGGTTAGCCTTATCCCATGTGGGACCTCAATTGTC CAACATGCAACCATCAGACCTAAACAACAACAACCAGTCAGCTGAGCTCTTGCGGCTCGGTGGCGCGGCCGGTCGGACCG GAGTGCAATTTGACCAAATGTTCCAAACAAGCCTTGGCCCAGCCTCCTTCAGACCTACACAGCAAAGCGTGGCCTCCTTC TTCTTGCCTCATGAGTCGAACCAGAACTACCACCATGATCAGCAGCAACAACAACAAGGGTTGGTGCAGCAAAACAAGTC GTTTCAAGGGCTAATTCAATTGTCTGAACTCAACAACCACCACCATCACAATCACAACAACAATTCTCCATCAGGTTAGT CATCACAGACCTAGGTTGATGATGAAAAATGGGGCAATTAAGAAAAAAATATCTTCATAATATAATAAAATTTACCTTCT TAAAAAATCATACTTTAATTATCTGATTTGTTTTCTCAATTTTAAAAACAATTTTTAGAAAAAAAATTAGAATGCTGTTT TTCAAAACTAAAATCATGCCCTAACTCTTTCAATTAATCTCACCTACCATTTCAGGTGGTGCCAACAACAACAGCCTCTT CAACCTTCCATTCCTTTCAAGCAACAACAGCACCAACAGCAGCAACACCTCCTTCTCGGACCACTTCAATGAAAATGGTA GTGTCAACGACCAAGCCACCAATTTCTTCACCGGCAACGTGATGGGTGGCGGTGGCGGCGGCGGTAGTCATCAGCAGCAC CACCAAACAACAGCAACAACCTCCGCTGCTCCTTCTCTGTTCAGCACATCCCTCCAAGCCAACAACAGTGCAATGGCTCA CATGTCTGCAACTGCACTCCTTCAGAAAGCTGCTCAATTGGGTACAACTTCAAGCAACAGCACCGCTTCTCTGTTGAAAA GCTTTGGAAGCTCTTCCTCTAGCAGTGCACCCAAACCAATGGCTGGTGCTGCTGCAAACTATGGCGGCGTCGGCGTCGGT ATGTTCAACGAGCAGAACAACCTGCAGGACTTGATGAACTCGTTTGCTGCGGCAAGTGGCAGCGGCGGCCATAACAATGT TTCCTCCATGTTTGAAACTGGGGGGTTTGAGGCTTATGATCGTGCAGGTGGTGTGAGTAGGGATCAGCAGAAGATGCAGG CGGCGATGAGCATTGGAGGGTCTGATAGGCTGAGTACTCGTGATTTTCTTGGTGTTGGTCAGATTGTGAGAAGCATGAGT GGTGGTGGACAAAGAGAACAGCAACATGCTTTTAATGCTTTGGAGGCAGAGAGAAATGCTGCTGCTGCTACAGCTGCGCC GTCAGGGCAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGACAAAGCAAATCATCAGAAAGTAATTGAGAACAAAGGT ACGTTTATTACTATGTTCTAGTTTCTACACACACATTCACATGTAACTTTTTGTTTTCATCTATTACGTGCATGTTTGAA TACACAATGCAAAATTATAGTGGAGCTAAAATTACGGTGGACAATCACAAAAATTAACTGAGGTTACTTTTGTTGTCCAC TATAATTTTAGCTACAATATAATTTTCTTGTGTGTTGTCAATTATAATTCTAAATTCAGATATTTAAGTAATTTAACAAT TTGATTAAGGTTGAATAATTCATATATTTCATTAAGATGAAACTATTCTAAAACTCAAATTTCTTATGCTCGTAAATTTA GTATTTTCTTAAGTACATTGAATTATATGATATATCATGTTTAATTTGTCTTTGTAGTGCTATTTTTCTTATCCACCTTG ATATATTTATATTCAACTTTTCTTAAAATTTATTTTTACTATTTTTTTATACTTTTCTTTTATTTCTATTCCATCACTTA TCATATTTATCATTTTTCATCTACTCTCCCTATGTCTCTGTAAAAATGTACCTAGAAGGAGTGTCAACACAATATTTTTC TTTCCTTATTCAACTAGTCAACATGAGTTCAATGACCTTATTATAAAATGATTATTGTTGTGATCAAGGAATGATTTTCC TTGATGGGTGTGTTTCTAGGGAGGGGTTAGTAGTAGTAGTACTGTTTAATTATTCAATGATGAGGTTTGAGGACTCGATA GATTCTTCCTTTTTTTTTTTCATTTCCAATTTCTTGAAAAAGGGAGTGTGTGCTCTGACAAGCTGTCTTGCATGGGGAGG ACAGTGACGTTCTGCACCATTTTGTTTCTTCTATTGTCTTCTCCTTTTCATTTTCTTTCATTTTTGGATATATTTTGAGT TGGCAGAGTCACGAGTGCGATTTACTGGTGGGCTGCGTTGCCGAATAAATATCCTTCTGCTCTTATCGACATCTCATTGC CACATCATATATATTCTATAAATAATATATAAAAATACTAGTAACAATGTTAAAATCATTTTTACCATTTTTTATAGATA ATTTGACCCTTTTTTATAATATTTTCTAATGCTTTTTTTTTTCTTTGACTTTTTGCAGGGATTTCAGCTTGTTCCATTGA CTGTCAAGCTCATCTAGTAAAGGCTTTTGAGATCAGCATTTGGGAAGCATGGGAATATCTGGACTTTATTATTAATAGAA CAACAAAAAATTAGACTTCAACATTAGGCTTCTTCTTCAACTCCGTTACATTGGGATAAAAAAAAATCGTTAATATTTCT GCTCCTCCCCCCGCTACAACTTTATTTGGATTATGAACAAAGTAGCTTCAAGTTTTTCATGTTTAATTTAATAGATTTTG TTATTGGACAAATGCATTAGTTATTGCATCCGTTATGACTGAACAATTTTTTTGCTTTACATGCATAAATAATGTGTATG GATATACTCTAGATTTTGATGAGTTCGTGATAAAATATTATGCTAGCTTTAGGGGGCTTC
CDS sequence (LotjaGi5g1v0345700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCATCGTCTTCCTCAGCATCACTCTTTGGATTCAGAGAAGAGGATAATCAGATGAACCAACAGCAGCAACATTC CCTGGTGGCAGCAGCACCATCCTCTTCAGCAACTCCATCTGCACCACCACCCCAGAAGAAAAAAAGAAACCAACCTGGAA CACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTGTGC AACAAAGGGTTCCAAAGGGAGCAAAACTTGCAACTCCACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGAC AAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTGGGCG ACCTCACAGGGATCAAGAAGCATTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATAT GCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGCACCAGGGAATACAGATGTGACTGTGGCACTCTCTTCTC CAGGAGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCATTGGCACAAGAGAGTGCAAGACAACCTCCAAACCTGA GCAGTGCCATTGGCAGCCATCTATATGGGAGCAGCAGCAACAATATGGGGTTAGCCTTATCCCATGTGGGACCTCAATTG TCCAACATGCAACCATCAGACCTAAACAACAACAACCAGTCAGCTGAGCTCTTGCGGCTCGGTGGCGCGGCCGGTCGGAC CGGAGTGCAATTTGACCAAATGTTCCAAACAAGCCTTGGCCCAGCCTCCTTCAGACCTACACAGCAAAGCGTGGCCTCCT TCTTCTTGCCTCATGAGTCGAACCAGAACTACCACCATGATCAGCAGCAACAACAACAAGGGTTGGTGCAGCAAAACAAG TCGTTTCAAGGGCTAATTCAATTGTCTGAACTCAACAACCACCACCATCACAATCACAACAACAATTCTCCATCAGGTGG TGCCAACAACAACAGCCTCTTCAACCTTCCATTCCTTTCAAGCAACAACAGCACCAACAGCAGCAACACCTCCTTCTCGG ACCACTTCAATGAAAATGGTAGTGTCAACGACCAAGCCACCAATTTCTTCACCGGCAACGTGATGGGTGGCGGTGGCGGC GGCGGTAGTCATCAGCAGCACCACCAAACAACAGCAACAACCTCCGCTGCTCCTTCTCTGTTCAGCACATCCCTCCAAGC CAACAACAGTGCAATGGCTCACATGTCTGCAACTGCACTCCTTCAGAAAGCTGCTCAATTGGGTACAACTTCAAGCAACA GCACCGCTTCTCTGTTGAAAAGCTTTGGAAGCTCTTCCTCTAGCAGTGCACCCAAACCAATGGCTGGTGCTGCTGCAAAC TATGGCGGCGTCGGCGTCGGTATGTTCAACGAGCAGAACAACCTGCAGGACTTGATGAACTCGTTTGCTGCGGCAAGTGG CAGCGGCGGCCATAACAATGTTTCCTCCATGTTTGAAACTGGGGGGTTTGAGGCTTATGATCGTGCAGGTGGTGTGAGTA GGGATCAGCAGAAGATGCAGGCGGCGATGAGCATTGGAGGGTCTGATAGGCTGAGTACTCGTGATTTTCTTGGTGTTGGT CAGATTGTGAGAAGCATGAGTGGTGGTGGACAAAGAGAACAGCAACATGCTTTTAATGCTTTGGAGGCAGAGAGAAATGC TGCTGCTGCTACAGCTGCGCCGTCAGGGCAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA
Protein sequence (LotjaGi5g1v0345700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASSSSASLFGFREEDNQMNQQQQHSLVAAAPSSSATPSAPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVC NKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKY AVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSSAIGSHLYGSSSNNMGLALSHVGPQL SNMQPSDLNNNNQSAELLRLGGAAGRTGVQFDQMFQTSLGPASFRPTQQSVASFFLPHESNQNYHHDQQQQQQGLVQQNK SFQGLIQLSELNNHHHHNHNNNSPSGGANNNSLFNLPFLSSNNSTNSSNTSFSDHFNENGSVNDQATNFFTGNVMGGGGG GGSHQQHHQTTATTSAAPSLFSTSLQANNSAMAHMSATALLQKAAQLGTTSSNSTASLLKSFGSSSSSSAPKPMAGAAAN YGGVGVGMFNEQNNLQDLMNSFAAASGSGGHNNVSSMFETGGFEAYDRAGGVSRDQQKMQAAMSIGGSDRLSTRDFLGVG QIVRSMSGGGQREQQHAFNALEAERNAAAATAAPSGQSFGGGGGNFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 60 | 60 | - | – | |
| PANTHER | 1 | 580 | 580 | 9.0E-214 | – | |
| PANTHER | 1 | 580 | 580 | 9.0E-214 | – | |
| MobiDBLite | 1 | 36 | 36 | - | – | |
| Gene3D | 71 | 98 | 28 | 3.8E-5 | – | |
| SUPERFAMILY | 74 | 171 | 98 | 1.4E-7 | ||
| Pfam | 75 | 97 | 23 | 3.2E-5 | ||
| ProSiteProfiles | 75 | 97 | 23 | 10.99 | ||
| SMART | 75 | 97 | 23 | 0.0052 | ||
| ProSitePatterns | 77 | 97 | 21 | - | ||
| Gene3D | 110 | 199 | 90 | 9.4E-7 | – | |
| SMART | 116 | 146 | 31 | 130.0 | ||
| SMART | 151 | 171 | 21 | 150.0 | ||
| MobiDBLite | 333 | 354 | 22 | - | – | |
| MobiDBLite | 338 | 354 | 17 | - | – | |
| MobiDBLite | 394 | 414 | 21 | - | – | |
| MobiDBLite | 588 | 607 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0345700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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