Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0347600 |
| Transcript ID | LotjaGi5g1v0347600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G8A2Z5|G8A2Z5_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi5g1v0347600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66390863..66392503) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAGGCACAAAAATTTGTTGAGAGAGGGTAATTCATGACATAGTGGAATAGCTTCACTTTGCTCTGACCAACATTTA CTTTGGAGACCATGCCGCATGGTATTTGCTACTATCTTCTATCTTCTTGGTAAGGAGAGACACTACACAAACTCCATCCA TGGCTGGAAATACTGTCCTGCCTATCAGTTTCTTCAAGATCATTCTCAAAACTAATCTTCAAAGCCTTGTAAGCATTGTT CCTACTTAGCATTCTATCAAATTTGCATTTTTCTTTATAATTAGATCATATTTGCATGTGGAGATATTTGTTGTTGATAT TAGATTAAAATCATACTTATACATATAAGCACTAGAGATTTGATTAGAGAAACACATTAATTTGAGATGCACGAGGCTTG TTTTATTTACTGGACAATACATCAAATACTGACCAACAGGGTTTTAATCTTCACACAGAAATTACCTAAAAAGTTCACAG AGAAATATGGTGGTGCTTTGTCTAATCCAGTGCTTTTGAAGCCTCCAGATGGAACTGATTGGAAAGTTTATTGGACAAAA CAGAATGGTGAGGTTTGGTTTCAAAAGGGTTGGAATGAATTTGCTCAAAATTACTCTCTAGATCATGGGCATCTGGTGGT GTTTAAATATGGAGGGACTCCACATTTTGATGTGCTCATACTTGATCAAAGTGCCTTAGAAATACACTATCCTTCTTGTG ACTTTGACCAGAGTGATGATGACTGGCCAGATCAGAAGCCTAAGCAAAAGTTACCAATACTTTCTCCTCCACCATATAAG AATGACAGAGGTACAATTTTGACTTTATTTTCTGTTGATTGTGTTTGCATGTCACATATTTTGAAGGGTATATAGCCCCT TTATGTACATTTTCAGTACCATGTGTCCATGTGGGTTCAAGTTCTCAGTTGATGCTATTTAATAGAAGCTAGATAGTTGA AACTAAGTACCAAAATGAAGTTCAAAGTTATCATTGAATTGGCCAACGGGAGCTAGTGAGTGTGTTTTAACAGGTGAGAA TAGTGCTGCTCAAAGAAGTTCATTATCTTTGAATTGGCCAAGGGGAGCTAGAGCGCAGGAAGTAGCTGCTGCATTCATCT CAAATAATCCTTTTTTCACTGTTACCATAAATCCTATTAATCTTGCTGGAAGTCGGCTGGTAAGGTTAATTAAACACAAA AGTGACTACATTTACATTCAATTTCATGAGGTTTTGTTCAATCTGAATACTGATATAAAATGTTACACACAATGCAGTAT GTACCAGGTTTAGAAGGTTATGTCGAGAATATTGAGAAGGTTGTGAAGCTGCAGATTGGGGAAAGATCATGGAATGTGAA GTTGCTCCGTCTTCGCCTAACTTCAGGTCGCCGCTTCTGTGCTGGTTGGTCCTTGTTTGCAAAGGAAAGTGGATTGCAAA CCGGAGACGTTTGTGTCTTTGAATTCATCAACAGAGAAGAACCAGTTTTTGAAGTTCATATTTCCAAAAGCCACAGTTGA TTTATCGACTTGGAGCTGTTGCTTTTTGTAAAAATTAGAAGATGGAACAATTTCCATTCCTTTGAATGGGTGACCTTTGG TTAGTTTTACTTATAGTTGACTTTGAAATACTGGAAGGCAA
CDS sequence (LotjaGi5g1v0347600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGAAATACTGTCCTGCCTATCAGTTTCTTCAAGATCATTCTCAAAACTAATCTTCAAAGCCTTAAATTACCTAA AAAGTTCACAGAGAAATATGGTGGTGCTTTGTCTAATCCAGTGCTTTTGAAGCCTCCAGATGGAACTGATTGGAAAGTTT ATTGGACAAAACAGAATGGTGAGGTTTGGTTTCAAAAGGGTTGGAATGAATTTGCTCAAAATTACTCTCTAGATCATGGG CATCTGGTGGTGTTTAAATATGGAGGGACTCCACATTTTGATGTGCTCATACTTGATCAAAGTGCCTTAGAAATACACTA TCCTTCTTGTGACTTTGACCAGAGTGATGATGACTGGCCAGATCAGAAGCCTAAGCAAAAGTTACCAATACTTTCTCCTC CACCATATAAGAATGACAGAGGTGAGAATAGTGCTGCTCAAAGAAGTTCATTATCTTTGAATTGGCCAAGGGGAGCTAGA GCGCAGGAAGTAGCTGCTGCATTCATCTCAAATAATCCTTTTTTCACTGTTACCATAAATCCTATTAATCTTGCTGGAAG TCGGCTGTATGTACCAGGTTTAGAAGGTTATGTCGAGAATATTGAGAAGGTTGTGAAGCTGCAGATTGGGGAAAGATCAT GGAATGTGAAGTTGCTCCGTCTTCGCCTAACTTCAGGTCGCCGCTTCTGTGCTGGTTGGTCCTTGTTTGCAAAGGAAAGT GGATTGCAAACCGGAGACGTTTGTGTCTTTGAATTCATCAACAGAGAAGAACCAGTTTTTGAAGTTCATATTTCCAAAAG CCACAGTTGA
Protein sequence (LotjaGi5g1v0347600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNTVLPISFFKIILKTNLQSLKLPKKFTEKYGGALSNPVLLKPPDGTDWKVYWTKQNGEVWFQKGWNEFAQNYSLDHG HLVVFKYGGTPHFDVLILDQSALEIHYPSCDFDQSDDDWPDQKPKQKLPILSPPPYKNDRGENSAAQRSSLSLNWPRGAR AQEVAAAFISNNPFFTVTINPINLAGSRLYVPGLEGYVENIEKVVKLQIGERSWNVKLLRLRLTSGRRFCAGWSLFAKES GLQTGDVCVFEFINREEPVFEVHISKSHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 102 | 99 | 2.1E-24 | ||
| ProSiteProfiles | 8 | 101 | 94 | 13.126 | ||
| PANTHER | 9 | 267 | 259 | 8.8E-71 | ||
| PANTHER | 9 | 267 | 259 | 8.8E-71 | – | |
| CDD | 10 | 99 | 90 | 9.70649E-17 | ||
| SUPERFAMILY | 10 | 108 | 99 | 1.96E-21 | ||
| SMART | 11 | 101 | 91 | 5.3E-13 | ||
| Pfam | 19 | 93 | 75 | 7.2E-14 | ||
| MobiDBLite | 114 | 143 | 30 | - | – | |
| Gene3D | 157 | 268 | 112 | 6.3E-23 | ||
| SUPERFAMILY | 170 | 266 | 97 | 1.35E-14 | ||
| CDD | 173 | 266 | 94 | 3.09184E-13 | ||
| SMART | 174 | 268 | 95 | 4.5E-10 | ||
| Pfam | 174 | 264 | 91 | 5.1E-10 | ||
| ProSiteProfiles | 174 | 268 | 95 | 11.251 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0347600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…