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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0354800 |
| Transcript ID | LotjaGi5g1v0354800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group protein; TAIR: AT5G23420.1 high-mobility group box 6; Swiss-Prot: sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7; TrEMBL-Plants: tr|I3SCF2|I3SCF2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0354800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67025085..67030183) extracted from Lotus japonicus Gifu genome v1.2.
CTGGCCCATTAAAAGTGAGAAAGGAAGGTGGATCGTTAATTTGATTTCATATGTATTCCCCCGCGCGAGTGCAAAACCGC GTTGGCGCTTAAACGAAAATCTCAATTCCCAAATTCAACTTTCCCTCCTTTTAATTTCATTTCATATATAAAGACACTCT TCTTTGCTTCAATTCATTGTCAAATTTGAGTCGCTAGTGAACCAGTGAGAGAGAAGAGAGAGAAAGTAGATCGGAACTAG GGTTTTGAAATGGCGTCGCAGGGAAGGAAGAGGATCGACGCCGTCGATTCTCGTGCCGCCTCCGTTCTCGTTCGCTCCAG AGACGGCAGCGCTTTCGCCCGATGCGAAGAGTGTAACAAGAGTGTTCCTGTTGCACTCATCAGCATGCACAGTTGCAGCC TCGAAGCAAAGATCAAGATGAATCTCGGTATGTGTTGTGATGTTAACATCTCAATTTCTGGAAAATTGCTTGTTCGTTTC ATCGGTTGCTTGCTTTGTTGTGCTTTTGATTTACTTGGATCTGTTGCTTTTTCTTTCAGATGCTCAGGTTATTGAACAGG CTAATGAAGCCAAGAAGACTGAGAGGTGAGTCAATTTTTCGATCTGGAAAATTAGAACAAATTTTAAAGCATCTCTTAGT AGAGAAGCACTAGATTCATCTGTGTCTGTATATAGGTTTAGGTTCATCTAAGCATAATTATTGATTTAGCTATTGAAGGA AAATAATAGGCATTCTACTGGTTTTATTTCAACACTGTGATGAAGTTTAATTTCAACTTGTTTTGGTTTTATTTGGACAT TGTGATGTAGTTGAATTTCAGCTTGTTCTAATTTCAATGTGTTATATTTGAAGAAATTGAGTATGTTATCTTATTGATTT AGCTATTGAAGTAGAATAATAGGCTCTTTGCTTGTTTGAAGTATTGTTCCTATTGCATCTCATGATAACTTTTACCTAAT TAATATTAAGGACACATGTATTGGATGATTTGGAAATCAAAATGTTAGGTCAACACTGAAATGGTGCCGATTAAGTGAGA TAGCAAGATAAGAGGTATAGGATAGTTGTGATTGTTAAATATTTCTTTAACAGTGATATATGATGTGATGTAAATGGAAT AGTGAGATAGAGAGGAAAATGAGGATTTATCATTTATGAATAACGTTCTTACTGTTGTTGGTGGTTAATGAATTGGTACT GATATGGTAAATGTAACCTTCGTTGCTCACACTGTGCAGGAAGAAGCCTAGTTCTAAAGAACCAAAGGCAAAAAGGGCTA AAACTGAGAAGGCGAAGAAGGTCAAGGATCCTAACCAGCCTAAGCGTCCTCCCACTGCCTTCTTTGTCTTCTTGTAATGT TCTGTTGCCCCATTTGTGTGCTGTTGGTTAATGGTTCTGCTTTTCAGTCTTTAATTGATGCCATACTGTGTTTCAGGGAT GATTTTAGAAAAGAATTTAAGGAAGCAAATCCTGGTTCAAAGGATGTCAAAAGGGTATGTTAGTAAATATGGTTCAATAG ATACTTGATTACTTGTGTTTTGCATTTTTATGTCATTATTCATGAATCATACCAATTTCTGTGGTATTCATAATAGGTTG GCAAAGAGGGTGGGGAAAAGTGGAGGGCTATGACTGATGAAGTAAGTTAGTTATGTACAGTTTTCTTTCTAGAATTTCTT TGGGCATGTAATATTAATAATGTGATGTTGACCAAGTGTTGTGCATTGGCTTGATGGTTCAGGAGAAGAAGCCTTATTTG GAAAAAGTTGCTGAGCTCAAGGAAGAATATGAGAAGGCTATGGCAAATTACAATGCTGCTGAAGATGAGGTATGCCTCTT GTTTATCTTACATGCTTGTTTTATATAATGTACTTGTTTATGCCTTCTAAAGCTCTATTTTTTGTTCAGGAAAAAGAGGA AGCTGATAAGGAAGCTGCTCCCACAGAAATTGAAGAGCTGACAGATGATGAGTAGTGGTAGCATCTTGCCCTGCGTAAAT CTGATTAGTATGTGGAAAAGAGCCATTTAACATAGTCTAGGGTTGTAAATTTTGGAACATGTTTTGATTGGATGCGACAA TTTTAATGGCTTTGGATCCCTGTGCCTCATCTTTTTGTACTTCCCTGTTAAATTCTAAGTTACATTATTTTCTACATGAG GTGCGTTGTTGCCTTGCCCTGCATTCCTCACTCATGAATGTTTGAATGTGAGTTTCGGCTCCTGCTCATGTATGATTGAT GTATATCTTTATAAAATTGTGTGTTTGTGTTTAACTAATGAAAATGAAATTGCTGGTACCAGAAAAATGTAATTCACACA AAGTTGTGCCACCAATAAGGCTTTTTGTATTTGAAACACAATTTCATTTATTGCAAAATCAATATGACTCGAATTAAGTT TGTAATGATTATCCAACATCCACTGAGGGCTTGTTGAACTTGAGTAATGCAGTCAATTCTGGAAAGCAAGTTTCACGACC ACACATGTGCTGGGGCATTGTTGCAATACTTTCTAGTGTCCCCACGTAATACAAAGCAAGTTGCAAACATGTGCCAGGGC CAGGCTATTTATGATTCAGATAGGGAAAGAATCTTGCCAAATGCGTACATGTTTTATTGAAATAATATTGAATTGTAAAA TTGAACTTAAACATTGTGGTCAACTTGGAAATAAAGATTCAAATCTATCGTACCCTATTATATTTCTCACATGTAACGAT GGTCACAAATCATGAACTCATCTGCTATGATAATTGAGTCAGCACCTCACTGACCTATCTCCCCTAGTTTCTATCCCTTG CATGGCTGCAAAGGTTTACCACATAAGCACAAGTTGTGGGCGTAAGCAGCTGCTGGAAAGATGTTTAGTGGTCTTGTTTG TGGTATTTCTCCACAAAGCCTGTTTGCCCTGAAGCTTGCATGCTTCAGATTAGTTATCTGTGACAAGCTACTAGGAATTG ATCCTGCTAGGCTGTTTATGGATACATCAAGCCATTGCAGCTCCAGCAACTGACCTAGACTTGAAGGAATTGCTCCCAAT ATGTGATTTCTTGATATGTCCAATCTCTCAAGGTCTATCAAATTTGAAATAGAAACTGGGATTGGACCTGATATGTTGTT GCTTCCCAAGTTCAGCACCTTCAAGCTTGAGCCTTCTGCAAATTCTGGAAAATGACCTGAAATGAAATTGTTTGATACAT CTATGACCTCCAATGAGCTGCTTGTCCTGTTATTTATGATTGCTGACAGCGAACCCTGGAGAAGATTTGCATGCAAGTCT AAGAAAGACAACTCTGGTGGCAACTTTATTTGAGAAATGTCAAACCTCAACTGGTTGTTTGAGAGCTTGAGCTTCTGCAA GCTGGACATGTTTGTGAAGAAACTAGAAATGCCACCAACTAGGCAGTTATCTGATAGGTCAATGGAGCTCAAAGAGTGAG CCCTGATGAAGTGAGGAAGATCTCCCTTCAATTCACACCCAGCTAGATGAACATCTTTGAGTTGCTTGCTTCTAATCCAG TCAGGGACACTTCCCAGGCTGAGATTATTGTAAGACAGGTCTATGGACAAAAGGGCAGGGATACCCTTGAAAGGAATAGC AGGTAAGGGACCTGAGAGACCATTTCTTGATACATTAAAGTACCAAAGGTTCTGTAATCCTGATATGGACAGTGGAATAT GCCCTGAGAGTTTATTTCCACTGAGTTGAAGACTTGTTAGGGATTTAAGACTTCCAATCTGATCTGGGATGTTCCCTGTG AGGTTGTTATAGCTCAAGGACAAGTCCAAAAGATTGACAAGGCTGAACAAGGAAATTGGAATTTTTCCTGTTAGAAGGTT ATAGGAAAGGTCTATAAAGGTCAGATTTTGGAACTCTCCAACAAACTCTGGGATAGACCCTGATAATAAGTTGTAGCTGA GATCAAGGTACTGCAAACTTCCAAGGGTTTTGAAACTGAGGGGGACAGGACCTGTCAGAAAATTTCTTGCTAAATTAACT TGGATAAGGTTTCTGAGGCTCCCTATTGTTGGAGGGATCTGGCCTTTGAGATGGTTCCCACTCAGTATAAGGGTCTGCAG CAAAGGTAAATGGCCTAAATTTGGAGGAATGCACCCTCCAAGGGAATTGTCTTCCAGAACTAGCTGTGTGAGGTGGGTTA AATTTGAAAGGCTAGTAGGAATTGGTCCTGTAATGTGCTTCATCCCACTTATCACCAATACCTCCAAGAAATGCAAATTT CCTAGTGAGGGAGAAAGAGAGCCTTTCATATAACTGGCACTGTCTCTATCAGGCCTCTGTATCTGCAACACATTGACTCT ACCTGTGGATGGATTGCACTGAACTCCTTCCCAGCCTCCATCACAGCAATCCCTGCTTGTCCATGAAGAAAGAGTCTCTG TTGTGTCCTTGAAAATGCTTGCTTTGAAGCTCAGAAGAGAAGCTCTGTCTTCTTCTGAACAGATTGGGGAAGGAGACAGT GCTGCTACTGTTACACTTTCTGAGAACTGTCTCAGGAATGAAAATATCAGAACAAGGTTGAAAACCCATGTGAAAAAATG CATTTTGGAAGGTGGGACTTGATCAGATCAGGGTCTGCTGTGAAGTTGGGATCTGCCAAGAGAATTTTGAGTAAGTAAAA GAAGAACTTTATAAAGAAAATAAAAGATGAACTATATTGTTAGAAGAAAAAAAGGATAGAAAAAGTACCACTCCAGCATT GGTTTTTCTGTTCTTTCACGTAGACAGGAAGGTATGGATTTGATGATGACAAGTGAAGAGAAGGGTGTCTGAAAATTATG ACTTTGTTGGACATGTAAATATTACATGCTGGATTGAGAAAGCATTCTCTTATTTATAGTTGGTTTTGCAGAAGAGAAAA GCTTGTTGCTGAAAAGAAAAGGAAATTTTTAGATGAAGCATTGGGATCAATTTAAAGAAGTTCACATGGGAGCTTGTGAC CGTTTGATGAATCACGGGGTTCCTTGGAGGCTTGGAGCATTTGAACGTTGGAGCGCACTAGATTCAAATAATTTATCATA GCCTTATTATGCCGTCCACATGTTACATGGTATAATATTTTTTCTTGTCTGAGTTTTAA
CDS sequence (LotjaGi5g1v0354800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGCAGGGAAGGAAGAGGATCGACGCCGTCGATTCTCGTGCCGCCTCCGTTCTCGTTCGCTCCAGAGACGGCAG CGCTTTCGCCCGATGCGAAGAGTGTAACAAGAGTGTTCCTGTTGCACTCATCAGCATGCACAGTTGCAGCCTCGAAGCAA AGATCAAGATGAATCTCGATGCTCAGGTTATTGAACAGGCTAATGAAGCCAAGAAGACTGAGAGGAAGAAGCCTAGTTCT AAAGAACCAAAGGCAAAAAGGGCTAAAACTGAGAAGGCGAAGAAGGTCAAGGATCCTAACCAGCCTAAGCGTCCTCCCAC TGCCTTCTTTGTCTTCTTGGATGATTTTAGAAAAGAATTTAAGGAAGCAAATCCTGGTTCAAAGGATGTCAAAAGGGTTG GCAAAGAGGGTGGGGAAAAGTGGAGGGCTATGACTGATGAAGAGAAGAAGCCTTATTTGGAAAAAGTTGCTGAGCTCAAG GAAGAATATGAGAAGGCTATGGCAAATTACAATGCTGCTGAAGATGAGGAAAAAGAGGAAGCTGATAAGGAAGCTGCTCC CACAGAAATTGAAGAGCTGACAGATGATGAGTAG
Protein sequence (LotjaGi5g1v0354800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASQGRKRIDAVDSRAASVLVRSRDGSAFARCEECNKSVPVALISMHSCSLEAKIKMNLDAQVIEQANEAKKTERKKPSS KEPKAKRAKTEKAKKVKDPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRVGKEGGEKWRAMTDEEKKPYLEKVAELK EEYEKAMANYNAAEDEEKEEADKEAAPTEIEELTDDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 192 | 190 | 1.4E-79 | – | |
| PANTHER | 3 | 192 | 190 | 1.4E-79 | – | |
| Coils | 56 | 76 | 21 | - | – | |
| MobiDBLite | 67 | 107 | 41 | - | – | |
| MobiDBLite | 67 | 101 | 35 | - | – | |
| Gene3D | 88 | 174 | 87 | 3.6E-28 | ||
| SUPERFAMILY | 93 | 173 | 81 | 6.28E-25 | ||
| SMART | 101 | 172 | 72 | 4.8E-25 | ||
| CDD | 102 | 168 | 67 | 1.04051E-18 | – | |
| Pfam | 102 | 171 | 70 | 4.6E-22 | ||
| ProSiteProfiles | 102 | 171 | 70 | 19.604 | ||
| Coils | 149 | 183 | 35 | - | – | |
| MobiDBLite | 171 | 197 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0354800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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