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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0356400 |
| Transcript ID | LotjaGi5g1v0356400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Harbinger transposase-derived nuclease; TAIR: AT3G55350.1 PIF / Ping-Pong family of plant transposase; Swiss-Prot: sp|Q9M2U3|ALPL_ARATH Protein ALP1-like; TrEMBL-Plants: tr|I3RZV8|I3RZV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0356400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67133244..67137625) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAAAGTAAACTTTCTCTCTTTGATGAGAGCTCTCTTAGAAACCACAATAGCTATGGTGAGTTGTTGCGTGATGCTTG TGGCAAGTGGATTGCTGACTTTTAAGTTTTCTTTGGTTTTTTCTGTTGTGTTGCAAGTGGAGCTCATTGTCATTCTACTT GGTCGTGTGTTGAGATATGGTTCTCATCAGATCTAGCTTATTTCAGATTCTTCGTTGGTCCTTAATCTCATTTCAACACA CATATCACCCATTTCATGTGTACGCTAGTATGATTAACTCGTGTTATTTGACTGCTGTCAGCGACCTCAACATACCTTGA GAAAGGGAAATGCATCGGCAGATTTTTTAGACAAGATCGACTCCTCTTCCAAAAATAAAAACTCATTTGGGTGTTTCTCT CATTCTGATCAGCAATTATTCAGGTGTTGTGCTCCTAAGAGTAAGTTTTTCTTTCTCTTCCTATATAAAAAAGTTTTCTC CTCTTCATCTCTACTCAATCACTCACATTATTCTCTCTACTCTCTTTCTTATCTATTCTCTCCAATCACTTTTTATCATT AACCAAACAAACAGTAAGTGTCTCATCACATACATATTATATATATTATTGTAAATTTTATTTTATTTTACTATTATTAT TATTATTATGATTATTATTATTATTATTATAATATATACTCCCTCCGTTCCTAAATAACTGACACTTTAAGCCATGGTTA AAATTACAATCTAATTTCCTACTATACCCTTCATCTCTTATATTGATTTTAACTTTTCAATTTTTCTACCATCAATAAAT GAAGGGTACAATTGATAAAGTATAATTAATGTTCTCTTAAACTTTGTAAAATGATAAATAATTAAAAATAAAATATAACT AAAAATAGTGTTAGTTATTTAGGAATGATCCCGTATATATGTAATTCTCGTTCCGTGCTAACCCATAGCAATAGCATTCG TGTCTTTGATATATATATTTGTGTCCTCTTGTCCACTCCCCCCTGCCTTCAACTTCTCATATATCACTTGGAATCTCTGC AGACACCTTTGATTTCATCTTCCATGGACTTCAAATCTTGCTCATCATTAATGGGTTGAAGATTTTCCTTGTCTTTGTCT TGGTGTGTTGTTATTAATTGGTGGGAACTTGCAAGTTGCAACTTGTTTTTATTGTGGGTGGTGGTCAATGAGTTCCATCA AAGGGTTCAAGAAGAGGAAGAAGACTGAAAACAAAGATGACCACACTGCAACCCCATTGTACTCCCAACCCTCCGATTGG TGGCATCACTTCTCCCACAGAATTTCAGGTACTCTCACTCACTATCTCCGCTTCTTCCTGTGCTGCTGTTCATCCTTATT TTATTTTTTCTGATTATTGTTTTCTTGTCAATTTTTGCATGTTGGTACTGCTTTTAATTGGCATTATAAGTTGAATTTTT TAGCAATGGGTGAAATTCCAAATGCTACCTACTTCTTTCAATGGATCCTATTGCCTGATATTGTGACATGATATTTGGTC ATTGCTTGCTTTTATGTGTTCATTCACCCAGAGGGGTAGTTGCTCTATTTTTTCATGTAGATAGGGAAAAAAAAACTAAA TGGTATTGTTGTAGATGATTTTATATTTGTTCCTTCGATACTTGACTTTTCACCTTCATGTTGATATTATTGAGCATACA TCTTGGTGAGTTATTTAATAAATAATGCAACCTGATATCTTTGACCTAAATGTGTTTGTATTGCATATATACAGAATTTG TTTCTTACTTATGAACTCTGACAGATGTAGTGCATGCTTGTATAAACCGTGGAAAACCACGGTGAGCCAAAATCATGGTG GACTGAAGTAATTTCCCTTAGCTTTTGGGTCTGCTCACCGTGATTTTAGCTTCAACGTGTAGGCTTCAACCGTGATTTCT ACATTTCTCTTCTTGACTGTTTTATATTTGAAGCTTAACCTTCCAAATTGTGAAATCTTCTGTTGCGATATCACCGCTTA CACTATTTCTCAGCTATTACATGAACATTATTTCAATCAGTTTCACTTGCTGCAGTTATTCACTGTAGGTAACAATTTGC GTATTTCATCCTTTGTTTACACACTTCTTTCTCTAGTTATGCATAGATGTCAACACTTATTCTTACTTTCATGTCCACTG TGTCAATCCCATCTCTAATAGTCTAATGATCTTTCTTCCCATAGTCGAGCTCTTTTCTTCTCAATTTCTGCTTTGAAGAG TTATTTGCTCGTCTTCATACTGACTAACTATCAAAAACATGAGCAGTGAGATCACTTAAGTGAGGTTTCCTGGTTCATAA TTTTCAAATTTGTGGTCAACATGATACATTCTAATTGATAAACTGCCTATTGAATAGGGCTTATAGAATTTATTCAAGAT AAAAGTATATAGATTCTGTTGAAGTTCTTTGGTTAAATGTGAGAATGTGCTTAGGATATTATGTTACCTGAAAAGATAAA CGGGAATATATGTTTGAATGATATAGTTGATTCAATTTTCTCAGAGAATCAGCAATGCAGAGGTATGAACCCTTTGATCA ATTCATTATTATGCTTATTTTCTTAATCAAAATTCTATCTCATATTAAATATCACGCTATTGTATTCTTGAGTAGATTGC ATAACAGAAGAGAAGGATTTTACTAACATATCTTTCACAGAATCCAACTTTAGACAAAACATCTGGTTACACAGAATTTG CACATTTATTTCGACTTTATATACATGTGTCCTAAGAATGCATAGAAGATCATATCTGCCATTGCTTCTTCTGGCATGTG GACAACCCTCCTTTTATTTTGCATAAGAAGATGCTGGATGATATGCTAAAATTTCTTATTCAATGTATTTTTTTATTGTA AAACCTGATTGTCGATCTGATATGCTCATGCTTTAATTTTGCTAATTGTAGGACCTTTAGCTCAATCTAAAGATATAGGG AAATTTGAGTCAGTTCTCAAGATCTCAAGAAAGACGTTCAACTATATTTGTTCTCTTGTGGAAAAAGATATGCTGGCCAG ATCCTGCGTTGATCTAAATGGAAACCATTTATCTTTGAATGACCAAGTAGCTGTTGCTCTTAGAAGGCTTAGCTCTGGCG AGTCATTGTCAACCATTGGCGACTCATTTCTTATGAACCAGTCAGCTGTTTCCCAGGTAACATGGCGGTTTGTGGAAGCT ATGGAAGAGAGAGGGCTCCACCACCTTAGCTGGCCTTCCACCGAAACTGCAATGGAAGAGATAAAGTTCAAGTTTGAGAA CATTCGGGGCCTTTCTAATTGTTGCGGTGCAGTTGACAGCACACACATACTGATGACTTTGCCCTCCGGAGACACTGAGA ATAGTGTATGGCTTGATCGTAAGAAGAATTGCAGCATGATCTTGCAAGCCATTGTGGACCCTGATCTGAGATTCCGCGAT GTAGTTGGCGGATGGCCAGGGAGTCTGAGTGATGAATATGTGCTCCGACACTCGGAGTTTTTCAAACTTGCTGAAGAAGG GAAGAGGCTAAACGGGGCGGAGAAAATGCTCCCGGAGGGAACTGCGTTGAGGGAATATATAATTGGGGATACGGGGTTTC CCCTTTTGCCATGGCTTCTCACTCCTTATGAATGCAAAGACCTCTCGGATGTCGAGGTTGAGTTCAATAAAAGGGTGGTT GCAACCCATATGGTGGCTAAGAGAGCACTGGCTAGGCTGAAGCAGATGTGGAAGATAATTCAAGGTGTGATGTGGAAGCC TGATAAGCACAAGTTACCAAGAATTGTCCTTGTTTGCTGCATACTGCATAATATAGTGATTGATATGGAGGATGAAGTGA TGGATGAAGTGCCCTTGTGCCCTCAGCATGATTCTGGATATCAAGACCAGACTTGTGAATTTGCTGACAACACTGCCTAT ACAATGAGAGAGAAGCTTTCCCTCCACTTATCAGGCAATCTTTCAACTTGAAAGATTTTTTTCTTGTGATTGTTACAATT TAATTGGAGTCATATTGACATGGATTTTTACTCCTATTTTCATGTTGGTTGGCAACTAAGTTTGACACAAATAAATATCA ATTGTTTAAGTTGCATCTGGTTCAATGTAGGTAGTCTATCCCACCTAATGGGAAAAGACTTGGAGTTGATTTGAATCTCT CAATTGTAAAAAAACTTGACCATCTCACCATTGATTATTATGTGTTTAATAATTAGACAAAAAAATGAGAATTAAATCAA TGGTGAGATGATTAAACTTAACATGGTCAATTTATTTACAATTGATAGGATCTAAATCCGCATTTGACTACGCTTTTCAA TCGGCCAAACGTGCATTTCTTCGGTAGCAAGCCATAGGTCGATTTAGAAATTACGCCCGTCC
CDS sequence (LotjaGi5g1v0356400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCCATCAAAGGGTTCAAGAAGAGGAAGAAGACTGAAAACAAAGATGACCACACTGCAACCCCATTGTACTCCCA ACCCTCCGATTGGTGGCATCACTTCTCCCACAGAATTTCAGGACCTTTAGCTCAATCTAAAGATATAGGGAAATTTGAGT CAGTTCTCAAGATCTCAAGAAAGACGTTCAACTATATTTGTTCTCTTGTGGAAAAAGATATGCTGGCCAGATCCTGCGTT GATCTAAATGGAAACCATTTATCTTTGAATGACCAAGTAGCTGTTGCTCTTAGAAGGCTTAGCTCTGGCGAGTCATTGTC AACCATTGGCGACTCATTTCTTATGAACCAGTCAGCTGTTTCCCAGGTAACATGGCGGTTTGTGGAAGCTATGGAAGAGA GAGGGCTCCACCACCTTAGCTGGCCTTCCACCGAAACTGCAATGGAAGAGATAAAGTTCAAGTTTGAGAACATTCGGGGC CTTTCTAATTGTTGCGGTGCAGTTGACAGCACACACATACTGATGACTTTGCCCTCCGGAGACACTGAGAATAGTGTATG GCTTGATCGTAAGAAGAATTGCAGCATGATCTTGCAAGCCATTGTGGACCCTGATCTGAGATTCCGCGATGTAGTTGGCG GATGGCCAGGGAGTCTGAGTGATGAATATGTGCTCCGACACTCGGAGTTTTTCAAACTTGCTGAAGAAGGGAAGAGGCTA AACGGGGCGGAGAAAATGCTCCCGGAGGGAACTGCGTTGAGGGAATATATAATTGGGGATACGGGGTTTCCCCTTTTGCC ATGGCTTCTCACTCCTTATGAATGCAAAGACCTCTCGGATGTCGAGGTTGAGTTCAATAAAAGGGTGGTTGCAACCCATA TGGTGGCTAAGAGAGCACTGGCTAGGCTGAAGCAGATGTGGAAGATAATTCAAGGTGTGATGTGGAAGCCTGATAAGCAC AAGTTACCAAGAATTGTCCTTGTTTGCTGCATACTGCATAATATAGTGATTGATATGGAGGATGAAGTGATGGATGAAGT GCCCTTGTGCCCTCAGCATGATTCTGGATATCAAGACCAGACTTGTGAATTTGCTGACAACACTGCCTATACAATGAGAG AGAAGCTTTCCCTCCACTTATCAGGCAATCTTTCAACTTGA
Protein sequence (LotjaGi5g1v0356400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSIKGFKKRKKTENKDDHTATPLYSQPSDWWHHFSHRISGPLAQSKDIGKFESVLKISRKTFNYICSLVEKDMLARSCV DLNGNHLSLNDQVAVALRRLSSGESLSTIGDSFLMNQSAVSQVTWRFVEAMEERGLHHLSWPSTETAMEEIKFKFENIRG LSNCCGAVDSTHILMTLPSGDTENSVWLDRKKNCSMILQAIVDPDLRFRDVVGGWPGSLSDEYVLRHSEFFKLAEEGKRL NGAEKMLPEGTALREYIIGDTGFPLLPWLLTPYECKDLSDVEVEFNKRVVATHMVAKRALARLKQMWKIIQGVMWKPDKH KLPRIVLVCCILHNIVIDMEDEVMDEVPLCPQHDSGYQDQTCEFADNTAYTMREKLSLHLSGNLST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 383 | 383 | 6.4E-190 | – | |
| PANTHER | 1 | 383 | 383 | 6.4E-190 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Pfam | 168 | 334 | 167 | 6.1E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0356400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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