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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0358200 |
| Transcript ID | LotjaGi5g1v0358200.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor 3B subunit-like protein; TAIR: AT3G55200.1 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; Swiss-Prot: sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1; TrEMBL-Plants: tr|V7BAV6|V7BAV6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0358200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67288544..67289206) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGAATGGTGGGGAGGATGAGGATAGAGATGATCCGCTCTCGGATGAGCATTATGGTTATCCTAAAGCTGAATCAGA CAAGTGGGTTTCCTGCATCAGAGTTCTTGATCCTAGGTCAGGAACTACAACCTGTCTCTTGGAGCTTCAGGAGAATGAGG CCGCATTCAGCATATGCACAGTAAATTTCCATGATAAGGAATATGGAACTCTTTTAGCTGTTGGCACTGCAAAGGGACTG CAATTTTTGCCTAAAAAGAGTTTAGCTGCCGGATTTATTCATATATATAGGTTTGTAGACGAGGGAAGATCTCTTGAACT TCTTCACAAAACCCAGGTTGAAGGTGTTCCTCTTGCTCTATGTCAGTTTCAAGGAAGATTACTTGCAGGAATAGGACCTG TGCTCAGGCTATATGATCTAGGAAAAAGGAGATTATTAAGAAAATGTGAGAATAAGCTATTCCCAAACACAATTGTCTCT ATTCAGACATATCGTGATCGAATTTATGTTGGTGACATCCAAGAGGTATGTTTCTGTTATATATCTTTGTTATATATCTT TATCTAATGAACAACTGGGTATTTGAGTTAGGCATTCTGAAATAGTTTTTTTTCGTGACTTCTGTATTTTGCTGGTAGCA TTTGATTTTGCATTGATTTCTGA
CDS sequence (LotjaGi5g1v0358200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATGGTGGGGAGGATGAGGATAGAGATGATCCGCTCTCGGATGAGCATTATGGTTATCCTAAAGCTGAATCAGA CAAGTGGGTTTCCTGCATCAGAGTTCTTGATCCTAGGTCAGGAACTACAACCTGTCTCTTGGAGCTTCAGGAGAATGAGG CCGCATTCAGCATATGCACAGTAAATTTCCATGATAAGGAATATGGAACTCTTTTAGCTGTTGGCACTGCAAAGGGACTG CAATTTTTGCCTAAAAAGAGTTTAGCTGCCGGATTTATTCATATATATAGGTTTGTAGACGAGGGAAGATCTCTTGAACT TCTTCACAAAACCCAGGTTGAAGGTGTTCCTCTTGCTCTATGTCAGTTTCAAGGAAGATTACTTGCAGGAATAGGACCTG TGCTCAGGCTATATGATCTAGGAAAAAGGAGATTATTAAGAAAATGTGAGAATAAGCTATTCCCAAACACAATTGTCTCT ATTCAGACATATCGTGATCGAATTTATGTTGGTGACATCCAAGAGCATTTGATTTTGCATTGA
Protein sequence (LotjaGi5g1v0358200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENGGEDEDRDDPLSDEHYGYPKAESDKWVSCIRVLDPRSGTTTCLLELQENEAAFSICTVNFHDKEYGTLLAVGTAKGL QFLPKKSLAAGFIHIYRFVDEGRSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKRRLLRKCENKLFPNTIVS IQTYRDRIYVGDIQEHLILH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Gene3D | 2 | 179 | 178 | 5.1E-45 | ||
| PANTHER | 23 | 177 | 155 | 1.6E-41 | – | |
| PANTHER | 23 | 177 | 155 | 1.6E-41 | – | |
| Pfam | 31 | 175 | 145 | 4.4E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi5g1v0358200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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