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LotjaGi5g1v0359230.1

Overview

Field Value
Gene ID LotjaGi5g1v0359230
Transcript ID LotjaGi5g1v0359230.1
Lotus japonicus genome version Gifu v1.2
Description Chalcone-flavonone isomerase family protein; TAIR: AT3G55120.1 Chalcone-flavanone isomerase family protein; Swiss-Prot: sp|Q8H0F6|CFI3_LOTJA Chalcone--flavonone isomerase 3; TrEMBL-Plants: tr|I3SKD9|I3SKD9_LOTJA Chalcone-flavonone isomerase family protein; Found in the gene: LotjaGi5g1v0359230
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:67390287..67391829) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGCCAGTAAAAGGACCCCTCACCCCAATCCAGGTTGAGAACCTTCAATTTCCGGCGTCGATTACCTCTCCGGCCAC CGCCAAGTCTTATTTCCTTGGTGGCGCAGGTAATTCTAACAAACATGCACATAGACACATATATAATTTATACATGTATA AATAAAATCAATTTTAACATCAAGAAACTACTCACATAATTAGTTCTTGTTCAGGATTTTGTAATTGAGGTTATTTAAAT GACCTATGAGAAAGTTTTGGGTTAAATAACACATCATCTAATTGTATTGGAGATAAGTGAGTTGTAAATAAATTAATAAA TAAAATATATAAATTTCAACTCACTTATCTTCAATGTGATTGGATGATGAGTTATTTAACCTAAACTTTCTCATAGGCCA TTTATACAACCCGCCCCTTTGTAATTAATTAATTATAGAAGAATTCTCAAACATTCACCCATGATTATACATGTTAAATT GTTAATTAATTGTTGGTATTTGAATTAATGTGTAGGGGAGAGGGGTTTGACGATTGAGGGGAAGTTCATAAAATTCACAG GCTTAGGAGTGTATTTGGAAGATAAAACAGTGGATTCACTCGCCACCAAGTGGAAGGGCAAGAGCTCACAGGAGTTGCTG GACTCCCTTGACTTCTACAGAGACATCATTTCAAGTATGTATTAATTCTTCACACCCTCACACTATTTTTAGTTGTTGTT TTGCTCTTTAAGACATGATAGATACAAGGTAAATAATGATGGTAAATTAAAATCACAGCAGACAAAAGCAATATCTCTTA TCTTTTAATTTACAATTGTTCACTGAGATTTTAGTTTCAATGTAGTTTTACAGGGTGTGCACATATACTAATTTACAAAA AGAATTAACCCCAAAACTTTCAACATACATGCATGCACTTGTTTTTTTCTCAAAGTAGAATTAAAGTAGGATTTCATCAT GTTTAAAGGTTCTAAAGTATGGTTTAATCTGCAGGCCCCTCTGAGAAGTTGATTCGAGGGTCGAAGTTGAGGCCATTGAG TGGTGTGGAGTATTCAAGAAAGGTGATGGAGAATTGTGTGGCACACATGAAGTCTACTGGAACTTACGGTGAAGCAGAGG CTGCAGCCATTGGGAAATTCGCAGAAGCCTTCAGGAATCTGGATTTTCCACCAGGTTCCTCTGTTTTCTACAGGCAATCA CCCGATGGAGAATTAGGGGTTAGTAACGACTTTTAACTAGTATTTTAGACTTTAGTTCGTACAATATATACACGGGAAAA ACATTTGTTATAATATGCTTAGCTAATATAATTGTTTCTTGTCTTTGTGTTGTTTGTTGTTTTTAAAAATCACACAGCTC AGTTTCTCTCCAGATGATACTTTACCAGAAAAAGAAGCTGTGGTCATAGAGAACAAGGCACTCTCAGAGGCAGTGTTGGA GACGATGATTGGCGAGCACGCTGTTTCCCCTGATTTGAAGCGTTGTTTGGCTGAAAGGTTGCCTGCTGTGCTGAACCAAG GTCTTCTCCTCAGTGGAAACTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0359230.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGCCAGTAAAAGGACCCCTCACCCCAATCCAGGTTGAGAACCTTCAATTTCCGGCGTCGATTACCTCTCCGGCCAC CGCCAAGTCTTATTTCCTTGGTGGCGCAGGGGAGAGGGGTTTGACGATTGAGGGGAAGTTCATAAAATTCACAGGCTTAG GAGTGTATTTGGAAGATAAAACAGTGGATTCACTCGCCACCAAGTGGAAGGGCAAGAGCTCACAGGAGTTGCTGGACTCC CTTGACTTCTACAGAGACATCATTTCAAGCCCCTCTGAGAAGTTGATTCGAGGGTCGAAGTTGAGGCCATTGAGTGGTGT GGAGTATTCAAGAAAGGTGATGGAGAATTGTGTGGCACACATGAAGTCTACTGGAACTTACGGTGAAGCAGAGGCTGCAG CCATTGGGAAATTCGCAGAAGCCTTCAGGAATCTGGATTTTCCACCAGGTTCCTCTGTTTTCTACAGGCAATCACCCGAT GGAGAATTAGGGCTCAGTTTCTCTCCAGATGATACTTTACCAGAAAAAGAAGCTGTGGTCATAGAGAACAAGGCACTCTC AGAGGCAGTGTTGGAGACGATGATTGGCGAGCACGCTGTTTCCCCTGATTTGAAGCGTTGTTTGGCTGAAAGGTTGCCTG CTGTGCTGAACCAAGGTCTTCTCCTCAGTGGAAACTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0359230.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPVKGPLTPIQVENLQFPASITSPATAKSYFLGGAGERGLTIEGKFIKFTGLGVYLEDKTVDSLATKWKGKSSQELLDS LDFYRDIISSPSEKLIRGSKLRPLSGVEYSRKVMENCVAHMKSTGTYGEAEAAAIGKFAEAFRNLDFPPGSSVFYRQSPD GELGLSFSPDDTLPEKEAVVIENKALSEAVLETMIGEHAVSPDLKRCLAERLPAVLNQGLLLSGN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR28039
8 221 214 8.6E-120 –
PANTHER
PTHR28039:SF10
8 221 214 8.6E-120 –
SUPERFAMILY
SSF54626
9 217 209 2.48E-76
IPR036298
Pfam
PF02431
13 214 202 5.0E-96
IPR016087
Gene3D
G3DSA:3.50.70.10
13 194 182 6.5E-80
IPR016088
Gene3D
G3DSA:1.10.890.20
61 214 154 6.5E-80
IPR016089

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016872
Molecular function Intramolecular lyase activity The catalysis of certain rearrangements of a molecule to break or form a ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0359230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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