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LotjaGi5g1v0359350.1

Overview

Field Value
Gene ID LotjaGi5g1v0359350
Transcript ID LotjaGi5g1v0359350.1
Lotus japonicus genome version Gifu v1.2
Description Chalcone-flavonone isomerase family protein; TAIR: AT3G55120.1 Chalcone-flavanone isomerase family protein; Swiss-Prot: sp|Q8H0G1|CFI2_LOTJA Chalcone--flavonone isomerase 2; TrEMBL-Plants: tr|I3T2D9|I3T2D9_LOTJA Chalcone-flavonone isomerase family protein; Found in the gene: LotjaGi5g1v0359350
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:67402703..67404660) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCACTACCGTCGGTCACCGCTCTGCAGGTGGAGAACGTTGCTTTCCCTCCCACCTTGATCAAACCTCCGGCCTCCGC AAACACCCTCTTCCTCGGCGGCGCTGGCGAGAGGGGATTGCACATTCAGGACAAGTTCGTCAAGTTCACCGCTATTGGTA TTTACTTGCAGGATACCGCCGTTCCCTCACTCGCCGTTAAGTGGAAGGGTAAGCCTGTCGATGAGTTAACGGAATCCGTC CAATTCTTCAGGGATATCGTTACAGGTCAGTTCCTCTCCGATTTGGACCGTCCAAAATATATTAACAGAAAAAAAATTGA ACGGTCCTGATCTATTTTCAATTTCTATGTAATAAGAGATGTTAATGGAAAAAACTCATTAGCTAGCTAGTAGCTACTTA GTGCGCTGATAGTGAAGCGACAACCGTTAGCTCTGGGAATACCTAGTTAGCGCTATTATGACTAGGAGCCTTATGTAGAC CTGAGAGAGAGTACTTATTAGAGTTTATCTAGCGAATGTTTTTAGTAGAGAAGCTCTAATAAGTGCTCTTTGCTCCGTAT CTAAATGTAATCTAGCTTATGTAGGAAAGAGATTGTAGCTTGTGAATTTCAATGGAAATCATGCATATGCAGCAAGCAGA AGATCTAGATGTTAGAAATAGTGTAAATTGTAAAAGACGAAAAGTTGATCAAATATACATGAGATGAGGCCCAAATATTT GACTTCATTTTATAATTTTAGTTGAATACTTGCTTGCAGGTCCATTTGAGAAATTTATGCAGGTGACGATGATCTTGCCA TTGACGGGCCAACAATACTCGGAGAAAGTGTCTGAGAATTGTGTGGCTATTTGGAAGCATCTTGGCATTTACACTGATGA AGAAGGCAAAGCAATAGACAAGTTTGTTTCCGTTTTCAAAGACCAAACGTTCCCACCAGGCTCCTCTATCCTCTTCACAG TGTTGCCTAAAGGATCATTAGCGGTTAGTAATGCCAATTTATGCAATTTTATCTTCTCTCTATTGTCGTTCAAGATCCCT TTGTTGCAACTTAGCCAAAATATATAAAACTAGACCAATTGCATACATTGAAAAGTTTGGGGTGAGCATATATAAACCTG TAAAAAACTGGCAATTAACTGGGTTAGCCTTTCACGGTGTGTGTTTGGATTTCCGCTGAACTTCACGTGGAAAAATCCTG CTTTTCCAATCCATGTTTAACTCAGCATGACAATTTGTTGATACCTTGAGATACTTGAAATCACGTTAGAGCAACTTCAA CCGCAGTGGACCAACCATTGTTCCACACATCCTTTACTCATTTATGTGGATAAAATCACCTTTTGACAAAGCATTATTCA CCTCTCCCTAGGATGTTCTGCCACTGGTAGTTGCTATGATGCAGACATGTGATAGGATCTGGACCCGTAGACAATCCTTG TCATGTCTCATTAACTAAAGATGTTTAGCAATCAACTACTATGGTTAGTCCCAAAATCAATTTTGCAGAGAAGCTATAGA GAGTATATTCGCAACATTATACTCTAGAACATCAATTATGACGATAGTGATCCGAACATGCAAGATATCACGGTGAAACT AAACTAAAATCATAGTGAACCGCCACATAAGTTAAGAAAAGTTGCTTTTGTACATCGTGATTTTTCAACTTTATCCAAAC ATACACTAAATCACTTTTTGAATAGTTTGTTCTTTTTAGAAATATACGGTACCTTGTTTTCAAATTTTTAGTTATAAATT TGTTTTCTTGATTGCCAACAGATAAGTTTCTCTAAAGATGGATCCATTCCAGAAGTTGAGTCTGCAGTTATAGATAATAA ACTGCTTTCAGAGGCTGTGCTGGAGTCAATGATTGGTGCACATGGCGTTTCCCCTGCAGCAAAACAGAGCTTAGCTTCAA GATTATCTGAGCTATTCAAACACCATGCGGAAGTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0359350.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCACTACCGTCGGTCACCGCTCTGCAGGTGGAGAACGTTGCTTTCCCTCCCACCTTGATCAAACCTCCGGCCTCCGC AAACACCCTCTTCCTCGGCGGCGCTGGCGAGAGGGGATTGCACATTCAGGACAAGTTCGTCAAGTTCACCGCTATTGGTA TTTACTTGCAGGATACCGCCGTTCCCTCACTCGCCGTTAAGTGGAAGGGTAAGCCTGTCGATGAGTTAACGGAATCCGTC CAATTCTTCAGGGATATCGTTACAGGTCCATTTGAGAAATTTATGCAGGTGACGATGATCTTGCCATTGACGGGCCAACA ATACTCGGAGAAAGTGTCTGAGAATTGTGTGGCTATTTGGAAGCATCTTGGCATTTACACTGATGAAGAAGGCAAAGCAA TAGACAAGTTTGTTTCCGTTTTCAAAGACCAAACGTTCCCACCAGGCTCCTCTATCCTCTTCACAGTGTTGCCTAAAGGA TCATTAGCGATAAGTTTCTCTAAAGATGGATCCATTCCAGAAGTTGAGTCTGCAGTTATAGATAATAAACTGCTTTCAGA GGCTGTGCTGGAGTCAATGATTGGTGCACATGGCGTTTCCCCTGCAGCAAAACAGAGCTTAGCTTCAAGATTATCTGAGC TATTCAAACACCATGCGGAAGTTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0359350.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALPSVTALQVENVAFPPTLIKPPASANTLFLGGAGERGLHIQDKFVKFTAIGIYLQDTAVPSLAVKWKGKPVDELTESV QFFRDIVTGPFEKFMQVTMILPLTGQQYSEKVSENCVAIWKHLGIYTDEEGKAIDKFVSVFKDQTFPPGSSILFTVLPKG SLAISFSKDGSIPEVESAVIDNKLLSEAVLESMIGAHGVSPAAKQSLASRLSELFKHHAEV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR28039:SF8
2 219 218 9.8E-116 –
PANTHER
PTHR28039
2 219 218 9.8E-116 –
SUPERFAMILY
SSF54626
5 216 212 1.57E-84
IPR036298
Pfam
PF02431
11 214 204 1.1E-103
IPR016087
Gene3D
G3DSA:3.50.70.10
11 193 183 1.3E-89
IPR016088
Gene3D
G3DSA:1.10.890.20
60 214 155 1.3E-89
IPR016089

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016872
Molecular function Intramolecular lyase activity The catalysis of certain rearrangements of a molecule to break or form a ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0359350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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