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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0360900 |
| Transcript ID | LotjaGi5g1v0360900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein trichome birefringence; TAIR: AT3G12060.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q9LHL6|TBL1_ARATH Protein trichome birefringence-like 1; TrEMBL-Plants: tr|K7N5E5|K7N5E5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0360900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67511279..67514009) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATTCCTCCGTCTCCTCCTTTCTTCTCTCATTTCTAACTTGAATCACACTAGTCTTCTCTCTTCTCTTCCCTTGCTC TCTCCAAAAATAGCACAACAACATCGTTTCTCCCATAATTTTCCTTTTGCTCCATCCCATGATCTTCTTGTGTTTGCAGA AAGAACAAACAAGTTATGTTTTAAAAGCCAAAAACAGAGTATTACAGAAAATAGAGCATTATATCTTAGTGGCACCGTTC ACTGACAAGATCAGATTCAATGCGCTTCCCTGTTTCATTAGCTTCTGTTTTCCTATTTTCTCCTTGTTTGTTCATGCTGT TCCTCATTCTGAATCCTTCTAGCTACCAAAGATACAATCCTTCTACCACTAATGCCAGCACTATTCATGAAATTTCACGT GAAGAAGAAGAAATTTCCTCTGTAGTGAATGAAGATGTATATGCCAGTGTCAGTTCTAAGCATGGTGCAGAAAATGATCA TGGGGTTGGGGATTCTAGTTCTTCCTCTCATAAAACAGGTTTTTCACAAAATGGTGCGCACTCATCAGATGATAGAACAA AACCAGATGATGGGGTTGTGAAAAAGGAAGGTTCTCTGCTCACACCAAAACCAAGTGATAGAACAAAACCGCCAAAAAAA AAGCCTCTTCTTACCTCACCAAATGCTAGAAAGGGTACACGAAATGTGAAGCGGAGTCAACATGGGAAGAAGCGCTTGAG GAAGAAAAGGAAGACAAAGTGTGATGTGTTTGAAGGGTCATGGGTTAGAGATGATTCATATCCACTTTACAAAGCAGGGT CATGTCCCCATATTGATGAGCCTTTCGACTGTTTTGTCAATGGAAGGAGTGATAATTTGTATGAGAAGTTCCGTTGGCAG CCCAAAAATTGCAAATTGCCAAGGTACTTTCTGATGAATTCACAGTATATGTAGGAAGCAACAAAACGGTTGAAAGTATG AGAAGGTAGCTATTATCCCAGTTTCATATTTCTAGACTTCAGTTATAGCTAGTTATGTATGTTTCTTCTACTTGTAGCTA TGAGAAGATTGAGAGAGATGAATTATGTTTTTGTCTTGTTGTACCTTTTGGTTGTAATTCTAGTGAGATGAACATGTGCA GGTTAAATGCTAGCAACATGTTGGAAATGCTGAGAGGAAAACGTGTAGCCTTTGTTGGTGATTCCCTCAATAGGAATATG TGGGAATCTCTGGTTTGTATTCTTGGAAATTCAGTGGAAGATAAGAGCAGAATGTTTGAAGCTTCTGGTAGAGAAGAGTT TCGGACAGAGGATTCTTACTCATTTATCTTCAAAGTATGTGATATGTTAAGAAATTAATTGTAGCCTTTTGTTTGGATGG GTTGAGCTTCAATTTCTAAGAGCTAGAATAATGTTAGTGATCAGGTTGATACTAAGTGCTACTTTGTTAATGTCTGAACA GGATTACAATTGTTCAATTGAGTTCTTCCGTTCACCGTTTCTTGTTCAAGAGTGGAGGATTCCAGACCAGAAAGGATCAG CTACAGAAATACTTCGTCTTGACTTGGTTGAGAGATCTTGTGATAAGTACAAAAATGCTGATGTTGTGATCTTCAACACA GGTCACTGGTGGACTCATGATAAAACAAATGGAGGGTAATGCTGCTTTTTTGGTGTTGCATTTCTAGTTCCCCAGATATC TTTTTAATTAAAATTATGAAAATTTGGAGGTTGGAATGTGGAAGATTTAGATGACAATGTTTTAAGCAACCTTGCAGGAA GGAATACTATCAAGAAGGAGATCATATCCTTGGACAATTGAATGTTGAGAAGGCATTTCATAAAGCTTTGTTGACATGGG CAAAGTGGGTGGATACTAATATTGATCCTCAGAAAACTATAGTTGTCTTTAGGGCTTTTGCTCCTGCTCACTTCACGTAA GCATTTTGTTTAGTAAATGCTTTGGATTTCACACACTATATAGGTCTCATTTGAAAGAACTTTTTTGAACTTATCTTATA ATATAAATATTTATGCACAAAGCTGCTTATGTAAATAGTTTATGACCTATCTACCTATTGTCTAAGCTAATTTTTATAAA TTGCTCATATTAGCTTATGAATAAGCAATTATACATACGTATAACATATTTTGAGCTTATTTTATTAAGCTTTTCAATAG GTTTATAATTTCCATAAGCACTTGATTAAAATGTATATGTTTACTGAAACATATTCATAATCATCTTTTTTTGCTACAGG GGTGGAGAGTGGAACTCAGGTGGTCAGTGTGACAATGAGAGAGAACCCATGAAAAATGAGTCTAATTTATCAGAAAATCC TCCAATGATGAGGACCATAGAGTCAGTAGTTAAGAGCATGAAAATTCCAGTCTTCTACTTGAACATCACCAAAATGACTG ATTTACGGCATGATGCTCACCCTTCCTTGTACAGACACATGAATATGACAGAAGAGTCAAAAAAATATATGCTCACACAC CAGGATTGTAGCCATTGGTGTCTTCCTGGTGTTCCTGACTTGTGGAATGAAATAGTGTATGCTCACCTTTTACATAGCAT GAAAAGAAACAAGGGCAAACCCCAAAAATAATTTTTGATTCATTGATGAAGCGTACATAATAGTAGCATAGAGTTCATAT TATTTTTGTGATTTAATCAGTTCATAGATTTGGATAACCAGGTTGTGTAATTATTTCAATCTTCATTACGAAAAAAAATA AAACATGTTCG
CDS sequence (LotjaGi5g1v0360900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCTTCCCTGTTTCATTAGCTTCTGTTTTCCTATTTTCTCCTTGTTTGTTCATGCTGTTCCTCATTCTGAATCCTTC TAGCTACCAAAGATACAATCCTTCTACCACTAATGCCAGCACTATTCATGAAATTTCACGTGAAGAAGAAGAAATTTCCT CTGTAGTGAATGAAGATGTATATGCCAGTGTCAGTTCTAAGCATGGTGCAGAAAATGATCATGGGGTTGGGGATTCTAGT TCTTCCTCTCATAAAACAGGTTTTTCACAAAATGGTGCGCACTCATCAGATGATAGAACAAAACCAGATGATGGGGTTGT GAAAAAGGAAGGTTCTCTGCTCACACCAAAACCAAGTGATAGAACAAAACCGCCAAAAAAAAAGCCTCTTCTTACCTCAC CAAATGCTAGAAAGGGTACACGAAATGTGAAGCGGAGTCAACATGGGAAGAAGCGCTTGAGGAAGAAAAGGAAGACAAAG TGTGATGTGTTTGAAGGGTCATGGGTTAGAGATGATTCATATCCACTTTACAAAGCAGGGTCATGTCCCCATATTGATGA GCCTTTCGACTGTTTTGTCAATGGAAGGAGTGATAATTTGTATGAGAAGTTCCGTTGGCAGCCCAAAAATTGCAAATTGC CAAGGTTAAATGCTAGCAACATGTTGGAAATGCTGAGAGGAAAACGTGTAGCCTTTGTTGGTGATTCCCTCAATAGGAAT ATGTGGGAATCTCTGGTTTGTATTCTTGGAAATTCAGTGGAAGATAAGAGCAGAATGTTTGAAGCTTCTGGTAGAGAAGA GTTTCGGACAGAGGATTCTTACTCATTTATCTTCAAAGATTACAATTGTTCAATTGAGTTCTTCCGTTCACCGTTTCTTG TTCAAGAGTGGAGGATTCCAGACCAGAAAGGATCAGCTACAGAAATACTTCGTCTTGACTTGGTTGAGAGATCTTGTGAT AAGTACAAAAATGCTGATGTTGTGATCTTCAACACAGGTCACTGGTGGACTCATGATAAAACAAATGGAGGGAAGGAATA CTATCAAGAAGGAGATCATATCCTTGGACAATTGAATGTTGAGAAGGCATTTCATAAAGCTTTGTTGACATGGGCAAAGT GGGTGGATACTAATATTGATCCTCAGAAAACTATAGTTGTCTTTAGGGCTTTTGCTCCTGCTCACTTCACGGGTGGAGAG TGGAACTCAGGTGGTCAGTGTGACAATGAGAGAGAACCCATGAAAAATGAGTCTAATTTATCAGAAAATCCTCCAATGAT GAGGACCATAGAGTCAGTAGTTAAGAGCATGAAAATTCCAGTCTTCTACTTGAACATCACCAAAATGACTGATTTACGGC ATGATGCTCACCCTTCCTTGTACAGACACATGAATATGACAGAAGAGTCAAAAAAATATATGCTCACACACCAGGATTGT AGCCATTGGTGTCTTCCTGGTGTTCCTGACTTGTGGAATGAAATAGTGTATGCTCACCTTTTACATAGCATGAAAAGAAA CAAGGGCAAACCCCAAAAATAA
Protein sequence (LotjaGi5g1v0360900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFPVSLASVFLFSPCLFMLFLILNPSSYQRYNPSTTNASTIHEISREEEEISSVVNEDVYASVSSKHGAENDHGVGDSS SSSHKTGFSQNGAHSSDDRTKPDDGVVKKEGSLLTPKPSDRTKPPKKKPLLTSPNARKGTRNVKRSQHGKKRLRKKRKTK CDVFEGSWVRDDSYPLYKAGSCPHIDEPFDCFVNGRSDNLYEKFRWQPKNCKLPRLNASNMLEMLRGKRVAFVGDSLNRN MWESLVCILGNSVEDKSRMFEASGREEFRTEDSYSFIFKDYNCSIEFFRSPFLVQEWRIPDQKGSATEILRLDLVERSCD KYKNADVVIFNTGHWWTHDKTNGGKEYYQEGDHILGQLNVEKAFHKALLTWAKWVDTNIDPQKTIVVFRAFAPAHFTGGE WNSGGQCDNEREPMKNESNLSENPPMMRTIESVVKSMKIPVFYLNITKMTDLRHDAHPSLYRHMNMTEESKKYMLTHQDC SHWCLPGVPDLWNEIVYAHLLHSMKRNKGKPQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 5 | 505 | 501 | 7.4E-226 | ||
| PANTHER | 5 | 505 | 501 | 7.4E-226 | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 7 | 22 | 16 | - | – | |
| Phobius | 23 | 26 | 4 | - | – | |
| Phobius | 27 | 513 | 487 | - | – | |
| MobiDBLite | 66 | 158 | 93 | - | – | |
| MobiDBLite | 75 | 95 | 21 | - | – | |
| MobiDBLite | 96 | 127 | 32 | - | – | |
| MobiDBLite | 141 | 158 | 18 | - | – | |
| Pfam | 160 | 212 | 53 | 4.4E-21 | ||
| Pfam | 213 | 499 | 287 | 1.1E-97 | ||
| MobiDBLite | 402 | 424 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0360900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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