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LotjaGi5g1v0361100.1

Overview

Field Value
Gene ID LotjaGi5g1v0361100
Transcript ID LotjaGi5g1v0361100.1
Lotus japonicus genome version Gifu v1.2
Description Chaperone protein dnaJ; TAIR: AT2G34860.1 DnaJ/Hsp40 cysteine-rich domain superfamily protein; Swiss-Prot: sp|O64750|EDA3_ARATH Protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic; TrEMBL-Plants: tr|I3SKJ0|I3SKJ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0361100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:67521940..67525015) extracted from Lotus japonicus Gifu genome v1.2.

ATTGAGAGTGAGAACAGGACGTACGTGGAGGGCACCGGACCTATCCACTCGATTTTCTTACTTTCTCTTCATCTTCTCCA GACTCCAGAGCAAGCAAGCAACACCCCATTGAATCGCAGTAGATAAGCTTGAATTCATGGCGTCTCTGATACCTCAATGC CTTCCTCCATCTGTAAACCGACGTAAGAACTACTTAATTAACACCTTCCTAACATTCTCTTCAATCATTTCATTATTCAA TCGTTCTTCTGTTCTGTTGTGTTGTTTTCAGAAAAGGTTCATGTTGTCAAGTCAAGTCACCAAAACGAGAGCTCTGCTTC AAACCACTCCCCAAAGGTGCACAAACACATCCTGCAACTTTTTATTTATTTATTTATTTATTTATTTATTTATTATTCAT TGATTTTAAATACAACTGTTGATAATGTAATGTAACTACTCGTAATTGAATGCTCTTAGCTCGTTTGGAGAGCTTATCTT ATAGAATGAAGAGGTTTTGTAAATAGCTTATGACCAATCTATAAGTTATTTTGAACTTATTTTCATAGGCGGTTAAGATT AACTTATGAATAAGAGCGTATGCTTATTTATAACTTATTTTCAGATTATTTTAAAAAGTTTATCACTGTCAAAGAAACAA AGAGCACCTTGGTTTATTGAGAAATGAGAATAAGCTATCAATGAAGCATAGCTATGATTTTTTGACTAATGAGCTCCGGT AAACATGTGCCATAAATTGTATATTATTTCACTAACATGTGCATAGCCAACATCTCCCAACCATAAATCTCAAAGTTATT CAAAGACTTGTTCCCTGATTGCTGTTTGGTAGTTTATGTGTGCAACGGCAAAATGTCAATTACCTACTGAAAGTTCATCC TCTCGTGCAGGAGCTCCGAGTAATACCAGTTTCCAGGCGTCAGTGTCTCACATGTTTATGTTCAACTCTAGCTTTGATTG GTGATTATGCCAGACCTGTTTCTGTACCGGAAGCAGCCGCTGCTGATGGGATGGAAAGACCAGGCTGCAGAAATTGCGGG GGAAGTGGGGCTGTGTTGTGTAAGTTCTGATAAAACTGCTTTCTTTGAGGTTGTCTCTTCTTCACTGCATGATTTCAAAT ATATGCTTAATAGTTCACACATAAATCTTCTGAGAAAAGAGTCGTATTAAAATTCCCATGATTATAAATCTTGGCAGTCC TTCTTTCCTTAAGAGGGTGAGCCTTCTTACTACTGTGAGGAATATTATAGTGATTCCCACAACTATTAGCAAATCAAATT ACTGAGATGATTTTATCATTAGAGAGCTTTGCTAGTGTATAATGCTTCAAGACTCCTGACTAAGTCCCCTGGTTAAATAA TACCGAATTAAACCAAGGCAGAGTAGAAAATATATAATGTGATTGATTTGTTAGTTCAGTTAAGAATAAGATTGTTTCCA TATAATATAATTCTTCATACCATGTTTGGAAAATTTTATCAATATGAAACCAGTAGATCTGACTTTTCATTTAGAGTATT TAAGAGAAGATAATTATTTACCAGCTCCTGTTTCTTACATGCTTTGATCCATATGATGTTTACTTTTCATGTAGGTGATA TGTGCGGTGGTACAGGAAAATGGAAAGCTCTAAACAGGAAGCGAGCAAAAGATGTTTATGAGTTTACAGAGTGTCCAAAT TGTTATGGTATGAGATTTAGCCTTTTATGACATGCTTTCCAAAGTGTTGTTATGCAATACAGTTGTTTTTTTTATAGAAT TGATGGCTCCAAATTCATTTTTCTTAGTTAAGTATGCCAATTACACCTCTTATTGTTCTTTTGAACACGAACACTTCTTT GTTTGTTGCTCTTGTACTGTGTTATGACGTTTTTGAGTGGACGGTAAGGGAGGGAAAGGAAAAGTAAGAGGGAGACTGAA ATGATCAGAATAAGGAAATGAGAGGAACTATCATCCTGTTCTATAGGGTTTCAAGTATAGGGATTGGCCTTTCCTCTCCT CAAACACCTATTAAACCAATGTGTGGTTCTCTTTTCTCATCTCTTCCCAACTACCTGTTTATAAGGTTTAAAATTGCAAT TGCGTTTTATCACAGACTTTAAACAGAAAATTGAGGACAAATGCAGGCGATGAGCTCGCGATAAAGTTGCAGTGAGCCAT AAAAAACTTTGACAATGCAACCACAATATTTAACTTTTCCTGTTTACCTTATCGAAAAATAGCCTTTTTAGTATTTCCAT CTGCAACTAACATTCATAAATTACAGGTCGAGGGAAGCTTGTCTGCCCTGTTTGTTTAGGAACTGGTGTGCCGAACAATA AAGGTCTTCTGAGGAGGCCTGATGCCCAGAAACTGCTTGATAAGATGTATAATGGAAGGCTACTTCCCAACTCTTAGATA GTAGGTATGTTTTCTTTTATTATGCTACTCCATAGTCCATAAAGTTACTGGTGCCTAGAATATTGATCTTGTATTGCCAT TATTCACTGTACAAGATCCTTTTCAGTCATACGTGTGACGGTGTGAGCACAACTGAGGCTTGCTCTTACTGCATTTTGGC ACATGACTGGAATGTTCAATAGTTAACAAAGCCAATGGCTGCAATGGTAATCGACTAGCACAGAGAACATGCGGAAGATT TTCTTGCTTATATTTTTTAGTCTGGATGCTTTCCAGAGCACCAACAACTATTGGCTTGGTTATCACGAAATGACTTCCAT GGTTCTATATGAAAAAAGTCCATTTTTCAATGCTACAGTCGTCTTATTCATGCAGACCGAATCAACTTCCAAAATGCCTT GTATTGAAGATATTGGGCAAGTACTTTCTGCAAGAGTTGCTATTTAAGCTCCTAATTAGTAATTAGTTACCATTTACCAA GTAAATTTACATATGTTCTTACAACTCACTGTGTAATAAGCCAATTCGAGCTATTTGAAATTCATTATTTTTAATTTCAA AACAAAAATCATTATTTTAAATAATTAAACATGATGAATGCTTTGTTTGCTGATCTTCTCTGGCTTGTGACGATGGCAGT AAACGAGCCCGAGATTTTTTGTTTATTGCGTTAGAG 

CDS sequence (LotjaGi5g1v0361100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCTCTGATACCTCAATGCCTTCCTCCATCTGTAAACCGACAAAAGGTTCATGTTGTCAAGTCAAGTCACCAAAA CGAGAGCTCTGCTTCAAACCACTCCCCAAAGGAGCTCCGAGTAATACCAGTTTCCAGGCGTCAGTGTCTCACATGTTTAT GTTCAACTCTAGCTTTGATTGGTGATTATGCCAGACCTGTTTCTGTACCGGAAGCAGCCGCTGCTGATGGGATGGAAAGA CCAGGCTGCAGAAATTGCGGGGGAAGTGGGGCTGTGTTGTGTGATATGTGCGGTGGTACAGGAAAATGGAAAGCTCTAAA CAGGAAGCGAGCAAAAGATGTTTATGAGTTTACAGAGTGTCCAAATTGTTATGGTCGAGGGAAGCTTGTCTGCCCTGTTT GTTTAGGAACTGGTGTGCCGAACAATAAAGGTCTTCTGAGGAGGCCTGATGCCCAGAAACTGCTTGATAAGATGTATAAT GGAAGGCTACTTCCCAACTCTTAG 

Protein sequence (LotjaGi5g1v0361100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLIPQCLPPSVNRQKVHVVKSSHQNESSASNHSPKELRVIPVSRRQCLTCLCSTLALIGDYARPVSVPEAAAADGMER PGCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGVPNNKGLLRRPDAQKLLDKMYN GRLLPNS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 16 167 152 1.1E-77
PANTHER 16 167 152 1.1E-77
SUPERFAMILY 82 139 58 8.11E-9

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0361100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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