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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0000800 |
| Transcript ID | LotjaGi6g1v0000800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAD(P)H dehydrogenase 18; TAIR: AT5G43750.1 NAD(P)H dehydrogenase 18; Swiss-Prot: sp|Q9FG89|PNSB5_ARATH Photosynthetic NDH subunit of subcomplex B 5, chloroplastic; TrEMBL-Plants: tr|I3SQB7|I3SQB7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0000800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:350888..352882) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATGTTTTGAACCCCACCAAATGAACGAGAGCCTTTCCAACAGCTAATTTTTCTCTCTCGCGGAAGCTCTGATATCT GTCAATTAAGTAGATAAAAATTCATGGGTCACTAGTATCTGTAAACGGATGAGATAGCCAAAAACAACCACCACTCTTTG AATGGCGCTTTGTTCATCACTCTCGTTACTCCCTCCCATCACTTCCCAGCCCAAACTCACTTCCACCAAATCCTTCTCAT CTCCAATACCACCCAACTTGCATGGCCTCTTGACCAAGACTAACAGGTTCTCTTTGAAAGCTGGTTTTAATGAGATTGAG CCTGACCTCAACGAAGATCCTAGGGATCAGTTTGCCCTTAACAGCATTGACTCTGTACATTCTTATACTTTAATCTCTCC TTTTATATTTTTTTTGTTATTTATGAGTTTCGTTTCTTTTCAGGAAGATTTCGAGTATGGAATTTTCGATGGACATCACA CTTACTATGAAGGAGAACATGAGAAAGGTATTTGTTTGCTCACTCTCACAGTATCACTAATGCCTACTTCCTTAATTTCA TTTTTTTTTGTATCACTTTTGTTTTTCTAATTGATATTGGAGGAGGTAATTCTCATGGTTAATTGAGATACTAGGAGGAT GTTGGCTTTCCCATGATTTATTCAGAGTTCAACCGAGCCGAAATTTTAAACATTATATTAGAGACTATTTTAGATCTATT CATTGGAGACCATCCATAAATAAGAGGTGTTGTGACTGCTGTCCTACAAACTTCACATTTCATATGTTGAGTTCAGGACC TAAGAGAGTGTGTAAAGTAGAACAATCCTTACTCTTAGAGCTAGCTGACTTTTAACATTTGAACCTGAATTGGTAAACAC GTTACAGATGATATTTTTAATTTATGGAAATCATTAAATTTTTGTTTGCTTTTCTTTGGTATAAAATCTGATAGCACTTT GTTTAATTCATTAAAGATAGAATCTTCTGCTGATTGTATTCCCAAATTATGAGGAAAGGAAAGATGTTCCTGACTAAGTG CATCTGTTTTCCTGACAAAGTTCCTAATGAATATGCATTTCAGGAACATTTTGGGGTTCTATTGCAGAAGATATAGCAGC AACAGAGCCCCCCACAGGATTCCAGGGTGTGCTTTCCCCACACTATTCATCATTTACTCATTTTTATTACAATTGTCAAT TTTGACCATCGTTTGCTTCTTATTTTCACCCTTGTGTAGGGATTATTTCATGGCTCTTCCCACCAGCTATCGCTGCTGGG GTGTTCTTCGATGTTCCGGTAACTCTGAATATCAATTGCCATTAATGAAGAAGGATCATTATACAAATTATCACTTGGCG ATTTTGCTTGGATATAAACAGTGCATATAACACATTCTAAGTTTACAATCCCAAATCCTAATTTTTAGCTGTTTTTCAGG GGGAGTACTTGTACATTGCAGCAGGCATATTTACAATTGTATTTTGCGTTATTGAGATGGATAAACCTGATAAACCTCAC CACTTTGAACCTCAAATATACAACATGGAGAGGGGATCTCGAGACAAGTTGATAAGTGACTACAACACCATGAGCATATG GGATTTCAATGAAAAATATGGGGACATTTGGGATTTTACAATCAAGAAGGATGACATAATCACCAGATAGTTCTTTAGAA CATATGCCATTTGATGTCAATTCTTGAATATAATGATTCATCAATATTAAGGCCACCCTTTTAAGTTTGTTATGTTGTTT TCACTGTATACTTTTCCCTCTTTTATGTTAATGTTGGATCAAAAGGTGTATATTCCCTCTTCTTATTTGTCATTAAACAA ACAGAAAAATGTAACATCCTAGTCAAAATTCTTGTGATTAAAGACTTCGCGACTAGTGAGTTATCATATCTCAGGCATTT ACCTAAGTTATTATCTTATCACTCTTTTTGTATGTCCGAAATGCCACATAGAATAAAGAGTTACTTGATCCCTGG
CDS sequence (LotjaGi6g1v0000800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTTTGTTCATCACTCTCGTTACTCCCTCCCATCACTTCCCAGCCCAAACTCACTTCCACCAAATCCTTCTCATC TCCAATACCACCCAACTTGCATGGCCTCTTGACCAAGACTAACAGGTTCTCTTTGAAAGCTGGTTTTAATGAGATTGAGC CTGACCTCAACGAAGATCCTAGGGATCAGTTTGCCCTTAACAGCATTGACTCTGAAGATTTCGAGTATGGAATTTTCGAT GGACATCACACTTACTATGAAGGAGAACATGAGAAAGGAACATTTTGGGGTTCTATTGCAGAAGATATAGCAGCAACAGA GCCCCCCACAGGATTCCAGGGGATTATTTCATGGCTCTTCCCACCAGCTATCGCTGCTGGGGTGTTCTTCGATGTTCCGG GGGAGTACTTGTACATTGCAGCAGGCATATTTACAATTGTATTTTGCGTTATTGAGATGGATAAACCTGATAAACCTCAC CACTTTGAACCTCAAATATACAACATGGAGAGGGGATCTCGAGACAAGTTGATAAGTGACTACAACACCATGAGCATATG GGATTTCAATGAAAAATATGGGGACATTTGGGATTTTACAATCAAGAAGGATGACATAATCACCAGATAG
Protein sequence (LotjaGi6g1v0000800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALCSSLSLLPPITSQPKLTSTKSFSSPIPPNLHGLLTKTNRFSLKAGFNEIEPDLNEDPRDQFALNSIDSEDFEYGIFD GHHTYYEGEHEKGTFWGSIAEDIAATEPPTGFQGIISWLFPPAIAAGVFFDVPGEYLYIAAGIFTIVFCVIEMDKPDKPH HFEPQIYNMERGSRDKLISDYNTMSIWDFNEKYGDIWDFTIKKDDIITR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| Phobius | 16 | 209 | 194 | - | – | |
| PANTHER | 43 | 208 | 166 | 1.9E-99 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. | ||
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
Expression pattern of LotjaGi6g1v0000800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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