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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0002700 |
| Transcript ID | LotjaGi6g1v0002700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CCR4-NOT transcription complex subunit 11; TAIR: AT5G18420.1 CCR4-NOT transcription complex subunit; Swiss-Prot: sp|Q9UKZ1|CNO11_HUMAN CCR4-NOT transcription complex subunit 11; TrEMBL-Plants: tr|I1JB78|I1JB78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:634772..642470) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTATTCGGAGATTGAGTGGTGAAGAGTCAATGTCACTCTTCTCTCTCCTGAAAGCAGATCAGCGCCCAATCCATGA GATCCTCGCTGAATTCAACTCCACACTCTCTCGCAATCGCCATTTCACTCTCTGTTCCTACCTTCTCATGCTCCTCCAGG CAAGGAAACGCTCTCGAAATCTTTTCACATTTTTACATACATGTTATTGTACTACTGGAGATGATGATCATCATTGATCA TATTCATGGTGTTGTTATATGTTGTTTTATGTGCAGGACAATAAGGTTCTCACCACTACTGAACGATTGATAGCTTTTTC TCTGCTACTTGAGGCTTATTCATCTCAGAAACCTGCTTCCAATCCCTTCATAACCTTTATCATTAATGTAAGCTTTTTTA TTCCCCTGCTGCTACATGCTTTATCTAATTCTTACCAGTTAGATCATTTTTCATCGTTTGTCTAATTCTTAGAATTAGAG GGTAATTAGGTAAGTAAGAAGGAAATGTAGAGATGCAAAACGGAGGATTAGATTCATGTGAAAAACGAAGAAAGCCAAAC CGATGTGATAGGTACCCTCTGCAAGGCATGCTGCAACGTGGCTTCCTTTTTTTGGTTTCCCTAGGTATTCCCACAGCCGG CAGAAATAAGATTAACCCTCGAGACTCTGAGATCACATTAAGTGGGTAGCAACATGACTATTGATGGAAAACACCGGTCA ACTTACATTTCCGATGCATATCTACATAGAATATATAATTGCATTTCAAAATATTCATACCGAGCGAGAACATAGTTATT AGGCATCACTTTATGAACCTGTTACGCAATTTCATTTTGGTGCTGTGTGTTTGAATTTTGGAATAAAAATCTAATTAATG AAATTACAATCATGAAACAAACATAATTATGAAAGAAGACAAACATGTAGCTATTAATATGCAACAACTTGCAGCTGAAT AAATCTCGTGTTAAAATGGACTTAGGCAGAGAACAAAATCATACATTGAAATTGACGAAGATAATAAACAGAAATTATTG TGTTGATATTTGTGCTTGGGTAGAGGACACGAGATGAGAGGAGTGGTGACTCTCGGGCGGGAAAAATTGACAAGTTGCAT ATTGAGATGAAAAATATTCAGGCCGTATTGAAACCTCCCAAACTATTAGCCACCATATCAGAATCATACGTTTTTTAAAT GACTTAGATACTTAACAAGTAAGGGTGAAGTATCCATATTGGACAAGTATTTGATATGATAAATAAAGTAGGGTGGTCAA TAGCGTGTGATAGCAGTGCTATCTCAGCGGAGCGGCCACTGGTCGCTACTCGCTATTGATATGGCATTGTTTTTCATCTC TATACTGTTAAGTGTTTGTTTGGATACACTGTGGAAACCACGGTGAAGCCAAAATCACGCTGGACAGCCACCAAAGGCCA AAGTTAATGGAAATTGCTTCTGTCCTCCATGATTTTGACTTACCGTGTATCCAAACATCCTCTAAGTTAGCTTGTGCTAT TTTAATGTCTACATGTTTTATCATCTATTTTGAATGTTTCTAATGGATTTTTTGCAATGCTATTGTGTTATGTGACTGTT GAGATAAGAATGACTTCATGGTTACAGGCTTCCTGTGATGAAGGGTCCATAAAAGTTGAGAGGGCATTTATTCTACAACT ATTAGGTGTTGATAGCTCCAACAGTGGCAAAGAGGTTATATACTGTTTTATTGTGTCTGGAAAGCATCAGTGAGATACAT TGTTGACAATTTATTTATCCCCTGTAATTATGTCATTTCTGCTCAACTCAACCTATATCCTATTTATATAGTTAAACATC ATTTCTCACTATTTATTAGCTACAATTTCTTTGAACTCAGTTTGGGAATAGGAGATTTATAGACATTCGTACTGACATGT GCAAGTTTGATTTAATACTATTATTGGTGCTCTACAAGAGCTACTCTTAGTCAAATATGGAATAGGCAGAACGAGATTTA TGGAGATGTGATTTGTTTCCTGTATTTATTTGGAAGTAGAAATTTTAATCAGATGATGTATGATATAGGAAGAGTCATTT TCTGATGGTTTTTTTGTTGATTGCCTTATTCATACGAGAGTTCTGGTTTGGTTGTTCTCATATATTTTCTTTACAGCTTG TTTATTTTGTCTCTCTTATTTGTTTGTTGAAGTTCTTATCCTTGTTCGGTTGTTCCATCTGTTTTTCCTTCTTCCCTCCA AAAAGAGTATCATGATTAAAGCTATCCTCTTACTACTTATTAGTCGCTAAATTTTGTTTTAGGTTATAAAAATTTGTAAA TGGGATGTTCTTTTTTGGTTGAACATGTTCCTAACATGTTTTCAGTGTTAGATTCTGTTGCTTGTTTTACTTCAAGATGC ATTTAAATATACCGCACATGTCAGTCAACTATACATGGCATGATGCATTTGCTGTTAGTGTAAAATTGCTTCCTCTCTTT CTTGAGATGTTTATCTTCAGTGTTCTGTAATTTCTCACATGTTTTTGTTTTGCTGGAGGATTGCAGTTTCTTAAACAGTC TGCCTCAGATTATGTGCAAGGATTTGATCAGTCATTGCATGTAAGCTACATACAGATATGCAAAGTACCGATCCATATTA TATCCAATATTGTCCTTCTATAATATCTGACTTTCCTGACATGTATCCCTGCTTCTCAAATATTTTAGGATTTTCCTTTT CCTGCCTTGCATTATGTTGACTTCTATTCTTATATATCCTCACTGATTCCAGGAGTTTCCTCCACTAGACCAGTTGCAGC AACAGTTTTCTGATAAAGTTCATCCAAAACCATATCATTGTTTATTTAAAGATGGTTCTGTGAGAAACGTGGTCCCAGAC CCAGATGTTCCTCCAAGTTGTGATCCAGATTCATCAGAGTATGGCCTTGTACAGTGATTGACTAATTTATGAAGTTTTTA TTCATTTTTACTTTTTTTTCTCAATAGGTGCCCATAGGTATTTTAAAATGGCAATTCAAAATTTATATGCTGAACATTAT ATTAACGATCAATTTATAGGTTTGATTTACGACCTGGAGCAAAACCTAAACTTGGCACCGGAGATAAAGACGAGGCTGTT GTTGGGTTATTGTCAAATCTTTCGCTGGAAGGATTAAGTCCTCACTGGATCAGGCCTCTTCCACCAAGGCTCCCTATACT TGATGGGGAGGTACTGCATAGTTGTGTCTGCAATTTTTAATTCTTGAGGCTTAATTATTCAAACTATTTATGCTGAGAAA CCCTTTTCCAGCTAGTTTGGCTCAACCCTGACGACAATCATGAACTTATGTGGGACTATGGTATGTGCGTTGATACTAGC AGAGGGGCTGCAGTTAGGGACTTAATTGCAAAAGCTCTGAAGGGTGCTCTTGCACCTACTCAGCAAGAGGTAATTATTAT ATTATTGTTCTTTGATATAAGATTAAATTCTTCAAAATGAAGAGAAGAAAACATCAAAAGAGGAAAGATACCCAATCCCT GGGCATATCTCAACTCTCAAGGACATGTGCTTACACCAAGCAATCCAAACTTTTAATCTTTTCTCAAATAATTTGCTGAA CCTATGAAATATGCTCATAATATCATGTCACACTCCAACCAAATCAACCTAATTGTAGTGTGGATTTCATATTACCATAA AAATGTAGCCTCTTGTCAAAATCATAAAAAAAAATATGGCCCATGGACTTTGGGCAGACCAAGCATTCACTAAAATAGAC AGTGTATGCCTAATATGAAAGCTCTAAAATGAGGAATTCACTTTAGAGAGAAAAGTGATGCATCTCAACCATTACTGAAA GAAATTAAGGTAGTAGATCTTAGCAAAGCTATGTGCATATGCATGTAATACCAATTGTTGATTTTCTCTTCAGTTCTTGA AATTTCTTACTTATCCTATAACTTATGAGTTTGCATTAGAAGAGCTAAATTCATTTAAGCCATAAAGATACAGGAGCAGG ACAATGTGTCTAGAGACGAGGAACTGATTCTGAACACGAACCACACAATACACGATATTATTATGGAAAGAACCTTGTAA AAATGAGATTACGTGATGGGCCTCTGATTTGTCTGTAAGGATAAATTTCCCTCTGTAGTTGGGCTTTTAAGGAAAGATAA AAGTCCTACTGAGGGATACTTCTTGTATAATAGCATAGATGATCTGCTGTACAGATTCTTTGCTACAAATCACATTGCAT TGTGGAATTGGAAAGTGATATCTCTTACCTGTAGTCAGTTCTTAATTTGTCATATGGTGCTGAATTTTATTTTACTTTTT TGATAATCCAGCAAGTCCTGTTGGAGCTGGGAAATGATCCAAAGCTCGTATATCATTGTGGACTGACCCCAAGAAAGTTG CCAGTATGTGTTCTTGTAATCTTGTTAATGTAGCATTGAGCAATTCAAGTCTTGATTTTTGTTCTCACTAGTTTATTTCC TTGTATCAGGAACTGGTGGAAAACAATCCTCTGATTGCAGTTGATGTTCTCACTAAGTTGATAAATTCTCCTGAAATAGC AGAGTATGTGTTTGACCTCTACTACATATGTGTCCTTTATTTTATAAGCCACCCAAATGCTTTTGTTGTCTTTATTTCTA TTTACTTATTTATGGATACAGATACTTTACAGTACTTGTGAACATGGACATGAGTCTACACTCAATGGAAGTTGTGAACA GGCTTACAACTGCAGTTGAACTGCCGTCGGAATTCATTCACATGTACATAACTAACTGTATATCATCCTGTGTGAGCATT AAGGTACTTCACTGTGCCTTGTCCTGAGAGTATTTTATTTTATGTAAAACAAAAATATTTGTTTTTCACAAGAGTGTGTT TCTGTATTTAACAGTTATTCGCATTCTCTTCCATTCATATGTTGTAGATCATGTAGGGATATTGGATTGAGTTTATGTGT GATATTTCATTCATGTATGGAGGTGGCATTGCAAGCTCAAAGATAAGAAGATTATAGGGGAATTTGGAATGACAGAGGAA AATAAATTAAATAGTTTACCTTAAGGACGGATGTGAGGTCTGAAATTTGACAGAAACCACCAATTTATTTAACATCTTTC ACTACCAGAGAACTGCTTTGTAGATAGAACCTTGACTTAACCACAATATTCTTTGAACTGGACAGAAATGTGTCTTCATG AATAGATGTTGCATGCCTAATGCCTGCACATATAATTTTACCGTTTCTGAATTAGCTGCATGCCTGCCAGAGTGCTTTCT TTTTCAACAAGTCAAATTATCATTGAGGCAATGAACTGTGGTGTACAAGTGAGTGAATTGACATAATAAACCTTTATGTA ACCTGGTTGTTGGATTTTATTTACATGTTGCTTGATTAGATATTAAATGATTGCAATGGTGGTAGGTCCCCAAAAGAAGC TATGTAGTTCATTTTCTAAATAAAAATTGAGTTTTTCTATTACTTAATGTGGTATTTTATTTTATTCCTAAAATTTTTTG CAAGATCCTGTGGTCTAAATGTATTGAGGGCTCTTCCTTGTTTTCTTGCTGAACTTAAAGAGCTGAACATGTGTGGACTG TGGAGGGTTAAATAACCTGCCACCATTGTAATTTTAAGTTTGAACTTATTTTATGATATTTATAATTGTCTTGTAGAACT TCTTCATTCAACTGGATGAATAAGTTTCATCTCACAATCTGTTTCTTTCTAAGATGGGTTTATGATTTGCTATTTACTAT TGTGGATGTTTTTGTGCTGCAATACACTCGGTCATACATAACATATACACTGTTTAGCAGTGTATGCAATTCAAATGATG CGGCCATAGTAAAAGGCAAATTTAAAATAGTTTTTTTGTAACCTCCAGTCTCTCTGTACTATACATGATTGCTTTACTAT TGCGAATTTTCTATATTCATAATTTACATCTAAGCTTTCTACCTTTTCCTTCAGGATAAATACATGCAGAATAGGCTTGT CAGACTTGTTTGTGTCTTTCTGCAAAGCCTAATTCGGAATAACATTATCAATGGTGAGTTCATCCAGTTTTCTCTGAAGC CTGAAAACTGTTGTTCGTTAAGGCATTTTCAATTTTTGTGTCTAGACATCAATTTCATTTAAGTTAAGCAGAAAGCACAA TCCTTCTTGCTTGTGTGAAAATACCATATCACAAGCCTAATGGTTTAAGTATATCTCTTTTGTTTCTGTTTTTCCTTCCT TCCCTTCCTTGCTCTGTCTTTTGTTTTTCCCTTTGTATTTGGGTTCTAGCACCCCTTGTGCTAGTGATTAATACACTTTG CTTATAAAAAAAAATATATCACGTCTGTTATACAAAATTGATGAGGAAATAGAGGGGAATGTGAACCATAGGATTCAAAA TGGGGGATGAAATGCAGGAACGCTTCTTAGTGTGATTTCTGATAGAAAAGTTCCACTCAAGCTTGAAAGAAATTTACCAC AGGTATATGAGTTGCGCTGTTGTATTAGGCTGAATGCTGGGCTATTAAGCCAACAATAAAGTAAGATTAGTGTGATTGAG ATGAGTATGCAATGACAAGTAAGTGATTATACTAGAAAAAATAAGATGATGAGTTACTGAGAAAGCATCACAGAAAAATT TGGGGTAGCACCTAGTATCGTAAAATGATAGTCTTGCCTTCGGTTGTTTGAGCATGTATTGAGAAGGTCTGCAGAGCATA GTAACAAGGCTAGATTAGAAGGAAGATAGTTCAATTGTTATGGGTTGAGGGAGACCAAGTAAGCTATAAACTAAACAATT AGGAAGGATTTTGATTTAAGTGGTCGGTCATCAGATATGATTTGTGATACGATATTATGATGTTTGTTCTATGTAGCTCA CCCCACATAATAGAAAAATGCCTTGGTTTTTTGTTATTGTATCATGTATGTACTGCAGGTAACGTAGATGCACAGTTGCA TTCATTTTTGTTTTCATCATTATTATGTATTGGGGTAGATTATCATCGCCTATTAATTCAGTATGTCAATTGTAGTTCGA TACCTCACAAGCCAATTTGGACACTGTCAAATGTCTAAAACTGTGTAACCTAATTTTGTTTCTTGCAACATTATTGGCTT TTTACCATGGATTACCACTCTTCAGGAAAGAAGTAAAAGATAACCTGTTCATAATATTCAACCAAGCAAGTTTTGGATAA GCATTTTGTTGGACTATAACTGTTCCCTGCGTGTGTTTACACAGATATTGTACTGTTTCAGGCAGTTGTATGAGAACAAA ATTATTGTTTGAAATAACCTTGTTTGTTGGCCCTATGCCATTAAATGAATATAAGTAAAAATAAAAGTGACGAATGTTGA TCTAGCCTGGTTTCTGTGGGTTGCTTGTTTGTGGTTTGCTGTTTATCTGCAATTATCGATATTGTGCTGCCTTTGGATGT ACTTTGGTTTGGAGTTTACTAGTGTTCCAAAGGTCCTTTTTAATTTTCCTCTAAGACTTGTAAGCATTCGCCCTTTGTAT ATTTTTTTACTGATGCATAAAAGAGAGGAAAGGGAAATTGGCAGGATGTCACTAATTTTAGTAAATGATCCTTCCTTGCA GTTAAAGATCTCTTCATTGAAGTTCAAGCGTTTTGCATTGAGTTTTCGCGGATTAGAGAGGCAGCTGCGTTATTTAGGCT TCTCAAATCATTGGAATGA
CDS sequence (LotjaGi6g1v0002700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTATTCGGAGATTGAGTGGTGAAGAGTCAATGTCACTCTTCTCTCTCCTGAAAGCAGATCAGCGCCCAATCCATGA GATCCTCGACAATAAGGTTCTCACCACTACTGAACGATTGATAGCTTTTTCTCTGCTACTTGAGGCTTATTCATCTCAGA AACCTGCTTCCAATCCCTTCATAACCTTTATCATTAATGCTTCCTGTGATGAAGGGTCCATAAAAGTTGAGAGGGCATTT ATTCTACAACTATTAGGTGTTGATAGCTCCAACAGTGGCAAAGAGTTTCTTAAACAGTCTGCCTCAGATTATGTGCAAGG ATTTGATCAGTCATTGCATGAGTTTCCTCCACTAGACCAGTTGCAGCAACAGTTTTCTGATAAAGTTCATCCAAAACCAT ATCATTGTTTATTTAAAGATGGTTCTGTGAGAAACGTGGTCCCAGACCCAGATGTTCCTCCAAGTTGTGATCCAGATTCA TCAGAGTTTGATTTACGACCTGGAGCAAAACCTAAACTTGGCACCGGAGATAAAGACGAGGCTGTTGTTGGGTTATTGTC AAATCTTTCGCTGGAAGGATTAAGTCCTCACTGGATCAGGCCTCTTCCACCAAGGCTCCCTATACTTGATGGGGAGCTAG TTTGGCTCAACCCTGACGACAATCATGAACTTATGTGGGACTATGGTATGTGCGTTGATACTAGCAGAGGGGCTGCAGTT AGGGACTTAATTGCAAAAGCTCTGAAGGGTGCTCTTGCACCTACTCAGCAAGAGCAAGTCCTGTTGGAGCTGGGAAATGA TCCAAAGCTCGTATATCATTGTGGACTGACCCCAAGAAAGTTGCCAGAACTGGTGGAAAACAATCCTCTGATTGCAGTTG ATGTTCTCACTAAGTTGATAAATTCTCCTGAAATAGCAGAATACTTTACAGTACTTGTGAACATGGACATGAGTCTACAC TCAATGGAAGTTGTGAACAGGCTTACAACTGCAGTTGAACTGCCGTCGGAATTCATTCACATGTACATAACTAACTGTAT ATCATCCTGTGTGAGCATTAAGGATAAATACATGCAGAATAGGCTTGTCAGACTTGTTTGTGTCTTTCTGCAAAGCCTAA TTCGGAATAACATTATCAATGTTAAAGATCTCTTCATTGAAGTTCAAGCGTTTTGCATTGAGTTTTCGCGGATTAGAGAG GCAGCTGCGTTATTTAGGCTTCTCAAATCATTGGAATGA
Protein sequence (LotjaGi6g1v0002700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIRRLSGEESMSLFSLLKADQRPIHEILDNKVLTTTERLIAFSLLLEAYSSQKPASNPFITFIINASCDEGSIKVERAF ILQLLGVDSSNSGKEFLKQSASDYVQGFDQSLHEFPPLDQLQQQFSDKVHPKPYHCLFKDGSVRNVVPDPDVPPSCDPDS SEFDLRPGAKPKLGTGDKDEAVVGLLSNLSLEGLSPHWIRPLPPRLPILDGELVWLNPDDNHELMWDYGMCVDTSRGAAV RDLIAKALKGALAPTQQEQVLLELGNDPKLVYHCGLTPRKLPELVENNPLIAVDVLTKLINSPEIAEYFTVLVNMDMSLH SMEVVNRLTTAVELPSEFIHMYITNCISSCVSIKDKYMQNRLVRLVCVFLQSLIRNNIINVKDLFIEVQAFCIEFSRIRE AAALFRLLKSLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 412 | 384 | 2.3E-166 | ||
| MobiDBLite | 148 | 176 | 29 | - | – | |
| Pfam | 285 | 409 | 125 | 1.1E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi6g1v0002700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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