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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0004300 |
| Transcript ID | LotjaGi6g1v0004300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptide transporter; TAIR: AT5G46050.1 peptide transporter 3; Swiss-Prot: sp|Q9FNL7|PTR3_ARATH Protein NRT1/ PTR FAMILY 5.2; TrEMBL-Plants: tr|A0A151SS26|A0A151SS26_CAJCA Peptide transporter PTR3-A; Found in the gene: LotjaGi6g1v0004300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:861381..864236) extracted from Lotus japonicus Gifu genome v1.2.
AAACAAATACTCCGCTTTGTTAGTGCTCCTCCAAAAGAGTGCAGGATGGTGAGTGAGTACACACAAGATGGAACTGTGGA TCTTAAAGGAAAACCTGTTCTCAAATCCAAAACAGGTGCCTGGAAAGCTTGCTCCTTAATTGTTGGTAGCCTCCCTCTCA CTTTCTCATGCTGTACTTATATTTAATTTGCATGTTTTTCCAAAACTATGTCACTTACTGGAGGATTGGAATTGCCTGCT CTTTGGACATATGTAATGCAGTGTACGAGATATTTGAAAGAATGGCTTATTATGGGATTTCATCAAATTTGATCTTGTAT CTGACGACAAAGCTTCACCAAGGCACTGTAACATCTTCCAACAATGTCACCAATTGGGCTGGTATCATTTGGCTAACTCC CATATTAGGAGCTTATGTTGCAGATGCTCACCTTGGCCGCTATTGGACTTTTGTCATTGCCTCCTTTATCTATTTATCGG TATGTCTCTCTTTCCATTTGAATTCTGCTATATATCTATTTGTGCTGTGGTAGTTTCAGTGAGATAAAATCAACTCCTCT AAATACTAAACAGGATACTATCAGTTATAATAAAGAAAGGATTAGGAATCCACCACTCTTAATTTGTGCTTAGTGATGGA TATTTAGTATATATCCTGATTAGTATTTAGGAGGAGTTGTCCTGTTAAACATTTTGGGCTGGTTGAGTGCATATTTGAAA ATCTTTCTACCTGTAAGTAGTTTTTAGGCGTCAAAATTAATTTTGACCAAAGAAAAACTGATCCAGACATGCTATGAATT GTTCATGTTTATTGTTGGAATTTGCAGGGTATGTGTCTGCTTACCCTATCAGTTTCCCTTCCAAGCCTAAAGCCACCTGA GTGCTATGAAAAGGATGTGACAAGATGCAAAGAAGCCTCCACATTACAGCTAGCTGTGTTCTATGGCGCACTCTACATTT TAGCAGTGGGAACTGGTGGAACCAAACCCAACATTTCCACTATTGGTGCTGACCAGTTTGATGATTTTGACCCCAAAGAG AAGGCACAAAAGTTGTCATTCTTCAACTGGTGGTTCTCCAGCATCACCATAGGGACCCTCTTTGCAATTTGTGCTCTAGT CTACATACAAGATAATGTGGGATGGACTCTTGGTTATGGTCTTCCAACTATTGGTCTTGCAATTGCAATTATCATATTTC TTGCAGGCACACCCTTCTATAGACACAAAATTCTCTCAGGGAGTCCCTTCACTAAAATGGCTAAGGTCATAGTAGCATCT GTAAGGAAATGGAAAGTGCCTCTTCCTAGAGACTCTAAAGAGCTATATGAGCTTGATTTGGAAGAGTATGCAAAGGAAGG GACATTTAGAATTAAACCCACTCCAACATTAAGGTAAAATTAACCATTTTTTATTAGGGTTCTTGTAAAAAAAATCGCTT TTTTATTCTCTTAAAATTTGACGTTTTTATTTTGGTCCATGTAATATTTTTTTCATTATTAGACCCTCAAACATGTACTT TTGGTCCTCGTGAATGACTGCCAACATGACATTTGTATTTGTTAAGGACAAACATGGCATTTGTAGTTTTCAAGGACTAA AACCACATGACCATGTATTTTTTAAGGACTAGAACATTTTTGCTGGGACCAAAAACTTATTTAAGCAAAATTCTAGTCTC CATTCTCATCTATTTGATGTTTGATTTTACTATTGTTGTGTTTGCAAATAAATTTGTTGATATGCAGGTTCCTCAACAAG GCTTGTGTAATAACTGGTTCAAGTACTAGTAGTAGTAAATGGATCCTATGCTCAGTTACACAGGTAGAGGAGACTAAGCA AATGCTAAGGATGATCCCCATCTTGGTTGCTACATTCCTTCCTAGTACAATTTTTGCTCAGATAAATACCCTCTTTGTAA AGCAAGGAACTACACTTGATAGAGGCATTGGCAAATTCAATGTCCCCCCAGCAAGTTTAATTGCATTTGCATGTCTGTCA TTTCTTATCACTGTTGTTCTCTACGACCGTTTCTTTGTCAAGATTATGCAAAGATTGACTAAGAACCCTAGAGGGATTAC TCTGCTTCAAAGGATGGGCACAGGAATCATAATCCACATAGTGAATATAATAGTTGCTGCTTTGATTGAAAGATATAGAC TTAGTGTGGCAAAACAGCATGGGCTAGTTGAAAATGGAGGACAGGTTCCATTGAGCATATTCATCTTGGCTCCTCAGTTT ACACTTATGGGAATAGCTAATGCTTTCTTAGAGGTTGCAACAATTGAGTTCTTCTATGACCAGGCCCCAGAAAGCATGAA GAGCCTGGGCACTTCCTATTCATTGACTTCATCAGGCATTGGATATTTCCTCAGCACTGTTATTCTCTCAACAGTTTCAC ATGTCACCCAAAAACATGGCCACAAAGGCTGGATTTTGAACAACCTGAATGCTTCTCATCTTGATTACTACTACATGTTT TTGGCAATACTGAATATCCTGAACTTCATCTTTTTCATGATTGTCACAAAGTTCTATGTGTATAGGGCTGAAGTTTCAGA TTCCCTGAAGGTGCTTGAAGCTGAACTGGAGGAGAAAATGACCTCTGTGCCAAAACAGGCGAGTCCAAGTGATTAGTTGA TTGGAAATCAGAAACTGGAAAGAGGATGAGAAATATGTACCTAATATTTGTACCTGCTTACACAACTACTCATATATTAT GATTTATTTTAAAGGTTATTCCTTTTAGAGTGTTAAGTTTAGGGGTTCATAATCTCATTTTGTATAAGTTTTATAATGTG TAAACTACAAGTGATTTCTATTATGGTGTAAAATAGAAATAAAATAAAACTTTAAA
CDS sequence (LotjaGi6g1v0004300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGTGAGTACACACAAGATGGAACTGTGGATCTTAAAGGAAAACCTGTTCTCAAATCCAAAACAGGTGCCTGGAA AGCTTGCTCCTTAATTGTTGTGTACGAGATATTTGAAAGAATGGCTTATTATGGGATTTCATCAAATTTGATCTTGTATC TGACGACAAAGCTTCACCAAGGCACTGTAACATCTTCCAACAATGTCACCAATTGGGCTGGTATCATTTGGCTAACTCCC ATATTAGGAGCTTATGTTGCAGATGCTCACCTTGGCCGCTATTGGACTTTTGTCATTGCCTCCTTTATCTATTTATCGGG TATGTGTCTGCTTACCCTATCAGTTTCCCTTCCAAGCCTAAAGCCACCTGAGTGCTATGAAAAGGATGTGACAAGATGCA AAGAAGCCTCCACATTACAGCTAGCTGTGTTCTATGGCGCACTCTACATTTTAGCAGTGGGAACTGGTGGAACCAAACCC AACATTTCCACTATTGGTGCTGACCAGTTTGATGATTTTGACCCCAAAGAGAAGGCACAAAAGTTGTCATTCTTCAACTG GTGGTTCTCCAGCATCACCATAGGGACCCTCTTTGCAATTTGTGCTCTAGTCTACATACAAGATAATGTGGGATGGACTC TTGGTTATGGTCTTCCAACTATTGGTCTTGCAATTGCAATTATCATATTTCTTGCAGGCACACCCTTCTATAGACACAAA ATTCTCTCAGGGAGTCCCTTCACTAAAATGGCTAAGGTCATAGTAGCATCTGTAAGGAAATGGAAAGTGCCTCTTCCTAG AGACTCTAAAGAGCTATATGAGCTTGATTTGGAAGAGTATGCAAAGGAAGGGACATTTAGAATTAAACCCACTCCAACAT TAAGGTTCCTCAACAAGGCTTGTGTAATAACTGGTTCAAGTACTAGTAGTAGTAAATGGATCCTATGCTCAGTTACACAG GTAGAGGAGACTAAGCAAATGCTAAGGATGATCCCCATCTTGGTTGCTACATTCCTTCCTAGTACAATTTTTGCTCAGAT AAATACCCTCTTTGTAAAGCAAGGAACTACACTTGATAGAGGCATTGGCAAATTCAATGTCCCCCCAGCAAGTTTAATTG CATTTGCATGTCTGTCATTTCTTATCACTGTTGTTCTCTACGACCGTTTCTTTGTCAAGATTATGCAAAGATTGACTAAG AACCCTAGAGGGATTACTCTGCTTCAAAGGATGGGCACAGGAATCATAATCCACATAGTGAATATAATAGTTGCTGCTTT GATTGAAAGATATAGACTTAGTGTGGCAAAACAGCATGGGCTAGTTGAAAATGGAGGACAGGTTCCATTGAGCATATTCA TCTTGGCTCCTCAGTTTACACTTATGGGAATAGCTAATGCTTTCTTAGAGGTTGCAACAATTGAGTTCTTCTATGACCAG GCCCCAGAAAGCATGAAGAGCCTGGGCACTTCCTATTCATTGACTTCATCAGGCATTGGATATTTCCTCAGCACTGTTAT TCTCTCAACAGTTTCACATGTCACCCAAAAACATGGCCACAAAGGCTGGATTTTGAACAACCTGAATGCTTCTCATCTTG ATTACTACTACATGTTTTTGGCAATACTGAATATCCTGAACTTCATCTTTTTCATGATTGTCACAAAGTTCTATGTGTAT AGGGCTGAAGTTTCAGATTCCCTGAAGGTGCTTGAAGCTGAACTGGAGGAGAAAATGACCTCTGTGCCAAAACAGGCGAG TCCAAGTGATTAG
Protein sequence (LotjaGi6g1v0004300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSEYTQDGTVDLKGKPVLKSKTGAWKACSLIVVYEIFERMAYYGISSNLILYLTTKLHQGTVTSSNNVTNWAGIIWLTP ILGAYVADAHLGRYWTFVIASFIYLSGMCLLTLSVSLPSLKPPECYEKDVTRCKEASTLQLAVFYGALYILAVGTGGTKP NISTIGADQFDDFDPKEKAQKLSFFNWWFSSITIGTLFAICALVYIQDNVGWTLGYGLPTIGLAIAIIIFLAGTPFYRHK ILSGSPFTKMAKVIVASVRKWKVPLPRDSKELYELDLEEYAKEGTFRIKPTPTLRFLNKACVITGSSTSSSKWILCSVTQ VEETKQMLRMIPILVATFLPSTIFAQINTLFVKQGTTLDRGIGKFNVPPASLIAFACLSFLITVVLYDRFFVKIMQRLTK NPRGITLLQRMGTGIIIHIVNIIVAALIERYRLSVAKQHGLVENGGQVPLSIFILAPQFTLMGIANAFLEVATIEFFYDQ APESMKSLGTSYSLTSSGIGYFLSTVILSTVSHVTQKHGHKGWILNNLNASHLDYYYMFLAILNILNFIFFMIVTKFYVY RAEVSDSLKVLEAELEEKMTSVPKQASPSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 68 | 68 | - | – | |
| Gene3D | 2 | 567 | 566 | 7.3E-200 | – | |
| PANTHER | 4 | 572 | 569 | 0.0 | – | |
| PANTHER | 4 | 572 | 569 | 0.0 | ||
| SUPERFAMILY | 19 | 556 | 538 | 1.83E-21 | ||
| CDD | 26 | 560 | 535 | 0.0 | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| TMHMM | 69 | 87 | 19 | - | – | |
| Phobius | 69 | 87 | 19 | - | – | |
| Phobius | 88 | 93 | 6 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 94 | 117 | 24 | - | – | |
| Pfam | 94 | 524 | 431 | 6.2E-103 | ||
| Phobius | 118 | 136 | 19 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 137 | 154 | 18 | - | – | |
| Phobius | 155 | 184 | 30 | - | – | |
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 185 | 206 | 22 | - | – | |
| Phobius | 207 | 217 | 11 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 218 | 237 | 20 | - | – | |
| Phobius | 238 | 326 | 89 | - | – | |
| Phobius | 327 | 347 | 21 | - | – | |
| TMHMM | 330 | 352 | 23 | - | – | |
| Phobius | 348 | 366 | 19 | - | – | |
| Phobius | 367 | 387 | 21 | - | – | |
| TMHMM | 367 | 386 | 20 | - | – | |
| Phobius | 388 | 406 | 19 | - | – | |
| TMHMM | 406 | 428 | 23 | - | – | |
| Phobius | 407 | 428 | 22 | - | – | |
| Phobius | 429 | 447 | 19 | - | – | |
| Phobius | 448 | 469 | 22 | - | – | |
| TMHMM | 450 | 472 | 23 | - | – | |
| Phobius | 470 | 489 | 20 | - | – | |
| Phobius | 490 | 515 | 26 | - | – | |
| TMHMM | 493 | 515 | 23 | - | – | |
| Phobius | 516 | 534 | 19 | - | – | |
| TMHMM | 535 | 554 | 20 | - | – | |
| Phobius | 535 | 559 | 25 | - | – | |
| Phobius | 560 | 590 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0004300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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