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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0005000 |
| Transcript ID | LotjaGi6g1v0005000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A151T1R8|A0A151T1R8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0005000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:984077..984670) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAGGCATCAGCACAACCATCACCAACATAGCAGGGAGCAGCTCCAATTTGATGATGACTATGTCTTCATCAGCCTC ATCATCATCATCAACAACAGCAGCAACATCATCACCACCATCAACAACTCCGAGCCGCTACGAGAACCAGAAGCGAAGAG ACTGGAACACGTTTGGCCAGTACCTTAGAAACCATAGACCGCCACTGTCGCTCTCACGCTGCAGCGGCGCTCATGTGCTT GAGTTCCTAAGGTACCTTGACCAATTCGGGAAGACAAAGGTTCACACACATGTTTGTCCATTCTTCGGACACCCGAACCC CCCTGCACCGTGTCCATGTCCCCTGCGCCAAGCGTGGGGGAGCTTGGACGCGCTGATAGGGAGGCTCAGGGCTGCGTTTG AAGAGAATGGAGGGAAGCCGGAGGCGAACCCTTTCGGTGCTCGAGCGGTGAGGCTCTACCTTCGTGAAGTGCGTGACTCA CAAGCTAAAGCCAGGGGAATCAGCTACGAGAAAAAGAAGCGCAAGCGTCCACCTCACCCACCACCACCTCCTGCGGCGTT GCCACCATCAAATGGAGCAAGAGCAACTCACTAG
CDS sequence (LotjaGi6g1v0005000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGACTATGTCTTCATCAGCCTCATCATCATCATCAACAACAGCAGCAACATCATCACCACCATCAACAACTCCGAG CCGCTACGAGAACCAGAAGCGAAGAGACTGGAACACGTTTGGCCAGTACCTTAGAAACCATAGACCGCCACTGTCGCTCT CACGCTGCAGCGGCGCTCATGTGCTTGAGTTCCTAAGGTACCTTGACCAATTCGGGAAGACAAAGGTTCACACACATGTT TGTCCATTCTTCGGACACCCGAACCCCCCTGCACCGTGTCCATGTCCCCTGCGCCAAGCGTGGGGGAGCTTGGACGCGCT GATAGGGAGGCTCAGGGCTGCGTTTGAAGAGAATGGAGGGAAGCCGGAGGCGAACCCTTTCGGTGCTCGAGCGGTGAGGC TCTACCTTCGTGAAGTGCGTGACTCACAAGCTAAAGCCAGGGGAATCAGCTACGAGAAAAAGAAGCGCAAGCGTCCACCT CACCCACCACCACCTCCTGCGGCGTTGCCACCATCAAATGGAGCAAGAGCAACTCACTAG
Protein sequence (LotjaGi6g1v0005000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMTMSSSASSSSSTTAATSSPPSTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHV CPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP HPPPPPAALPPSNGARATH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 6 | 176 | 171 | 5.3E-104 | – | |
| Phobius | 6 | 14 | 9 | - | – | |
| PANTHER | 6 | 176 | 171 | 5.3E-104 | ||
| Phobius | 15 | 19 | 5 | - | – | |
| Pfam | 19 | 141 | 123 | 2.4E-66 | ||
| Phobius | 20 | 179 | 160 | - | – | |
| ProSiteProfiles | 28 | 155 | 128 | 86.805 | ||
| MobiDBLite | 142 | 179 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0005000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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