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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0006500 |
Transcript ID | LotjaGi6g1v0006500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Fatty acid oxidation complex subunit alpha; TAIR: AT4G14440.1 3-hydroxyacyl-CoA dehydratase 1; Swiss-Prot: sp|O23300|ECI3_ARATH Enoyl-CoA delta isomerase 3; TrEMBL-Plants: tr|A0A1J7HZ00|A0A1J7HZ00_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0006500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1282522..1283947) extracted from Lotus japonicus Gifu genome v1.2.
GAAGGATTACAACTCATTGCATTCACATTTTTAAATCTTAGAGGTACTGACGTTAAAGACTTAAAATAACCCTAAAAGGA TCTTCTGGAGGTGTTGATATTGTGACGAAAGTTAAAAATTATTACTTAACCCAATCAAATTGTTACTTGTGATTTATGAG TTAGAATATGGTTCTTAAATTGGCTATGTGAAAAAATGGAGTGTCAAAACTTATGCAACTATTTCAAGTGGGTCATTGAA GAACTCTCAACTAGTGAATGTTGACTAGCTAGCTATGAACATTAACTTAAAGCATTCACTCTCACACACACGGTCAACAC TCAACACACAACCAAAACAATGTGTACATTAGAAAAACGAGGATCGCTCTTCATTCTAACCCTAACCACCGACGACGACG ACCAACACCGTCTCAACCCCACCCTCATCTCTTCCCTCCTCACCGCAATTACCCAAATCAAGTCCCAAGCCACCGACGGC TCCGCCCTCGTCACCGCCGCGCACGGCAGATTCTTCTGCAACGGATTCGACTTCGACTATGCCCGGGCTGCCGGCTCCGT CACCGGATCCCGCACCCGCCTCCGACACATGTCCGACTCCCTCCGGCCTGTTATAGCAGCGCTGTTCTCCCTCCCGATGC CCACTGTCGCTGCCGTCTCCGGTCACGCCGCCGCTGCCGGGCTCATCCTCGCCTTGGCGCACGACTATGTCGTCATGAGG AGCGACCGCGGCGTACTCTACTTGCCGGAGATGGACCTCGGGATCACGCTTCCTGACTACTTCGCCGCCGTGGCGAGGGC GAAGATCGCGCCGGTGCAGGCGAGGCGCGATTTAGTGTTGAGAGGGGTGAAGGTTAGAGCGGTGGAGGCGCTGGAGATGG GGATTGTGCACTCGGCGCACGATAGCGCGGAAAGCACTGTTGAGGCTGCGATGCGCCTGGGGGAGGAGCTGGCTGGGAGG AAGTGGGTGGGTGAGGCTTATGGTGAAATCAGGAAGAGTTTGTACCCTGAAGTTTGTAGTGTTTTGGGTTTGACTCTCAA ACCTGTTATCTCCAAGATATGATTTTCTCAGAATTTGAGTCTGTTTTATCTCTATACTACTATTGTTTTTGTAATGGTAT GTATAAAACATAAACAAATGCATGTATCAAAGTATGAAATCTTGAAATGTGATCAGAAACAAGGAAAAAACTATTATTAT GGTGTATGTATCAAAGTATGAAATCCTGAAATGTAAAGAAAACTCTTTTGAATGGAAAAATCTTTAGGTTAGTTTTGCAC AGCCTCATACTCTGAGAGATTGGTCTTGGAAAAAACTCATTTGATCAATCATTTACCGTTTAATGCTTTGACTGTGAGGT GAGAGATTAGTCATGTAGCACGAGGAGATACCACCTAACTTGCAGATCCAATACCTCTTGATAGGA
CDS sequence (LotjaGi6g1v0006500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTACATTAGAAAAACGAGGATCGCTCTTCATTCTAACCCTAACCACCGACGACGACGACCAACACCGTCTCAACCC CACCCTCATCTCTTCCCTCCTCACCGCAATTACCCAAATCAAGTCCCAAGCCACCGACGGCTCCGCCCTCGTCACCGCCG CGCACGGCAGATTCTTCTGCAACGGATTCGACTTCGACTATGCCCGGGCTGCCGGCTCCGTCACCGGATCCCGCACCCGC CTCCGACACATGTCCGACTCCCTCCGGCCTGTTATAGCAGCGCTGTTCTCCCTCCCGATGCCCACTGTCGCTGCCGTCTC CGGTCACGCCGCCGCTGCCGGGCTCATCCTCGCCTTGGCGCACGACTATGTCGTCATGAGGAGCGACCGCGGCGTACTCT ACTTGCCGGAGATGGACCTCGGGATCACGCTTCCTGACTACTTCGCCGCCGTGGCGAGGGCGAAGATCGCGCCGGTGCAG GCGAGGCGCGATTTAGTGTTGAGAGGGGTGAAGGTTAGAGCGGTGGAGGCGCTGGAGATGGGGATTGTGCACTCGGCGCA CGATAGCGCGGAAAGCACTGTTGAGGCTGCGATGCGCCTGGGGGAGGAGCTGGCTGGGAGGAAGTGGGTGGGTGAGGCTT ATGGTGAAATCAGGAAGAGTTTGTACCCTGAAGTTTGTAGTGTTTTGGGTTTGACTCTCAAACCTGTTATCTCCAAGATA TGA
Protein sequence (LotjaGi6g1v0006500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCTLEKRGSLFILTLTTDDDDQHRLNPTLISSLLTAITQIKSQATDGSALVTAAHGRFFCNGFDFDYARAAGSVTGSRTR LRHMSDSLRPVIAALFSLPMPTVAAVSGHAAAAGLILALAHDYVVMRSDRGVLYLPEMDLGITLPDYFAAVARAKIAPVQ ARRDLVLRGVKVRAVEALEMGIVHSAHDSAESTVEAAMRLGEELAGRKWVGEAYGEIRKSLYPEVCSVLGLTLKPVISKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 90 | 90 | - | – | |
PANTHER | 1 | 237 | 237 | 2.0E-87 | – | |
PANTHER | 1 | 237 | 237 | 2.0E-87 | – | |
Gene3D | 2 | 231 | 230 | 5.7E-43 | – | |
CDD | 2 | 204 | 203 | 9.48089E-18 | – | |
SUPERFAMILY | 3 | 209 | 207 | 1.1E-34 | ||
Pfam | 24 | 205 | 182 | 4.7E-22 | ||
Phobius | 91 | 120 | 30 | - | – | |
Phobius | 121 | 240 | 120 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi6g1v0006500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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