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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0006700 |
| Transcript ID | LotjaGi6g1v0006700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0006700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1299418..1303821) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGATTATGTCAACTTTCCAATTCTCAAAATCTTTAGTTTCACTTTTCCATAATCATAAATTACAATATTAATTATAA CCTTTTATATTTCTAACGTTATTCTCAATTGCCACACTTACATAACACTCTCACTCACCTTGCCGTTTCAGTTTTCCCTT TCACGCTCTCACTCTCACTCACCTTGCAGGGTCGCGTTCCCTCTCTCTGCCTCGCTTTCCCTCTCCCTCTCAAGTGCAGT TTCAGTTTTCTGCTCCTTGCATCGCCTTCCCTCTCCTGGTCGCGTTACCTCTCTCTTCTTGCGTTCTCTCTCACGGCGAA GGTCACCCTCCCTCACCGCCGTCTTCTTCCTTTTCCGGTAAGTGCTCTACTGTTCTTCATTCCTCTGTAGAAATCCATAC TTGAAACCCTATTGCTATATTGGTACTTCCCATAGGGGTGGGTTTTTTTGTCAATTTTGTGACTGTTATGTATGGAATTT TCTGTTGTAGTATCAATACAGAATTTGATTGCTATATTGGAACCCCTATTGCTATATTGGTACTTCTAACTGTCTTAATT ATTAAACATAATATGTTCTTAATTTTGCCATTTGGAAGCTATAATTTTGCAAGCATACTAATCATCATGCTTATCTAAGA GAATTAAGATGGAAAAGATTTAAGCAGAGGCTAATGATTTGTATTATGTGTTAAAGAAACATTTTTTTTTGGCAAAGCTT CCATTTGCATCTGGAACAATTTATGCACTGGAAGTCAGACATCTGAATAATTGATACTAAACAAGGTTCTAACATTAATA GCTAGTAATCTATAACGAAATAAATTTGACTTCAAAAAATTACAAATTGTAATAAGCTTTTATCTATTCATCTAGCAAAA GAGAGCCTGATACACAAAATTGTAGGTAAAAAAATTACGTTTAGTATCTTATTAGTCAACAGACCAGATCTGATAAGGAA CTAAATGACCTGTACAATAAGCATTTGAATTTGTAATGTTTGAAACAGATTGGGTGTTATAGTAAGGCCTTATGTAAATA TGTAGTTGTCAAGGTACTTTCATGTTCATCTTGATATCAAATTCCATCCCTTATGTAATCTGATTCTTCATTATATTCTT GGAAATAAATTGAGATTGTGGTTCAAAATTGAAATTTTTCTGTGTATTATCTGTCCATAAGAATCGCATCTGATCATCAG AGCAATCCATGTGATTCTTAGAATTTCTAGGTGCATTGTATGCCTTTATTTATTTGATGGAAAAACCTTCAAAATATCTA AGAGATCTTCTTGAAAAAACCTGTTTCTTTGGTATACTTGTTATGGTACTGATTTAGAATGAAATTTAGGTTGGATGCTA TTCTTTGATATACTTGTCATGGTACTGATTTAGAATGAATGTTTCATTTTCTTCATATAAATTTGCTTTTTTGGATCTTT ATAGCTACTAGGAGCCACACAACTTTCTTTATTCTCTAGATTTACTACTATGTTGCCGACATGAAGAATTAAATTTATTT TCAGGTCCACAAAATGGCTTCTGCACTTGAGAACAATGAACCGGTTTCAACCAATCCCGTTGTTATGGCTGTGGATGAAC TTGTCCAACCAGATTCGAGTCAGCTACAAGATAATGAACAAGGAAATGATCAAGTAGGCGAAGAGGCGGTTGTCAAGAGA AAGAGGAAGAAAACATCATCTGTTTGGGAAGATTTTTATGAAGTTAACCTTGCAGGAGGTAAAATGAAAGCTGTTTGCAA GTATTGCAAACAAAAATTTGCAACTGGTGGAGTAGGGGCTAGTACTAGCCATTTGAGAAGGCATGGAGAAGTTTGCACAC AAAAGTCGCTGCAGAAGGCTAGTGAAAAAAAGCAGAGTGTCATTCCTTTTCAGCCTTCTAATGGTAATCCATTTATAATA TCTGGTGCTAGATACAACAATGAAAAGATGAGGGAGATAATTGCTTCTGCGATAATGGTTCATGAAATGCCTTTTAATGT TGTTGAAGATGAAGTTTGGATGTGGGCATTCCAGTATGCAAATTCTGATTTTACAAAGGTGACTCGTAAGACTATTAGAA AAGATTGTTTAGCATTGTATGAGGCAGAGAAGAAAATTTTGAAGACTATGCTGAATAGTGTGAACAAGATTAGCTTGACA ACAGACATGTGGAAATCAAGCCACAAAGTAACTGAATATATGGTGCTCACAGGTCACTTCATTGATGTTGGGTGGAAGCT TCAGAAAAGAGTTTTGAGTTTTGTGAAAGTTCCTGCTCCTAGGCGTGGGGTTGATGTTGCTGATGCCATTTTCAAGTGTT TGAAAGTTTGGGGGCTTGAAAATAAAGTCTTTTCTGTTTCTGTTGACAATGCTGCCTATAATGATACATGCTTAAAAAAT CTCAAGGATACCTTATCATTAAGCAGCAAATTATTCCTTAACGGTGCATTGTTTCATGTTAGGTGTTGTGCGCACATATT AAATTTGCTGGTGCAAGATGGCCTAGGAAAGATCAAGAGTATCATTTTCAATGTTCGTGAAAGTGTAAAATACATCAACT ACAATGATGCAAGATTAAAGAACTTTTGTGATGTGGTTGAACAGAAGCGTTTGAAAGAGAGGAAGCTTATCATGGATTGC CCAACAAGATGGAATTCAACATTTCGTATGTTGGCAACTGCTTTGAAATTCAAGACTGCATTTGATGCTTACAAGGAAAG AGAGCCCCATTATGATTATACACCTTCAGCTGAAGATTGGAGCAAAGTTGAGAAGGTTTGCAAACTTCTAGAAGTGTTTG ATCTAGCTACTCATGTTATATCAGGTAGTGAGTATCCGACTTCAAATTTATACCTTGCGGAAGTTTGGAGAGTTAAACAA GTAATTGATAATGCATCTGAGGATGAAGATCTCTTCATGAGAGAAATGGCAGCTCCAATGAAAGAAAAATTTGACAAATA TTGGGGTGAGTGTAATTTACTTATGGCAATTGCTAGTGTTTTAGATCCTAGGTGCAAATTTCATATTGTTGATATTTGTT TTCCCATGATATACCAACCTGCGAAAGTTGCCATAGAGATAGAGAAGGTAAGAAGTTCATTGGAAAATTTATATGATGAA TATGTGTCTTTGAGTATTCAAGAGTCATCCTCTGCGACTGAGAATGCAAATGGTGGTGGTAACAATCCAACATCCTCATC TGAACCTAGATCTTCATTCACTGGATTTGACCAAATTATGAATCTTGTGCGTGAAAAGGAAGCGGTTCCTCCAATGAAAT CAGAACTGCAAGCTTATTATGATGAAGGTGTCTATGTTCCAGATGGTGATGGTAACTCATTCAACACATTGGACTGGTGG AGGAATAATAGCTTTAAATATAAGGTCTTGTCGAAGATGGCTGCAGATATATTAGCTATACCCATCTCTACTGTGGCATC AGAGTCTACATTTAGTGCATGAGGGCGAGTTATTAATGAGTATCGTTCTAAATTGAACGATGAATCTATTGAAGCACTCA TTTGTGGTGGAGATTGGCTGCGTCATAAGTACAATTTGATGAAGAAGGCAAAGGTAACTTGTTGTTTTTACAAGTTTTTT CTTAAACCTGTATAACATTATTATTTACAAAATATTTTTCAGTTCAATGACATTTTCTTATTTTAATTTGAAGGTGGATG AAAGACATGCGGTGATCAACTTGAAGATCTGATGCAATGATGTCATTCTTGAAGATGAGGCTGGTTATGAAGGAAACAAG TAGATCAATATGAAGATGTGATGTTTTTTTATTGAGATTGTTTTGATGTTATTTGTGTTGTCAACTATATTAAGTATTGT GTCTGTTTGTGAGTTGTGACTCTATTATTGTTTTAGTTTCCTTTTGGACTTCTTTAGTTATGATTCTGTTGTCATGCTCA TGTTGGTGCAGCAGGTGGTTATTTTCTTGTTCTGGTTTTGGAACCTTTGAAGCTTTATTAATATTTTATGATCTTTCAAG TTTATTATGACAGGAAAGAAGCTAAATTTCTAATATATTATGCTGCATTTTGTGCTTGAATTGTGCTTCTGTTGGATTGT ATGTTGCTGCTGTACAAAAATGAGGTTGTTCAATGTTGGTACTTGATGTTGGTTCACTTATTTTGTTGATTGTGTCTTTA TAAAGAATTGTAAAGTGCTGTTGTTCACCATTGGGATGCTATCTTATTTTGTGAGGTGGTTTATATTGTTGCAGAATTAC ATAAATAAATAAAAAATGAGATGGTTATATTTGTATAAAATTTATTCTGAAATAGGCTATTAAATAGGCTACCAGGCCAG GCCAGGCTTTCAAAAAGGCCAGGCGAGGCAAAAAAAAAAAAGCCTATGATAGATAATAGGCCAGGCTAAGGCCTTAAAAT TTTG
CDS sequence (LotjaGi6g1v0006700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTGCACTTGAGAACAATGAACCGGTTTCAACCAATCCCGTTGTTATGGCTGTGGATGAACTTGTCCAACCAGA TTCGAGTCAGCTACAAGATAATGAACAAGGAAATGATCAAGTAGGCGAAGAGGCGGTTGTCAAGAGAAAGAGGAAGAAAA CATCATCTGTTTGGGAAGATTTTTATGAAGTTAACCTTGCAGGAGGTAAAATGAAAGCTGTTTGCAAGTATTGCAAACAA AAATTTGCAACTGGTGGAGTAGGGGCTAGTACTAGCCATTTGAGAAGGCATGGAGAAGTTTGCACACAAAAGTCGCTGCA GAAGGCTAGTGAAAAAAAGCAGAGTGTCATTCCTTTTCAGCCTTCTAATGGTAATCCATTTATAATATCTGGTGCTAGAT ACAACAATGAAAAGATGAGGGAGATAATTGCTTCTGCGATAATGGTTCATGAAATGCCTTTTAATGTTGTTGAAGATGAA GTTTGGATGTGGGCATTCCAGTATGCAAATTCTGATTTTACAAAGGTGACTCGTAAGACTATTAGAAAAGATTGTTTAGC ATTGTATGAGGCAGAGAAGAAAATTTTGAAGACTATGCTGAATAGTGTGAACAAGATTAGCTTGACAACAGACATGTGGA AATCAAGCCACAAAGTAACTGAATATATGGTGCTCACAGGTCACTTCATTGATGTTGGGTGGAAGCTTCAGAAAAGAGTT TTGAGTTTTGTGAAAGTTCCTGCTCCTAGGCGTGGGGTTGATGTTGCTGATGCCATTTTCAAGTGTTTGAAAGTTTGGGG GCTTGAAAATAAAGTCTTTTCTGTTTCTGTTGACAATGCTGCCTATAATGATACATGCTTAAAAAATCTCAAGGATACCT TATCATTAAGCAGCAAATTATTCCTTAACGGTGCATTGTTTCATGTTAGGTGTTGTGCGCACATATTAAATTTGCTGGTG CAAGATGGCCTAGGAAAGATCAAGAGTATCATTTTCAATGTTCGTGAAAGTGTAAAATACATCAACTACAATGATGCAAG ATTAAAGAACTTTTGTGATGTGGTTGAACAGAAGCGTTTGAAAGAGAGGAAGCTTATCATGGATTGCCCAACAAGATGGA ATTCAACATTTCGTATGTTGGCAACTGCTTTGAAATTCAAGACTGCATTTGATGCTTACAAGGAAAGAGAGCCCCATTAT GATTATACACCTTCAGCTGAAGATTGGAGCAAAGTTGAGAAGGTTTGCAAACTTCTAGAAGTGTTTGATCTAGCTACTCA TGTTATATCAGGTAGTGAGTATCCGACTTCAAATTTATACCTTGCGGAAGTTTGGAGAGTTAAACAAGTAATTGATAATG CATCTGAGGATGAAGATCTCTTCATGAGAGAAATGGCAGCTCCAATGAAAGAAAAATTTGACAAATATTGGGGTGAGTGT AATTTACTTATGGCAATTGCTAGTGTTTTAGATCCTAGGTGCAAATTTCATATTGTTGATATTTGTTTTCCCATGATATA CCAACCTGCGAAAGTTGCCATAGAGATAGAGAAGGTAAGAAGTTCATTGGAAAATTTATATGATGAATATGTGTCTTTGA GTATTCAAGAGTCATCCTCTGCGACTGAGAATGCAAATGGTGGTGGTAACAATCCAACATCCTCATCTGAACCTAGATCT TCATTCACTGGATTTGACCAAATTATGAATCTTGTGCGTGAAAAGGAAGCGGTTCCTCCAATGAAATCAGAACTGCAAGC TTATTATGATGAAGGTGTCTATGTTCCAGATGGTGATGGTAACTCATTCAACACATTGGACTGGTGGAGGAATAATAGCT TTAAATATAAGGTCTTGTCGAAGATGGCTGCAGATATATTAGCTATACCCATCTCTACTGTGGCATCAGAGTCTACATTT AGTGCATGA
Protein sequence (LotjaGi6g1v0006700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASALENNEPVSTNPVVMAVDELVQPDSSQLQDNEQGNDQVGEEAVVKRKRKKTSSVWEDFYEVNLAGGKMKAVCKYCKQ KFATGGVGASTSHLRRHGEVCTQKSLQKASEKKQSVIPFQPSNGNPFIISGARYNNEKMREIIASAIMVHEMPFNVVEDE VWMWAFQYANSDFTKVTRKTIRKDCLALYEAEKKILKTMLNSVNKISLTTDMWKSSHKVTEYMVLTGHFIDVGWKLQKRV LSFVKVPAPRRGVDVADAIFKCLKVWGLENKVFSVSVDNAAYNDTCLKNLKDTLSLSSKLFLNGALFHVRCCAHILNLLV QDGLGKIKSIIFNVRESVKYINYNDARLKNFCDVVEQKRLKERKLIMDCPTRWNSTFRMLATALKFKTAFDAYKEREPHY DYTPSAEDWSKVEKVCKLLEVFDLATHVISGSEYPTSNLYLAEVWRVKQVIDNASEDEDLFMREMAAPMKEKFDKYWGEC NLLMAIASVLDPRCKFHIVDICFPMIYQPAKVAIEIEKVRSSLENLYDEYVSLSIQESSSATENANGGGNNPTSSSEPRS SFTGFDQIMNLVREKEAVPPMKSELQAYYDEGVYVPDGDGNSFNTLDWWRNNSFKYKVLSKMAADILAIPISTVASESTF SA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 47 | 639 | 593 | 1.3E-146 | – | |
| PANTHER | 47 | 639 | 593 | 1.3E-146 | – | |
| ProSiteProfiles | 52 | 97 | 46 | 10.614 | ||
| SMART | 52 | 104 | 53 | 1.3E-11 | ||
| Pfam | 55 | 97 | 43 | 4.5E-5 | ||
| SUPERFAMILY | 55 | 108 | 54 | 5.36E-6 | ||
| SUPERFAMILY | 193 | 642 | 450 | 4.48E-74 | ||
| Pfam | 430 | 530 | 101 | 9.9E-31 | ||
| MobiDBLite | 540 | 560 | 21 | - | – | |
| Pfam | 584 | 642 | 59 | 8.9E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0006700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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