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LotjaGi6g1v0007000.1

Overview

Field Value
Gene ID LotjaGi6g1v0007000
Transcript ID LotjaGi6g1v0007000.1
Lotus japonicus genome version Gifu v1.2
Description Bet1-like SNARE protein 1-1; TAIR: AT4G14455.1 Target SNARE coiled-coil domain protein; Swiss-Prot: sp|Q94CG2|BET12_ARATH Bet1-like SNARE 1-2; TrEMBL-Plants: tr|I3S2B3|I3S2B3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0007000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:1373682..1379230) extracted from Lotus japonicus Gifu genome v1.2.

CCATGGATTTGCCTTCAAATATTAAATGGAGCAACAAAAAGGTGCATTCACCATAACTTCTGTAGAAGCTACCGTTGGAA ACAGAGAAAGAAAGCCAATGAGGAAAAAAAAAGATCTATATTCACAATGCTGTAGAACGGCATTTTTCAACAAAATGGTA AAAGAAGCGCTTGTGAGTTGTGACATCGCTTCTTTTCATTTCGAGCAGATGAGGGATCATTAGGCAAAGGAGGACGCAAC ACCGCGGAATGGCGGAGTTTGGAGTTGTGGACGCTGGTCTTGGAAGAGAGCACCAGTCATGGGTATAACATGTGGTTGAC CGGTTTTATGACTTCCCGGTTTTCTGGGCATATCAAACCGCTGACCACTCCGGTTCCCGGCTCAACCGGTTCGACCGGCC GGTCCGGTCCGGTTTTGACAACATGATCTAGACAAAGGATATAGATACGACACCGTAAGGCCTAGTTCTCTTCTTTTCTG ATGTGTAATTGAATTTGAATCCAGTTACCCATCACATTCACATTCACATTCAATCAGGATCTTGCTCATCACAACCGATT CTCATACGTAGTTTTTTCTCGAGCAATGAGTTACAGAAGGTTTGTTTTCACCAATAAACCTTTTTTCTCTTCTTTGATAT GTTCTTTCCCTTGATTTCATTTTACGCTGTTTTTCTTGTTTAGCAAATTGCAATGCATGCCTCTCTGACGAATCGCATTC ATATCATGTTTTTTGTTTTCCTTTGTCAGTTCCGGCAGGGGTAGAATAGAATTGTTCTTAGGTATGAAGGATGATTTGGA TTTTGGGGTAGTGCTGGATCTGGATGATGTTAGGTTAAACTATTACTGTGATTGTGAATCAATGCATATGCATTATTCAT TATTCATTAGCTATTCTGTAACTAGGTGAAGTTGAATAGGATCAGAAAGTTTAGGCCTTTTCCAAGAGGAGCAGAAATCA GTTTATGCATTATTATTCATGAGTTAAATTTTCAGTGACCCATTAATGTTAGGATAGGATTGATATTTAGCGAAAAAAAT GCAAAAACTTATTTTTTTATTATAAGCTGTTTTAAGTACAAAATAAATTAATCCAAGCATGGCGCTTTTCGAATAAATGT GATTTTTGAGTCCAAACTCCAAACCAAACTTGGACATTGAGATTGTGTTGTGTTTCAGTCTTTAATTTTTTGAAAAACCA AGTATGAGCTATCATTCTTGTCAACTGGTCAATGCTTGGTTTACTCTGTTCTGATATAAAAGAGCGACTTTAATAGGGTT TTTGGAAGTTGGAGGAATTTGAGTGCAAGGAAGAGGAGTAATAACTTAGAACGTTCTGAAAAGTGAAAACTGCCTTATTG GTTTATTGCTTGATGTTCGCTTAAATCGTGTTTTGTTATCTTGTATATGAATGAGCTATGATCTGGAGACAATTTCTTCA TTACACAATTTCAGCCAATACCCATACTGTAGGTTTTCTATACAGGATATGAAAAACAACCTAGGAAAAAATATGGATTT CGATTTTTGGGAGACCAAAGAGCTTGAAGTTGGAATGCACTTTTATTGTTTAACAATTATATCCTGATATTAATTTCATT AGTGCCTTGTCATTCAGTTTTCAAATTGTCTAAAATCTTGATCTTGTTGTCTGTTTACATCCTTTGTGAACAGATGCCTA CTTTAGGCTCTACCTGCTTTGATTTTTAAATGATACTTGACTTAGAAAAAAATATTTTACAATGAAAATCATGATAAACA TTTCATATCAAGCTCTTAGTAGATAATTTCTGATTCATTTTTTATTTCATTGCTTGATACCATTTTCCTGGTTATTCAAA TTTCAGGATGTCACTGTTTCGTTTCACTTACACTATGCTGCACAGTTTTATCATTAATTTTTTTCCTTGACATATATAGA AAGATTTATTACTGAAGGAAATCTTAGAATCTATATAATCTGGAAATGAATTAGGGGAGGAAAATTCATTGGTCTAGTCT AGTTCTGTTAGTAATAGATTATAGAAAACTGTGTGCAAAGTGCATACATGATGAATGCTATCTTATGCAACAACAACTAC AACAAAAAAGCCTTATCCCACTTAGTTTGGTCGGCTATCAGGATACACAACGCCTTTGTGCTCGGACAGAGGCTAAATTT TGTGGGAGTGCTATCAAATATGCAATTTAGAAAGTATCCTTACGGACTTAAGGCCTATCATGAGGCAAATGTAAGATTAT TTTCACTTCACCAAGTTCCCAACCGGACGCATCAGCTAGGTTTTGACATCTTACCTTTTTCTTGCTAAATTTACTTTTGC TAATATGGAGTTCATCTTGTTTCACACTGTTTCTCTTGAATGTTTCCGACCATTGTGTTTTGCTTTATTGTGGAAGCTGT CATTTAATTTGCATGTTCAGCAATCATTCGTCGTAGTTTTCTAATTCAGTCAATCATATAAACAATGTTTGGTATTGAAA TCAGATAGTTGCCATTAATAACCAACTTTTGAGTTACATTTTACCTGTAAGTCTGGTGACATGGTACAACAAATGTTTAT TTCTTCCATTGGCTTTACCAAACTCCATCTTTTAGAAGATTTCATTTCAGTGATCTTGAGTTCTTGTTTTTATTTTTATT TTATTTTTTGAAAAAACGGTCATCTCATATGTCAACTTTTATAAATGTTTAATTTTCAACTACAGAGATAATCGCTCCTC CAGGTCATCACTTTTAGATGGTCTTGATAGTCTGGAGGAGGGTGGCTTAAAGGCTTCTTCCTCTTACTCACATGAAATTA ATGAGCAAGATAATGATAAAGCTGTGGAGAGTTTGCATGACAGAGTTACTTTTCTAAAGCGAGTAAGTTTTGTCTATTTA AATACTATTTCTCTTTAGTTATTGTCAATTAATATCTTCTCTTAATGTCTTGCTGTGCGAAATTTTAGTTCTTATTAGAT GCTAAGTTACATGGAATGATGGAAAAGTTCTGTTAGTCTTGAAAGTAATATTTGCCATGGTTTTATTGTTGTTTTTAAGG AGAGTTATACTTCGTGCATAAATGTTGTTTGACTTGTTTCTAATTTTCCAATTAAGTTTAGTATCTCTTTCTGAAATTTT GTGAAAATATTGTTTGTCCTTGTTAGAAGTCCCACATTGGCTAGAGATAGAGCATAGATAGCCTTTATAAGGGTAGTGCA AACCTCAACTCCCGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATATGGTATCAGAGCCCTATGACCGA GAGGTCTAGAGTTCGATCCTTGCTCCCCTCACTTTCTAATTAAAAAGTGGAATTTAATTAAGCATATGGTATATGGTAGG TGGGCCTGTGTATTTATCCACGCTTCAAGCCCAAAGGGCTCTTGCATGAGGGGGCGTGTTAAAATATAATATAAAAACCA TTGAAGTGGCCCTTACCCAATAGCTTAAGCTTTTGGGATAAGTGTTTATTTGACAGTCTTGTTTCCAGTTTGTTGTATGA ACCCATTTGGATATGGACCAAGACTACTTACTTGATCTTATCTACTGGAAAAGCACTAGATAAGCTCCAATAAGTGCTCT TTGGACTGCATCCAAACAGATTCTATGTCAAAAACAAACACGTTTTCTTTTTTTGACTGGCATCAATGCATTTGTAAATA AAAATACCACTAAGAGGGATCCATAATTCATGTTTACTGCATGTCTGAAAATGGTTGTGATTTTTTTATCAAGATTATGA GCACATAGCCATCAATTTGTTAATTCCTGATGATATCTTATCCATTTTGACCTAATTTGGCTTGTCTCTTTTGTATGCGG TATATTAGTTATAGGAACGCAAAATGTTCTACCTTGTTGTAACTGGTTTTCTATTTTTGACTAATATATACATGCACATA TGCAGAGAAAGTATGATGTTTAATATCTAATTTAACATGTCTCAGAAATTAGGTAGCCTATAGGTTTCCGCTATATAAAT TTGTAATTATTTGCTTCCTATTTTCTCGGAGTAATCATTTAAGTGAAACGGTCTATTGAGTGTTGACTTATATTTCCTTT AAAGGACCCTTGATGTTTACTTGATCAACAGTTAACAGGTGATATACATGAGGAGGTTGAGAGTCATAACAGTTTGCTTG ATCGAGTGGTATGTAAACAAATTACTATAGTTTTTGTGGACATCTTTTTTCTTTTTATCCTGATTGGATTGCATTGTAAA TTAGGGTAGCAAAATGGACGGATCAAGGGGTATGATGTTGGGAACCATGGATCGATTCAAGAAGGTAACTTTTTTTCCTA TTAATATGCCTGATTTTATTTTCTTTTACTTATTACATTATTGGAAAATGATTTAGTGTATAGAAACTGGATGTTGTAGG TTTTTGAGAAGAAATCGACAAGGAAAACGTGCTCCCTGGCAGCATATTTCACAGTTGCCTTCATATTCATATACTATCTT ATTAGGTAAATCAATTTGATATTACATTCACTTTTTGCTCTGCCATGGTTGAAATGAATATCAATTGAGATGAAAATTCT TAACCTCTTTAGATCCTGACTGTAATTATATTACAAGATCTTTTACATACTTTAATAGCTACATGAACAGGGTCAGCTTT AAGATAAAGCAAACTGTCAAACTATCAGAGTCATTGGTTTTACACTGATAATCATGCTTGTGCAGAAGTGCTGTTGAGTC TATATGTTAGTAGTTATTGAATACAGTTGTTGGCTCTTCTTGACATGTATTAATTAAATTGTGTTCGTTGGACACTGGAG TTGTCTTGTGTTATCATGTTCACTTGAACACTTGTAGTCAATAACATGAGATAGATGTTTACAACTCACTGATACAAAAC TAGCTTTTGCTTTGTAGGATGCTTGGATATTTTACACTTGGATGAAGCGCGTTTAGTTAAAGCTGATTCGATTGTATGAT GGATGGTTGGAATTAAAATCATTTGGTCCTGTGCTATAACCACTATATCTGAGATGGAGATGGTTTGAAAGTCACTTAAA AGAACGTAGAAACTTACTACATATATGAAGCTTAGCAAAAGAGTATGTATACTTTCTCTCTTGAACTGGTCCTGTATCAA TTTTTGCACATGTAAATTCCAGGCATATGAATTGATTTAATTCATTGGGTGGTAATTGTAATTTTTGTAACCAACGCTTC CAAAATTTACCAATGTGATGTATCCCAGATCAGTTGGGATCAAATGTACACTTACATTCATGTTTGGTTTCTAAAAGTAA AACATGTTTTAAACTTCAGGTGGATGGAATGCAAATAATTATCATGAATTTTCAAATCTGACTATAAAACCTAAAATCCT TAATGGGGTACTCATAGGATTGTGAATTTGTGATGGTCTTTCCATTCATCTTTGGTTAAGTCAATGTTATAAAATTCAGA TGGGTGATTGGTTCGGTTAAGGGTTTAGGTCAATGAGTTACTACTTGAATTACTCCCTCCGATCCTATTTATAAGCATGA AAGAGAAGAAAAATCTTGGTCCTTTTTAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0007000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTTACAGAAGAGATAATCGCTCCTCCAGGTCATCACTTTTAGATGGTCTTGATAGTCTGGAGGAGGGTGGCTTAAA GGCTTCTTCCTCTTACTCACATGAAATTAATGAGCAAGATAATGATAAAGCTGTGGAGAGTTTGCATGACAGAGTTACTT TTCTAAAGCGATTAACAGGTGATATACATGAGGAGGTTGAGAGTCATAACAGTTTGCTTGATCGAGTGGGTAGCAAAATG GACGGATCAAGGGGTATGATGTTGGGAACCATGGATCGATTCAAGAAGGTTTTTGAGAAGAAATCGACAAGGAAAACGTG CTCCCTGGCAGCATATTTCACAGTTGCCTTCATATTCATATACTATCTTATTAGGATGCTTGGATATTTTACACTTGGAT GA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0007000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSYRRDNRSSRSSLLDGLDSLEEGGLKASSSYSHEINEQDNDKAVESLHDRVTFLKRLTGDIHEEVESHNSLLDRVGSKM DGSRGMMLGTMDRFKKVFEKKSTRKTCSLAAYFTVAFIFIYYLIRMLGYFTLG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 108 108 - –
PANTHER
PTHR12791
1 125 125 1.0E-59
IPR039897
PANTHER
PTHR12791:SF36
1 125 125 1.0E-59 –
SUPERFAMILY
SSF58038
32 97 66 2.88E-13 –
ProSiteProfiles
PS50192
35 97 63 12.771
IPR000727
CDD
cd15853
38 96 59 3.06906E-19
IPR039899
Gene3D
G3DSA:1.20.5.110
42 106 65 7.3E-13 –
Phobius
TRANSMEMBRANE
109 132 24 - –
TMHMM
TMhelix
109 131 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
133 133 1 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0015031
Biological process Protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0030173
Cellular component Integral component of Golgi membrane The component of the Golgi membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0007000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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