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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0008000 |
| Transcript ID | LotjaGi6g1v0008000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-related protein 2/3 complex subunit; TAIR: AT2G33385.2 actin-related protein C2B; Swiss-Prot: sp|F4IVU1|ARC2B_ARATH Actin-related protein 2/3 complex subunit 2B; TrEMBL-Plants: tr|K7LJ90|K7LJ90_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0008000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1581741..1587741) extracted from Lotus japonicus Gifu genome v1.2.
CTGTGTATTTGCTTCAAAGGTTACCAAACATGATTAAAACACTGGACTTACATTTTACTCAAAGTCCATACATCCAAAAA ACAGTTGAAAGGTCTCGAATTGTATGTGTTAGTTCACTTTTAACACAACTAAATATTCACACAATCTCAGAAGGAGAGAA GAAAGAAGAGAGTTTTATCAGAATGGCATGCATAGATAGAGCATCCCCTGCTCTGAATCAAATACTGCTCAAGCTGTACC GGTAAGAAAGTTTCCATATATATATATATGAAAGGAAATGAAGGGCCGGGATACAGTTTTATTAGACACTCTTCCGACAT ATGCATTAGTGGAGGTTAAAAACCCCTGCTAATGTGTATGTCGGAAGAGTGTCTGATAAAATATGTATGTCCACATATCA TTACTCAACAAGGTAAATTGTAATTGGAAACCTCTAAACAGCTTTTATGAAACATTCTTAACTGGTTTCTTAAGTGGTAA TCCTCGTTTAGAAAATAGCAATATTGAGTGCTTGTCTTCCTCATGACAGTGCTGAGAAGCCAATGGAGATTGATCACCAC TTACATGAATTTGGGTCTGTGGAGTACCATATTCAGGTAAAATTCTCAACTTGCTCAAACAAAATAAAATAGCCACATAC TTTTTGTTATTTATCATAATCTTCTCACGTGGAAACATCCTCAGATTTTTTCACTGTAGAATGTATCTATCTCACTCTCT TCATATGTAAAAAATAAGTGAGATCTTTAAACATTTATTGAGAAAGAGATAGACATAAAGTTTCACTTGACATGGTCAAT CCTATTCTGAATCAACATATAACTCAACAGAAATGCATAATGGAGGTAGCTAGAGCTATTTCCACTGTTTCAAGCAAAAT ATCAATAGTTGACCAGTAATGCAGATTAGTTTTCGACACAAAAAATAATCATATACGACATGGTACATGAAAGAAATTTT ATATAAATAGAGGTTGTGCATAACTAAGGTTCTTCTCAGTGCCTTAATTTGTTTGTCTGGAAATCTTTAGAATTGTTAAG GATTTCAATTTGAAGTTTAAACAAACACTTTGAGTAAGATTTTGATTATTTCCATTTTACTTTACAGTCTGAAGCCTCTA ATCCACTAGTAGCCTACTTGTCAATTTCAATCCCACCTCTTTGCCAAGGAGTCCTAACAAATGAACTTTCTCCAAACACC ATTGAAATGGTAAAGGAACTTTGTCCTCGTGTTATGGAAATTGCAGAACCAGCAAGAGAACGATATCAGCTTACTCTGAA GCTTGACCTCAACCAGATTCCTCAAAGCAAAGGTTTATTTCCCTTAATTAACTTGCAGCATGGTTGCCAACCCTCCATTC AACTCAATTATCATATAGTATAATTGGTGATCAAAAACATTTCATTCATAAACAGCCAAAGCAAAAACAATGAAAATAAG GGTACTGCAAGAGTATAAATTTAAATGAACATTAGCTTGCCCATCTAATGATGCACAATTCTGGTGCCAGACTATGTCAA GGTCATTAAGGAGATTTCCACGGTTCAATCGGCAATTTTGAGTTCACAGATGAAAGAAATACTGAGGAATGTGAATACTG ATGATGCAGTTCAGGGGATGTACAAACCCCTCAAACTAGTCTATCATCCAAGAGAACCATTTTTTGTCATCAGACAGGTA ATTCCTAGTAACCAAATCATTGAACTTGTCATGAAAATCACCACAGTAGGAAAAAAGCAGAAAATTTCAACAACCTAGTA ATCAAAGACAACATCTCACTGGGTCTCTGATCTGTTAAAGTTGTTCATATTCCAATGCTTGTCCACACTGATCAAATAAT ACATGCTGCATTCAGCCACAGCGAATCGTAGCAGTTTTCCCGATACGTTTAAGAGAAAAGTCAGACGTGGTTATTGCAAC AGCTTTCTTTCAGGTTTGTAGCTGAGAAAGCACAACTAAATTATTCATTTTCAACTCAATGTGCTTGCAACTCATTTGTT TACAACCTTTGACAGGAGCTGGTGGATGTTGGGAATTCAGATAAATGGGCCAAGGCACCACCTTGCACCTGGTCAGCTAT TCCTCCACCAGAGTTGAGAGGAGAAGCTTTTGAGGATTTGAGTACCAATGGAGGGTTTTTCTCTTTTGGTAAACTATTAT CCTCCATCAATTATCCCATTAACTACCTCCATACAAGCCATAAACTGATGACACTAAGAGCCTGTTTAGATATGGACCAA AAAGCACTTATTGGAGATTATCTACTAGAAAAAAACACTAGAGAAACTCCAATAAGTGCTCGTTAGTCTGCAGCCAAACC GATTCTAACACAGCTTTGAACTCCCAAATTTAAACAAAATAAGATCAACAAAAGAATTGTTGAGTAAGATAGTTCCAATG CCTCTATGACTAACATCTTGATATTTAACAGATATCTCTTCTCGCCATGTTGAAGGCAACAGGCTAGACAAAACAGTCTG GAATCTGTTAAATTTCAATGCCTATGTTAGGTACCATGTAAAGGTAATATGAATATCAATAGCTCTTTTTAATGACTACT TCCCATTGAAACTGAATTTCTGACATCTTTGACACACATCTGTGCTACAGAGCACCAAAGGTTTCATTCAACGAAGGATG AGGAAACGCTTGGAAAACTTGGTTGAGGTAAGAGGAAATTGAATCACAACATTAAGTTCATTGTTTGAATAAAGACTTGG TATGCTCAAAGTTCCAACTAAAATGCATTTCTTATGCCAAGAATTCATACCGTTTTCGTGACAGACAGAAATTCAGCAAA AATAGCTAAACCTAGCTAGATAAGTGTTGATCCTGTTTTCCTACATGCAGGTCCTGCACCATACGATCTCAGAAGAAAAG AAACAAACCCAACAACATCAAGGTTTGCTTTCTGCTAAGACATCTCAATATTGATAATAAGATTTAGGAATTAAGGAGGC AACCTACACTATGAATTAGTTTCAGAAATAGCCCTTCAAGGCTATACTAGTAATATTTGTTTATACTAAACTAAATACCA AAAAATTGTTATCCACTTTGTATTCATAGATATGAATGAAAGCAATCTAGAGTGAGAAAATGAGAAGTTTTCCTGATAGC ATGCCAATTGTTCAATTACAATCTCTTTTGTACGTGCAGGATGTAGGTATTCAAAGAAACTAGTAAGATCATCAAAATAT AGCATCCTGAAACAAAGATGGGGCACCTTCGGCAGAAAGTTAAAGAGGAATTTCCGACTTAAAATTCATGGTTTTACACG ATTTCGTCAAAGATGGTTAAGGTTCCCAAAATTTTCATCACGATATACAAAATTGGACTAGTTTTTTGTTCTTTCTGAAG CCATTGTTTCTTTGTGTAATATATGGACTTCAAGGCTTCAACTTTGGGGGATTGGCCTGGAAGATCCTCACTGCACTATT TTATCATGTATATTGTATAACTATGAAATTTATGATTTTCAACTACTTGATTATAAGCAAAAGGGACAGTTTAAAAATAT TGTGATGGTGTAAGTGTTAAGTCAATGCCAAACTATCATAGTTAAATGTTTTACTAGTATGTTTGACAAAAGATAGTTAA ATACTTCGAAGAGGGATTCCATCTAAATGTTTATTTGGTTGGAGTATCAAACAGAAAGTACAAGATGGAAGAGTGAAATG CTACAACAGATCTCTTACCTCACTTTCAAGATTTAATTACTGTCATGAATCCATGTATTCTTACTATAACACATTTTCTA CATCCATGCTTGATATAATTATACTTGAAGCAACAAAATAACTCTGAACAGTTCTCAGTTCTGCATGAAGTTCTACCTTC ATCTATTTCTAAAATTGAGGTGTGTAACAATCTACAGCAGCCAAATTTTTCTGCCCCATTTCTCACGTAAATATCTGCAA TAGCAGCAATACTAATGCCATTCACATTAGAAAATTTAGCAGACAGCCTCACGTCCACCAGCAATGTACTCTAGAAGTAA TACCAATCATCACTCAGCACCTTAAGATCGCTAATTTTCATGAACCAACTCTCCCAAAGCTTAAATTGTTAGATGAAAGA ACATAAATAATTTTTATTTATCACATCTCTAACACACTCCCTTAAACAGTATGTAATAACATGCTCCTTCATTTAAGAAC CCTTCAAACTTACGACCCACTTACTCTCTAGTCACAACCTAAGATTACAGCTCATCCCGGTTACTCACTCAGAGCCTATA AATACCAAGCGTCCTCATTATGAAGATACACTCATTCTCTTTCTCACTCTTCATCCTAATGTTATTCCTTAAGCTTGGTA CTGGTATGCATTGGAATGAGACCACCGGAGAGGACCAAGACCTGTAAATAAGAGGCTGGAATTCGAAGGATCTTATCCCC AAATACCTCAGATACAACAAAAGGCATGAAGGTTCAATACTTCAATTTAAAAGATATGGCAAAAGATGCCTGTTACCAAG CTTATTCCAAATGCAACGCCTATAATTTCCATTGATTGTAAACATATAATGTTCAAAATATCTTGACATGAAACATTGCT ACAAAGTCAGTTCAACAACAAACTAAAGAAAGGTTGGTAAGCACTGCCTACCTGGCAGGTTAAACAACCACACTAATGAT TCACATTGCAGACTTTCCTTCTTTGATTCTATTTCTACCAAAAAACCATTCATATTTCACTCCATCTCCAGCTCTGGAAG AGGACGCATCCGCAAACTCCCCGATTCAAGCTCAGCTAGCAATGGCCCCTTTGACTCCCCACATCTCAAATTCCGGTTAC TCGCCAACACCCCAAACATTCCAATAGCCAAAACCAGAACCACAAAAGCATGCACTGTGAACAAAAACTGCATCATAGCA ACACCTCTAAAACTATCCTCATCAAGATCACAATGCATATCAACAGTCTCCTGCTGAGGGGGCAAAAGTGAAATCTTTTG ACACCCTTTCAATCCAAATGCATCAGTATACAATGAAAGACCAGTTTGCAGCAACCAAGTGCCCTTGAAAACCAAACCAG AAGACAACAAAAACTCAGCAAAAAAAGCACCAGGCTTAACTGACAAGTAAAAGCAAGAAGCAGCACAAGCAAGAGTCAAT CCACCCAACAATCCATACACAATGCCAGAAAGACCTGAACTTCCTTTACCCATCACAGAGTACTCCACCAAAAAAACAAT TCCACCGAAAACAAAAACAAAACTTTCATTCATAAAAGAAGACCCCACGTATTCATAGACAATGATCAATATGATGAGTG CCCAGAAGGCCAAAACCGAGAGAGATTGCTGGAAGAATGAGAATCTGTAAGTGGGGTGGCCAGAAAAGGAAAGGAAGAAG AAAAGCTCTGAGAATGAAGCGATTGGCAATGCTATGAGAAGAATGTAGAGATCAAGATTCTTCCAGCGTGGGTCAGCGAA ATACCAGAGTTTGGATCGGAAGTGGGTTGGGTTTTGGAGGTAGAGAGAGGATGAAGAGAGTAAGCGACGAACGCCAACGG GGAAGAAGAGGAGAAAACCTGAGAAATGGGTTGCCACCGATGCCATTTGTTGTTGAGGTTGTGTTGATGTTATGCCGCCA TGGCTTCTTCCTCTTTCGTTTTGGTACTCACAGCTAAATGGTCAATTTTGAATTTGGTCCCTGAAAATGTCATTCATTGA CTTATTGGTCACTGAGTCGCGCAAGTTAGTCCTTAAATGAGGCAAATATCGGGTAAGAAAAATAAAAAGTGAGGAAAGCA CTTCATCAAGCTCGGTGTTAGTAACTTAGAGGGGGGCTTATCGGAAGAAAATCCATTAATATTTTGTCCTGAAAAATGTA GAAAGTCTGGCCATGTAAAGAGAAATTATCCATGTGGAGTAGTATTAGAAAAAGACTATAAGATAAAAGAAATGTCTCCC TTGTTATGGGAGTGCATAGAGTGATCTTCTCTAAAATATAAAGTGTATTTCCTTATGGTATATTCATTATACTATGGAAA A
CDS sequence (LotjaGi6g1v0008000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAAAACACTGGACTTACATTTTACTCAAAGTCCATACATCCAAAAAACAGTTGAAAGGTCTCGAATTGTATGTGT TAGTTCACTTTTAACACAACTAAATATTCACACAATCTCAGAAGGAGAGAAGAAAGAAGAGAGTTTTATCAGAATGGCAT GCATAGATAGAGCATCCCCTGCTCTGAATCAAATACTGCTCAAGCTGTACCGTGCTGAGAAGCCAATGGAGATTGATCAC CACTTACATGAATTTGGGTCTGTGGAGTACCATATTCAGTCTGAAGCCTCTAATCCACTAGTAGCCTACTTGTCAATTTC AATCCCACCTCTTTGCCAAGGAGTCCTAACAAATGAACTTTCTCCAAACACCATTGAAATGGTAAAGGAACTTTGTCCTC GTGTTATGGAAATTGCAGAACCAGCAAGAGAACGATATCAGCTTACTCTGAAGCTTGACCTCAACCAGATTCCTCAAAGC AAAGACTATGTCAAGGTCATTAAGGAGATTTCCACGGTTCAATCGGCAATTTTGAGTTCACAGATGAAAGAAATACTGAG GAATGTGAATACTGATGATGCAGTTCAGGGGATGTACAAACCCCTCAAACTAGTCTATCATCCAAGAGAACCATTTTTTG TCATCAGACAGCCACAGCGAATCGTAGCAGTTTTCCCGATACGTTTAAGAGAAAAGTCAGACGTGGTTATTGCAACAGCT TTCTTTCAGGAGCTGGTGGATGTTGGGAATTCAGATAAATGGGCCAAGGCACCACCTTGCACCTGGTCAGCTATTCCTCC ACCAGAGTTGAGAGGAGAAGCTTTTGAGGATTTGAGTACCAATGGAGGGTTTTTCTCTTTTGATATCTCTTCTCGCCATG TTGAAGGCAACAGGCTAGACAAAACAGTCTGGAATCTGTTAAATTTCAATGCCTATGTTAGGTACCATGTAAAGAGCACC AAAGGTTTCATTCAACGAAGGATGAGGAAACGCTTGGAAAACTTGGTTGAGGTCCTGCACCATACGATCTCAGAAGAAAA GAAACAAACCCAACAACATCAAGGATGTAGGTATTCAAAGAAACTAGTAAGATCATCAAAATATAGCATCCTGAAACAAA GATGGGGCACCTTCGGCAGAAAGTTAAAGAGGAATTTCCGACTTAAAATTCATGGTTTTACACGATTTCGTCAAAGATGG TTAAGGTTCCCAAAATTTTCATCACGATATACAAAATTGGACTAG
Protein sequence (LotjaGi6g1v0008000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKTLDLHFTQSPYIQKTVERSRIVCVSSLLTQLNIHTISEGEKKEESFIRMACIDRASPALNQILLKLYRAEKPMEIDH HLHEFGSVEYHIQSEASNPLVAYLSISIPPLCQGVLTNELSPNTIEMVKELCPRVMEIAEPARERYQLTLKLDLNQIPQS KDYVKVIKEISTVQSAILSSQMKEILRNVNTDDAVQGMYKPLKLVYHPREPFFVIRQPQRIVAVFPIRLREKSDVVIATA FFQELVDVGNSDKWAKAPPCTWSAIPPPELRGEAFEDLSTNGGFFSFDISSRHVEGNRLDKTVWNLLNFNAYVRYHVKST KGFIQRRMRKRLENLVEVLHHTISEEKKQTQQHQGCRYSKKLVRSSKYSILKQRWGTFGRKLKRNFRLKIHGFTRFRQRW LRFPKFSSRYTKLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 52 | 400 | 349 | 7.6E-168 | – | |
| PANTHER | 52 | 400 | 349 | 7.6E-168 | ||
| SUPERFAMILY | 52 | 175 | 124 | 1.06E-15 | ||
| Gene3D | 52 | 182 | 131 | 2.6E-12 | ||
| Pfam | 140 | 342 | 203 | 1.6E-32 | ||
| Gene3D | 183 | 361 | 179 | 1.5E-47 | ||
| SUPERFAMILY | 185 | 341 | 157 | 5.1E-45 | ||
| Coils | 329 | 349 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Arp2/3 protein complex | A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments. | ||
| Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
| Biological process | Actin filament polymerization | Assembly of actin filaments by the addition of actin monomers to a filament. | ||
| Biological process | Regulation of actin filament polymerization | Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. | ||
| Biological process | Arp2/3 complex-mediated actin nucleation | The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins. |
Expression pattern of LotjaGi6g1v0008000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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