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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0011900 |
| Transcript ID | LotjaGi6g1v0011900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine incorporator; TAIR: AT2G33205.1 Serinc-domain containing serine and sphingolipid biosynthesis protein; Swiss-Prot: sp|Q54UF8|SERIC_DICDI Probable serine incorporator; TrEMBL-Plants: tr|I1NEJ3|I1NEJ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0011900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2281541..2288742) extracted from Lotus japonicus Gifu genome v1.2.
GTCCCATCTAACTTAAATTTTAAGATTGTATATAACTTAATGACAGGAAGGAAACTTCCAGATAAATGAGCTGCACCTAA AATATGGAAATTTTACCAATGATCTTGCACAAGTCAAAAGGACAAGACAAAAGAAATATATTTGATATGTAGCAGTGTGC AAAGTGTTAGGAACATTTGCCGCACATGGCATGAGGGAGCATCATGACATCACAAGTGTGGACACCAACAAATTGCTTTC TTTGAATCCAACGGATTTGAACACCAGGTGCATTATATTATCATCTCAATGTTTTGCTTCTGAAGCTGTGGCTTGGGAGC ACTTCTTTTCAACTAGTACAAGAAGGACCAACAGCTTCATACTCTTGCTCTAGCTTCAGAGTGTGCACCCTTGCCCAAAA TATATAAGGTGAGAACTTTGTGGTTATGTTCATGCATTGATTAACTGACATTTCTTGATTGAGTTCACAACATTTGCACC ATCTCTACTTAAAACCATAGGTAAATTGCAACTCATTTCAGTATTTCTTGTGTGACGAACATCATTTATAAGTGGGAATT TGGTCTCCATTTTGTAGTTTGTAAGATGAACACCACTGTTTGGTGTTTCCAGCTCTAAGAAACTGTCTTTGAACATAAAC CTGAGCCAGGTTTCAACTTTCAAGTGACATTTGGTCATTGCAGTATTGCTATACATTTTTATACTTAGATGTAAGTATTT AATGCAATTAGCGCAAACTGAAATATGTGAAAGAAAATAAGAAAGATAGAAAACTAAGTAAATTCAGATTCTCAGCAGCC AGAGAAATCCAATATTCACACACCTAAGCATTTTGAGCTGTCTGATCTTAATTGAAGGATTCACATTTTAAATTGTAATA AGAAACTTAGAATAGTAAATGCGAATGAGTCTTAGATGGCTCAAAAGGCTTGAATCCGGGATTCCCCTGACTGTTGCGGA GAATATAAATCAGAAAACCAAGTACATTTAGAAATTAATATGCTGTACAGTTAGTTGTAGAGTCTATTATATTGATTGCA AAACAAAACTAGGGAGATCAATGAGGAATCATTTGTACTTGTTTGATAAAGAGATGTCGGTAGTGGTTAATCATGTGAAG TTGTTTATATTTGAATGCAGAATGAGTGCATCTGAGGTAACAAGTGAAGCAGCAGCAGTAGTACATATTCAGGTAAGTGA CAGGCCGAGCACTGAGGAAGTAACAGCTTCATTGGATGATTATGCAGCAGAAAGAAAGAAATCGCTGCAAGCTCGCTATT ATTTTGGCATCATATTCTTGATAATGAACCTTGTTGCCTGGTTTTTCCGCGACTATGGGCAAAGCCTTCTTCTACCTTGG GTTCATTGTAAGTCAATATACTATGCACTTCCAAAAAACCGTTTTTCTCACATCTCTAAAATTTGATTACTTACACTGTC AGTGCATCAAAATTAAACTAAAAAATTGCTAGGTGAGTATAAGGACAAATTGAGAAAATATTGAAAAATTCAGAACCAAA GGAATGGATCTTACATAGGTAAAAAGAAAATCTCCAAATTATAGTGCCATTAAATGTGAGAGACTGAGAGTAACTGCTTT TGGATATTACTTCAGTTATTATGCTAGCTTGAAACCTAACTCTTTCTTGTTTAATTTAGTTACATTTTTTTAAAGAAATT GATTTGTTAAGCATGGGAAACCAGAACTTATTATTTTGACTAATATCTTGGAATAAAGTTAGGACTGTATCAGTTAATGA AACTCAAGTGAATGATATTATGGCCATTTGTTATCTGTTGTGGTAATTGATCCCCTTTTACTTTGTACAGATATCAAAGT TTGTGGAAATGAAGGAGAAGATTGTTTTCATTCATTGGGAGTTCTTCGTGTGAGTTTAGGATGCCATGTATCCTTCACCT ATCACTGATCAGTTTTTACTTCATGAGGAATCTTCATATACTACTGCCACTGAATCTCTAGATATATTATAACCTAGAGT TATTGATTAGTCGTGAGAACTATATCTTCCTTAACGATGAAGCCAGATATTTTTCTTGATTATGTTTCTCACCACAGTCA ATACAAGGAAATTATGTGAAGGTAGAAATTCATGGCACTCTGGATGGTGGGAACTAAAGTCTATTTTATTGCTAGTATCA ATGACACTCCCATTCTTATTCCCTTCGGAATTCGTTCAAATATATGGTAAGTTTCTATTTTCCCCATAATTTTGAAGTTA GTACAATGCCTTAGGATCTTTAGTCATAGTTTCTGTGAAATGCTTCTTAAATAGCAATTTTGGTTTCAAAAAAGAAGTTC TTAGTCAATTTTGAAGAGCAGTCAATTTTGCAACTATTTGATTAGGAATCTGTCCTTTTGCTTGAACCAACTCAAACGTG ATTTCACACTCCTCTACTCTAGCACAAATGGAGAAGCAGGATTTCATACTGTTGAGTTCAACGTAGATCAGTGTTGAGTT TTAGTACTCTTGTTTTTCATTCATTGAAAACAAAGGTCCATTCTTTCATTGCCTTAACTTAAATATCATTGAATGACAAA CATAACACACCTAATGACCTTGCAGGTGAGATTGCTCGTATTGGTGCAGGGTAAGTTTCAGATCCTTCAGAGAGAGAGAG AGAGAGAGACTATCAATATATGTTACTTACATTACATGTATGGTTCATGTTTGCACAGGATTTTTCTTCTTTTGCAACTT GTGAGTGTCATTCATTTTATCACTTGGTGGAATAAGTACTGGACTCCAGATGAAGAAAGGAAGCAGAGGTACATATTAGT CTTTCTGTAATAATTCATAGATCATCTAATAGTAAAATTTAATACCTTATTCTGAGGATAAAGACAACCTAATTGAGTTC TAAACTATATTCTGGAAATGTTATTCTAGTTTTCCATAAGTAGATTAGAAAAGACTGAGGTTTTGAAATTTAAAAGATCA TGCACTGGATGGTTCAAGATTTTCAGGTGATATGGAAAAAATCCATCGTGGTCATGGTCTATATCATTTTCTAAGAAGAA GTATATCAATTATTTTCCAAATGTTTATTACATAGAGTGACAAAGAGATTTAATTTTTTTAATCTGAGAGTGTAATGACT ATGTTCTGTGTGGAGATAAGGCTGATCAGCAAAGCAAATTCACACTATAACACTAATCTGAAAAGCTTGAAAAAAAATCA AAATTAAACCTTGGTGGTTGTTATGAGATGATCCATTGTGTTACTATAAGTAGCTTGAAAAGAAAATTCATATTATTAAC ATTATAGAAATATTCACTATTTTTTTTTTTTTTGAAATCGAAATATTCACTATTAGAGTAAGATGACCTTAGTGTAAGAA AAAGAAAAGGAGGAAAGACTACTGAAATGAGAAATTTCAATTATTTTACCACACGTGCTACATGATTATCATCTATTTAT ATCAGAGTAGTCCCTAACCATAACCTATTGGCTCAATTAAAATACCAAATGAACATATGCTAATGGTAAATATTTACCCC TTACATAGCTTAAGTAGAGGTCTTGGTTCGAGTCTCTGTGAATCCAGCTGCGTTAAATATTTGGTAAGGGGAGTTGTCAC CCATAGTTGTCATACCCGGCTCGAACAAGATTGTCTTATTAGAGGATACTTGTGGCTTAAACAAAAAACCATAAAATATC CTCTCACTGAATAATTAAGTCTTTGTATGACATTATTTAACACGAAGACCATTATGTTATGTCTTTTAACCTCATAGCAA TTAATGTCTATATTTTTTGATACATTTGCATATTATTAAGTTGGCACAGGTGCTCCGTTGGACTCTCTATGTCAACTATG TTCTATGTTGCTGCTATATGCGGCGTTGTGTATATGTACACATCATATGCCTCAAGATCTTCATGCTCTCTCAATATATT TTTCATCACTTGGACAGCGATTCTGCTTCTTGTAATGATGATTATATCCTTAAACTCAAAGGTACGCCCCTTTTCTTATT AGAGTTGCAGCAAGTGGTATTTCAATAGTTTACAGTGACAGGAAAAACTCATCCAAGTCTTCATGTCTTGTACTTTCTCT TCCTTTATCAATATGGTAGTCTGGTTTGGAGTTCATTATATTTATAAGAAAGAATAAACCATTGGATCCATCCATCACAA ACATTCATATTTTGCAAGGAATTAAGCATAGTAATTAACAGCTCTAATAAGCTAGTCTTGTTAAAATATCACTAGGACAT GAACAGATATAATATGAAGCTATCCTAGCACTTTAATTTCCACTTAAACCATTGACATATATGTTCTGTCATGATTGCTT AACTACTTCAGGTTAACAGAGGCCTTTTATCCTCTGGAATCATGGCATCCTACATTGTTTTCCTTTGTTGGTGTGCTATC AGAAGGTTAGGATTCCAACCCATACATCTCTATAACGATTCATTGATTCTTCTTAAAAAATCTCATTCTATGTATCATCT ATTCAGTTTCAATTTTGTGAGTTATATATGTTAGTGGTAATTTTTTTAGGAAATGTAAAAATACAGAACACAGTCAAGTC CTTTGTTAGTGTAGTTGAAGTTGTTATTCTGGCTGGTAACTTAATTTTCAAAAACGGATATATGATGTGATATGCTTGAT TTTGACTAGAATGAATAGCCACGTTTGCCTCAACCAAGGAGTAAGATAAAATTTTCTTCCCAATGTTGTATACTTGAGTG ATTTTAGCATATATTTTTTGGATGAAGATTATAGTGAAATTCCTTTCTTATTTTGCAATGTAATTCACACAGCTTTTATC AACTTAAAAGATTTAATGTTTGAGTTTTGAAGTTTCTTCTATAGATGGTAAGTATATTTATCAATTTCCATCATGGCATT TCAGTGAACCTGCCACCATAAGATGTGAGACTCAAAACCAAGAAAAAGGAAATGGTGGTTGGATAACTATAGTTGTAAGT TTTGCAATCTATCTTTATGTTAAATTTGAAATTCCTTACTTTACTTTCTCTAAACTTCCCTGGAGTTCAGAATCCTTGAG GATTCCAGCTTCTTAAGGTCTTGTATAGGTAACTACTGTGTTAAAAATAGTAGATATTCAGTGAGCGTTAGTATGATGGT CACATTTTTTGAGCTGGTTTCTTCAATTTATAATGTGATGTGAAGTTAATGTAATTAAATGAAGACATGATCCTTTTTAA TGGAAATAAAGTAGCTTGGGATGTATATTTCCATTCCTTTGTATTTTAGGTTTCTTGTGTATGGAAGAAATCCTCAATGG GAGAGCTTAGCCCCACGCCCCCACCAAGATGTGGATGCTCCTGGTTCAAACAAGATTGTCTCGCATTGAGGATACCTATA ATACACCAATAAAAAGATAGTTGATAATTTGACAAAAGATAAACACCTTCTAATATAGTACTAGCTAGGCTTTGTCTCTC TTCAATTGTGAGCACTGTTGATGTATCTTTGTTAAAATCAAAGCAAACTAATTCATCTGTACCATCTTTGGATATGTGGA TTTTTTTATGAATTTGAATTAGTGTATATACACAATCTCATGCCATGAATGTTTCTTTACATTAGTATTTTAGTCCCTCA TCTTTTAACTTCATACTGTATATTATTTCTCCAAATTACAGGGCTTCCTTATTGCTATATTTGCAATTGTGATGGCAGCC TTTTCCACAGGCATTGATTCAAAATGCTTTCAGGTGAATTACCCTTCTGAGTCTTATATCTCCATTAAAATCAAAAGAAA TATTATTTTTCTGCTTCAAAATCCCATTCTCAATTCTGTTTTAGAAATTAGGGGAGTTCTAGAACTCCATTCTTTGATCT AACAAGGGCAAATTATTTCCTCCATAAAAAAGCCAAACGTTAAATCACATTATTTTCATCATATTCTCAATATCCAAACA TGAATTGTTTAATCTAAGAGTGGTTTGAATCAACTTATTTTTCCTCAGAATCAATTATTGCACTCAGAAGCTTCCTCATA GTTGTAGATGAATTTCCAAACATGCACTAAGCCACTTCCTTTCCACGACAGGTGGAAACATTGTGATGATAAAAATGATA TTGATCAATTCCCCAGATATTGAAATGAATTTTTTATCTCCTTTCCAGTTTTCCAAGAACAAAGTTGAACATGAAGATGA TATTCCTTACAACTATGGTTTTTTTCACATGGTATTCTCCTTGGGAGCTATGTACTTTGCAATGTTATTCATCAGTTGGG ATCTGAATAACTCAGCCAGGAAGTAAGGAACATAATGCATCATAGTGTATTTAAGTGCTTTAGACATTATGATTTTTTAT GCCTTATATTGTCTTCCTTTGTATAAATCATGCACATTTCAAACCCCTAGGTGGAGCATTGATGTTGGTTGGCTAAGTAC ATGGGTGAAAGTTATCAATGAGTGGTTTGCAGCAACAATTTACAGTAAGTGAATGATTATTTGTTCCAGAAAAATATTTT TTTGTAGATAAATAACTTTGTTACTAATCTTGTTTGTATACTAATAATGCAATTGTTATTGCACCCATTTTTAACATATT TCCATTGCTTTGATTGTTTTTCCTTTTTTTTTATTGCTGTAAACAGTTTGGATTCTGATTTCCCCAGTTGTGAGACAGAA TAAAGTTATAGGTGATGATAGAACTGTGCAGGAGATGACTGACTCAGTGATGGCATGACTGAAATTATCAATATTCTTTC CTTTTTTAATTTTTTATATTCCTTATATTCTTCAATTCAGTTAATCTCCAATGATTGAAACTTGAAAGGCAAAACCCACG AATGAATCAAAATAATAAAAGATTTTGCTTTGGGTTAAATAGAAGACTGAAATATGTTTTCCACGCTAGAAGCACCGGTT TTCATTTCTCATTTTATCCTTGTGACTAATGCACAAGCACTGACTTAATCTTGTATTATTATTGTTTTTATTTCAGCACT AACTTTGTCTTGTTTTTTTTATTAGCAACTTTGTCTTGTATTATTATCCTCTTGTAAAAATACTATAAAACAAAAGGCCC GCACACTTTCCTGCCTTTTATAGGCAATTGTAGTATTTAAGGCGTCTTTGAATGGTAGTCCTCTTTTATGTTGGACCCAT ATCTTAGTTTTGTTTTGTAAACAAACTTTTTTTTAGATGAAACGAAACATATATTAAGAATTCAAAGAACTCAATACATC CG
CDS sequence (LotjaGi6g1v0011900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGCATCTGAGGTAACAAGTGAAGCAGCAGCAGTAGTACATATTCAGGTAAGTGACAGGCCGAGCACTGAGGAAGT AACAGCTTCATTGGATGATTATGCAGCAGAAAGAAAGAAATCGCTGCAAGCTCGCTATTATTTTGGCATCATATTCTTGA TAATGAACCTTGTTGCCTGGTTTTTCCGCGACTATGGGCAAAGCCTTCTTCTACCTTGGGTTCATTATATCAAAGTTTGT GGAAATGAAGGAGAAGATTGTTTTCATTCATTGGGAGTTCTTCGTGTGAGTTTAGGATGCCATATATTTTTCTTGATTAT GTTTCTCACCACAGTCAATACAAGGAAATTATGTGAAGGTAGAAATTCATGGCACTCTGGATGGTGGGAACTAAAGTCTA TTTTATTGCTAGTATCAATGACACTCCCATTCTTATTCCCTTCGGAATTCGTTCAAATATATGGTGAGATTGCTCGTATT GGTGCAGGGATTTTTCTTCTTTTGCAACTTGTGAGTGTCATTCATTTTATCACTTGGTGGAATAAGTACTGGACTCCAGA TGAAGAAAGGAAGCAGAGTTGGCACAGGTGCTCCGTTGGACTCTCTATGTCAACTATGTTCTATGTTGCTGCTATATGCG GCGTTGTGTATATGTACACATCATATGCCTCAAGATCTTCATGCTCTCTCAATATATTTTTCATCACTTGGACAGCGATT CTGCTTCTTGTAATGATGATTATATCCTTAAACTCAAAGGTTAACAGAGGCCTTTTATCCTCTGGAATCATGGCATCCTA CATTGTTTTCCTTTGTTGGTGTGCTATCAGAAGTGAACCTGCCACCATAAGATGTGAGACTCAAAACCAAGAAAAAGGAA ATGGTGGTTGGATAACTATAGTTGGCTTCCTTATTGCTATATTTGCAATTGTGATGGCAGCCTTTTCCACAGGCATTGAT TCAAAATGCTTTCAGTTTTCCAAGAACAAAGTTGAACATGAAGATGATATTCCTTACAACTATGGTTTTTTTCACATGGT ATTCTCCTTGGGAGCTATGTACTTTGCAATGTTATTCATCAGTTGGGATCTGAATAACTCAGCCAGGAAGTGGAGCATTG ATGTTGGTTGGCTAAGTACATGGGTGAAAGTTATCAATGAGTGGTTTGCAGCAACAATTTACATTTGGATTCTGATTTCC CCAGTTGTGAGACAGAATAAAGTTATAGGTGATGATAGAACTGTGCAGGAGATGACTGACTCAGTGATGGCATGA
Protein sequence (LotjaGi6g1v0011900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASEVTSEAAAVVHIQVSDRPSTEEVTASLDDYAAERKKSLQARYYFGIIFLIMNLVAWFFRDYGQSLLLPWVHYIKVC GNEGEDCFHSLGVLRVSLGCHIFFLIMFLTTVNTRKLCEGRNSWHSGWWELKSILLLVSMTLPFLFPSEFVQIYGEIARI GAGIFLLLQLVSVIHFITWWNKYWTPDEERKQSWHRCSVGLSMSTMFYVAAICGVVYMYTSYASRSSCSLNIFFITWTAI LLLVMMIISLNSKVNRGLLSSGIMASYIVFLCWCAIRSEPATIRCETQNQEKGNGGWITIVGFLIAIFAIVMAAFSTGID SKCFQFSKNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKWSIDVGWLSTWVKVINEWFAATIYIWILIS PVVRQNKVIGDDRTVQEMTDSVMA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 45 | 45 | - | – | |
| PANTHER | 20 | 414 | 395 | 8.0E-212 | ||
| PANTHER | 20 | 414 | 395 | 8.0E-212 | – | |
| Pfam | 38 | 325 | 288 | 3.0E-51 | ||
| TMHMM | 46 | 63 | 18 | - | – | |
| Phobius | 46 | 63 | 18 | - | – | |
| Phobius | 64 | 91 | 28 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 92 | 112 | 21 | - | – | |
| Phobius | 113 | 132 | 20 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 133 | 154 | 22 | - | – | |
| Phobius | 155 | 159 | 5 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 160 | 180 | 21 | - | – | |
| Phobius | 181 | 200 | 20 | - | – | |
| TMHMM | 200 | 222 | 23 | - | – | |
| Phobius | 201 | 220 | 20 | - | – | |
| Phobius | 221 | 231 | 11 | - | – | |
| TMHMM | 232 | 251 | 20 | - | – | |
| Phobius | 232 | 250 | 19 | - | – | |
| Phobius | 251 | 256 | 6 | - | – | |
| Phobius | 257 | 276 | 20 | - | – | |
| TMHMM | 258 | 277 | 20 | - | – | |
| Phobius | 277 | 295 | 19 | - | – | |
| Phobius | 296 | 319 | 24 | - | – | |
| TMHMM | 297 | 319 | 23 | - | – | |
| Phobius | 320 | 338 | 19 | - | – | |
| Pfam | 332 | 406 | 75 | 2.4E-17 | ||
| Phobius | 339 | 360 | 22 | - | – | |
| TMHMM | 340 | 362 | 23 | - | – | |
| Phobius | 361 | 379 | 19 | - | – | |
| TMHMM | 377 | 399 | 23 | - | – | |
| Phobius | 380 | 399 | 20 | - | – | |
| Phobius | 400 | 424 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0011900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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