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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0017400 |
| Transcript ID | LotjaGi6g1v0017400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycerol-3-phosphate acyltransferase; TAIR: AT2G38110.1 glycerol-3-phosphate acyltransferase 6; Swiss-Prot: sp|O80437|GPAT6_ARATH Glycerol-3-phosphate 2-O-acyltransferase 6; TrEMBL-Plants: tr|U3TFS8|U3TFS8_LOTJA Glycerol-3-phosphate acyl transferase; Found in the gene: LotjaGi6g1v0017400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3074303..3076266) extracted from Lotus japonicus Gifu genome v1.2.
ACAACAAGTGCATTCACCATGGTGTCTTCAACGTTTCCAGCTGTGAACAAATGCACCTCAATAGGGAGGGAAAAGCACAC AGTGGTTGCTGACATGGATGGAACCTTGCTCATAGGTCGTAGCTCCTTTCCCTACTTTGCTCTTGTGGCCTTCGAAGCCG GTGGCATTTTAAGACTCTTCTTCTATCTCTTGTGTGCCCCTATTGCCGGCATTCTCTACTACTTTGTCTCTGAGGCTGCT GGCATACAAGTTCTCATCTTCGCATCAATGGCCGGCATGAAAGTGTCCTCCATTGAGTCAGTGGCGAGAGCTGTTCTTCC AAAATTCTATTCTGGAGATCTTCATCCGGAGAGCTGGCGTGTGTTCTCCTCGTGCGGGAAGCGTTGCGTGCTCACTGCGA ACCCGAGGATCATGGTGGAGCCTTTCTTGAAAGAGTTTTTGGGTGCTGACATGGTATTGGGGACTGAGATTGGGACTTAT AAGGGGAGAGCTACTGGGATGATTTGCAAGCCTGGGATACTTGTTGGTGGGAAAAAAGCAGATGCTCTCAAGAAAGCTTT TGGAGAGGAGCAGCCAGATATTGGACTTGGAGATAGGCTCACTGATGCTCCCTTCATGGCTTTGTGCAAGGTAACATCAA ATCCTAATTAGCTTTTTGGTTTTATAATCTTAACTCCTTCTTTTTCCGCATTAGTAAGAGTATGTTTTGTTTCAAAACCT AAATAGCTTTTTGGTTTTATAATCTTAAGCTCCGCTTTCAGAATCAATTTTTGGTTGTTTATATGGTACCTCTTTCACAA TTAATTCTAACTCTAAAATTAATTCTTGGATATGAAGTTACAATTGAAAAAAGTTCTAAAAGAAGTGGTTTTACAAAATA TGTAATCCCATCAGATCTAGATTATGGTTCAACACTTATTGGCATACTAGCTCAATTCATGGTAATCTTTAACACATAAA TTTTCATGACATATATATTGGCATCAACCTACCATAACTTTAATTGTGCCCTTTATTCCAACTTTAATATGTATGACAAA ATTCAAACCATCTTATGCATGCAGGAGGGTTACATAGTACCACCCAATCCAAAGGTGAAAGCAGTCACAACTGACAAACT ACCAAAGCCCATAATCTTCCATGATGGAAGGCTGGTGCACAAACCCACACCCCTCCTTGCTCTTCTCATCATTCTTTGGA TCCCCATAGGCTTCCCCTTAGCATGCCTCAGAATAGCAGCAGGCTCACTCCTCCCCATGAAGCTAGTCTATCACGCCTTT TGGGCACTTGGTGTCCGCGTCATCGTCAAAGGCACACCACCACCACCGGTCGGAAAATCCAACCCTCATAAATCTGGTGT CCTCTTCATCTGCTCCCACAGGACCCTCCTCGACCCAATCTTCCTCTCCACTGCGCTCGGCCGCCCAATCCCGGCTGTCA CCTACTCCGTCTCCCGCCTCTCCGAGATCATCTCCCCTATCAAGACCGTCCGACTCAGCCGTGACCGCGCCACAGACGCC TCCATGATCAAGAAGCTCCTGCAGGAGGGTGACCTGGCCATATGCCCGGAAGGAACCACCTGTCGGGAGCCCTTCCTCCT CAGATTCTCCGCACTTTTTGCCGAGCTCACTGATGAGCTCGTGCCCGTAGCCATGGTGAACCGGATGAGCATGTTCCATG GAACCACTGCAAGAGGGTGGAAAGGGATGGACCCGTTTTACTTCTTCATGAACCCTAGCCCTGTCTATGAGGTCACTTTC TTGAACAAGTTGCCCAAAGAGTTAACTTGTACCGCAAGCAAGTCGAGCCATGATGTGGCGAATTACATACAAAGGGTGAT TGCAGCCACCTTATCCTATGAGTGCACTAGCTTTACTAGAAGGGATAAGTACCGAGCACTTGCTGGTAATGATGGCACTG TGGCGGAGAAGCCTAAGGCCGCAAACAAAGTCATGGGTTGCTAA
CDS sequence (LotjaGi6g1v0017400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCTTCAACGTTTCCAGCTGTGAACAAATGCACCTCAATAGGGAGGGAAAAGCACACAGTGGTTGCTGACATGGA TGGAACCTTGCTCATAGGTCGTAGCTCCTTTCCCTACTTTGCTCTTGTGGCCTTCGAAGCCGGTGGCATTTTAAGACTCT TCTTCTATCTCTTGTGTGCCCCTATTGCCGGCATTCTCTACTACTTTGTCTCTGAGGCTGCTGGCATACAAGTTCTCATC TTCGCATCAATGGCCGGCATGAAAGTGTCCTCCATTGAGTCAGTGGCGAGAGCTGTTCTTCCAAAATTCTATTCTGGAGA TCTTCATCCGGAGAGCTGGCGTGTGTTCTCCTCGTGCGGGAAGCGTTGCGTGCTCACTGCGAACCCGAGGATCATGGTGG AGCCTTTCTTGAAAGAGTTTTTGGGTGCTGACATGGTATTGGGGACTGAGATTGGGACTTATAAGGGGAGAGCTACTGGG ATGATTTGCAAGCCTGGGATACTTGTTGGTGGGAAAAAAGCAGATGCTCTCAAGAAAGCTTTTGGAGAGGAGCAGCCAGA TATTGGACTTGGAGATAGGCTCACTGATGCTCCCTTCATGGCTTTGTGCAAGGAGGGTTACATAGTACCACCCAATCCAA AGGTGAAAGCAGTCACAACTGACAAACTACCAAAGCCCATAATCTTCCATGATGGAAGGCTGGTGCACAAACCCACACCC CTCCTTGCTCTTCTCATCATTCTTTGGATCCCCATAGGCTTCCCCTTAGCATGCCTCAGAATAGCAGCAGGCTCACTCCT CCCCATGAAGCTAGTCTATCACGCCTTTTGGGCACTTGGTGTCCGCGTCATCGTCAAAGGCACACCACCACCACCGGTCG GAAAATCCAACCCTCATAAATCTGGTGTCCTCTTCATCTGCTCCCACAGGACCCTCCTCGACCCAATCTTCCTCTCCACT GCGCTCGGCCGCCCAATCCCGGCTGTCACCTACTCCGTCTCCCGCCTCTCCGAGATCATCTCCCCTATCAAGACCGTCCG ACTCAGCCGTGACCGCGCCACAGACGCCTCCATGATCAAGAAGCTCCTGCAGGAGGGTGACCTGGCCATATGCCCGGAAG GAACCACCTGTCGGGAGCCCTTCCTCCTCAGATTCTCCGCACTTTTTGCCGAGCTCACTGATGAGCTCGTGCCCGTAGCC ATGGTGAACCGGATGAGCATGTTCCATGGAACCACTGCAAGAGGGTGGAAAGGGATGGACCCGTTTTACTTCTTCATGAA CCCTAGCCCTGTCTATGAGGTCACTTTCTTGAACAAGTTGCCCAAAGAGTTAACTTGTACCGCAAGCAAGTCGAGCCATG ATGTGGCGAATTACATACAAAGGGTGATTGCAGCCACCTTATCCTATGAGTGCACTAGCTTTACTAGAAGGGATAAGTAC CGAGCACTTGCTGGTAATGATGGCACTGTGGCGGAGAAGCCTAAGGCCGCAAACAAAGTCATGGGTTGCTAA
Protein sequence (LotjaGi6g1v0017400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSSTFPAVNKCTSIGREKHTVVADMDGTLLIGRSSFPYFALVAFEAGGILRLFFYLLCAPIAGILYYFVSEAAGIQVLI FASMAGMKVSSIESVARAVLPKFYSGDLHPESWRVFSSCGKRCVLTANPRIMVEPFLKEFLGADMVLGTEIGTYKGRATG MICKPGILVGGKKADALKKAFGEEQPDIGLGDRLTDAPFMALCKEGYIVPPNPKVKAVTTDKLPKPIIFHDGRLVHKPTP LLALLIILWIPIGFPLACLRIAAGSLLPMKLVYHAFWALGVRVIVKGTPPPPVGKSNPHKSGVLFICSHRTLLDPIFLST ALGRPIPAVTYSVSRLSEIISPIKTVRLSRDRATDASMIKKLLQEGDLAICPEGTTCREPFLLRFSALFAELTDELVPVA MVNRMSMFHGTTARGWKGMDPFYFFMNPSPVYEVTFLNKLPKELTCTASKSSHDVANYIQRVIAATLSYECTSFTRRDKY RALAGNDGTVAEKPKAANKVMGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 4 | 499 | 496 | 2.1E-292 | – | |
| PANTHER | 4 | 499 | 496 | 2.1E-292 | – | |
| SUPERFAMILY | 19 | 217 | 199 | 9.43E-9 | ||
| Pfam | 22 | 200 | 179 | 1.0E-17 | – | |
| Phobius | 37 | 58 | 22 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 59 | 64 | 6 | - | – | |
| Phobius | 65 | 87 | 23 | - | – | |
| Phobius | 88 | 240 | 153 | - | – | |
| Gene3D | 109 | 225 | 117 | 4.3E-13 | ||
| SUPERFAMILY | 214 | 489 | 276 | 1.57E-33 | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 241 | 263 | 23 | - | – | |
| Phobius | 264 | 503 | 240 | - | – | |
| CDD | 279 | 464 | 186 | 2.97856E-23 | – | |
| Pfam | 298 | 396 | 99 | 2.3E-7 | ||
| SMART | 303 | 404 | 102 | 1.1E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transferase activity, transferring acyl groups | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi6g1v0017400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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