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LotjaGi6g1v0017700.1

Overview

Field Value
Gene ID LotjaGi6g1v0017700
Transcript ID LotjaGi6g1v0017700.1
Lotus japonicus genome version Gifu v1.2
Description Myb-like transcription factor family protein; TAIR: AT5G05790.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA; TrEMBL-Plants: tr|A0A0B2QW66|A0A0B2QW66_GLYSO Transcription factor MYB1R1; Found in the gene: LotjaGi6g1v0017700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:3097628..3099000) extracted from Lotus japonicus Gifu genome v1.2.

ATTTCAACTATTTACTCATTTCTACAACTAGTTTGTCTCTCTCTCTCTCTCTCTATCCCCTCGTCTCTTTCCTTTTGTTC AACAATGGCTAATGAAATCGTTGATCCTACAAACTCACCTCCATCACCACCCAGAACATCATCTAATGCACCAATAATCT TTCTCAATTTTGGTGATTCTTCTTCAACAAATGTTCAACTACAAAGTTCTCCCATGCCTTTATGGTCTAATATGAACCTT ACATACTATCGTCAAAATGCTTTATGGCCAGCTTCATCTCACATCTATGAGCCTTTTCACTTTCCTTTCAGTTTCCAGCC TAGCATGGACGGCAATCGAGTTTTCACAGTTCTCGAACCAGTCCCTGAAGCAAAATCATTCCTCTTTCCTCATGGAGTTA GGTTCAAGGAGCCTTGGACCGAGAGAGAGCATGAGTTTGTCCCTTTCAACCACAAATCTATTTCATTTTATATTAGTATT TTCTTAGTTTTCTCATGCATTTACTTGCATTTTAACTCCTAATAATATTTCAAACTTTTGGAAGAAAGATATTGGCAAAG ACTTCATAGATCATTAAATATTTTAACTATGACTAATTTTCCTTTTGAATTTATTATTATTCCTTCCTTTGATTTAATTA TGAAATTAAATGTGAGTTTATATTGTATTTCAATCTTAGGTTATTTTTGATGGGGCTAATCAAGTTTGGAAAAGGGCACT GGAGCGAAATCGCTAAATACTTTTTGTTGAACAAGACTCCACAACAAGTTCAAAATTACGCTGCTAGCTTTTACAGGCAC CTACCAGCCACATACTTGTATGGATTTAGGAGAAGGAGGCTCACTAACTACTATGACTGTAGCCTCATGGCTGGAAACAT GAACCTCATGGAAGCCCCAACCCCATATTCATGTCCTGTTGTTCTTAATGAGGCACCAAAAACCCTCACTCTTTTCTCAG AGAAAACTCCTTTATTTCCTATTTCGCCATTTGAAGAAGGTGGTAGCGGCAACGCAAGTGGTAGCAGCAACAATACCATC AACTATGGGTCCCAGATGCTTCCAAGTGATGCAAGCATTTCCTTGACTACTAGTGATAATGAAGGCATTGATTTGGAGCT TCGCTTAGGTTGATTCCAGTGAAATTTAAAAGTGTATCATGCGTGCATAGACAGCAAAAACTTAGCTGGATAGTGTGGCA GCATCACCTGAATATCTGGCTTTTTCCTGTGTAGCTTTTATTATTTTGTTTGTTGTTATGTTAGAATTTGTTTATGTTAT CAAGGTTATGTGTATGTGTTTTCTCATAAACATGTATTCCTTTCGTGTAATATAACTATCTTGAGTTGTGCATGTACTGA ACAACTTCTGTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0017700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAATGAAATCGTTGATCCTACAAACTCACCTCCATCACCACCCAGAACATCATCTAATGCACCAATAATCTTTCT CAATTTTGGTGATTCTTCTTCAACAAATGTTCAACTACAAAGTTCTCCCATGCCTTTATGGTCTAATATGAACCTTACAT ACTATCGTCAAAATGCTTTATGGCCAGCTTCATCTCACATCTATGAGCCTTTTCACTTTCCTTTCAGTTTCCAGCCTAGC ATGGACGGCAATCGAGTTTTCACAGTTCTCGAACCAGTCCCTGAAGCAAAATCATTCCTCTTTCCTCATGGAGTTAGGTT CAAGGAGCCTTGGACCGAGAGAGAGCATGAGTTATTTTTGATGGGGCTAATCAAGTTTGGAAAAGGGCACTGGAGCGAAA TCGCTAAATACTTTTTGTTGAACAAGACTCCACAACAAGTTCAAAATTACGCTGCTAGCTTTTACAGGCACCTACCAGCC ACATACTTGTATGGATTTAGGAGAAGGAGGCTCACTAACTACTATGACTGTAGCCTCATGGCTGGAAACATGAACCTCAT GGAAGCCCCAACCCCATATTCATGTCCTGTTGTTCTTAATGAGGCACCAAAAACCCTCACTCTTTTCTCAGAGAAAACTC CTTTATTTCCTATTTCGCCATTTGAAGAAGGTGGTAGCGGCAACGCAAGTGGTAGCAGCAACAATACCATCAACTATGGG TCCCAGATGCTTCCAAGTGATGCAAGCATTTCCTTGACTACTAGTGATAATGAAGGCATTGATTTGGAGCTTCGCTTAGG TTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0017700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANEIVDPTNSPPSPPRTSSNAPIIFLNFGDSSSTNVQLQSSPMPLWSNMNLTYYRQNALWPASSHIYEPFHFPFSFQPS MDGNRVFTVLEPVPEAKSFLFPHGVRFKEPWTEREHELFLMGLIKFGKGHWSEIAKYFLLNKTPQQVQNYAASFYRHLPA TYLYGFRRRRLTNYYDCSLMAGNMNLMEAPTPYSCPVVLNEAPKTLTLFSEKTPLFPISPFEEGGSGNASGSSNNTINYG SQMLPSDASISLTTSDNEGIDLELRLG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12374
7 267 261 4.2E-59 –
PANTHER
PTHR12374:SF47
7 267 261 4.2E-59 –
ProSiteProfiles
PS51293
106 159 54 12.157
IPR017884
SMART
SM00717
107 157 51 6.5E-9
IPR001005
Pfam
PF00249
108 150 43 2.1E-8
IPR001005
Gene3D
G3DSA:1.10.10.60
109 159 51 1.4E-13 –
CDD
cd00167
110 158 49 2.25565E-10
IPR001005
SUPERFAMILY
SSF46689
110 158 49 2.15E-10
IPR009057

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0017700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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