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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0018800 |
| Transcript ID | LotjaGi6g1v0018800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Superoxide dismutase; TAIR: AT5G51100.1 Fe superoxide dismutase 2; Swiss-Prot: sp|Q9LU64|SODF2_ARATH Superoxide dismutase [Fe] 2, chloroplastic; TrEMBL-Plants: tr|Q53D73|Q53D73_LOTJA Fe-superoxide dismutase 1; Found in the gene: LotjaGi6g1v0018800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3400695..3405843) extracted from Lotus japonicus Gifu genome v1.2.
GTCTACAAACACTTGTACTGCAGTACTACCTCACTCAGCTCAATCACTTCACTTGGCTTGGAAGCTGAAGCTGAAGCTGA GTATCCCTGAGATGAAGTTGCTATCGCCATCCACTTCCACTACTTGTTACCTTTCATCATCACCTTCCGCGTTTCTTCCC CGCCACTCTCATGGTTATGCTTGCACCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATAT ATATAATTTATTTATTTATATATATGCTTCTTGTTTGGTTTTCAGGGTTCCAGAATTTGGGTTCTGCTGGCACCTTCAAA TTCTCTAAGAAACAGGTTTGCTTTTCAATTTGCCTCATTTAAGCTATTCATGTTTTCAATTTTTCAAGAAATGAGGTTTT TGTTTTTTGTCAAATTTTAAAAATAATTGAAAGTATAAACTACTATACTATGCTGACACCTAGGGTTTTGATAGTTAGTG TGTCCCTTTTCTTTGAGCTCATGTTGATAACTAGAAATTTACTACTATACTATGTTGATAGCACAGGCAAGGCATTGGTG TCTGTTGGGCTTCTTTGTGATGTTGTTAATTGGTTTCACAGTGGTGTCATAATGCTGTAGGAAGAGGACTGATGTTTTCT TTACAATGTCATTTTATTTATTTTTCTCTTCACCTCTTCCTGTGTACTGCATAATATATGGTTCTAGCATTTGAGGCAAG ACAGAACCACAAATAGTTGGTATTGGGGGGGGGGGGGGGGAGATATTACATTTGAAAATTTTATTTTCGGGGGGAGGGGG CATTTTCCATGAATCTTGGTCTGTCTATGTTGGATTGATGGAATGGTACTAGGTTCCCTTTGTTTGGATTGTCTAAAATA GGACAAGATGGAATAAAACCCTCCATTCCGTTCAATGTAATACCCCTGTTTGAGTGGTAACTTTATTCATTTAATTCCAT TTCACTCTATTCTGTTCTATTTCATCTCGTTCCACTCACCTGTCATCACTAGATACCCAAATATAGACTAAAAGAAGATA TTCTATTTTTTGGATGTTTGTTTCTTACTCATTGAGGGTGGCATCTGTTCATGCTAAAATCAAATATGTTATTTCCTGCT GGCCTAGTTCCATTCTATGTCGTATAGTTATTATGCAGTAAGAATCAAGAACACATCCAATCTAGTAACTAGAAGCAGTT TTTAACTAAAAAGAAACCTTCCATGCTTATGGGTGTAACATTGACAGTAGTGTGGAAATTAACCTATTAATGGAAGTTAT GGAAAAGGATGTTAAAAAATTGATATGAAAATGAATGGTAGAGCCTGATGATTTATTTCTCCATGGTAGAACATCGACCT GAATTAAAAAAAGCTAACCTCTAAGTCAACAGTGAAGGGAAAAACCTTTCTAAATTTTACAGCCAATAGAACCTTTTGAT GGATTACTATTACACATTCTAAATTCTGACTCACTGTTTTACCGACTGGAAGTCTTAAAGTTTTCCTATTTAAATTTCTC CATTCCTGCCTTTTCATGTTCTGAAAAGAATATATAAGAAGCATTTTGTTTCCTTGTTCTTTTATTTTAAGAAAACATGT TGAATACTGCAGAGAAGATGCGTAAGGAAAGCTGGACCTACTGAAATCAGTGCAAAGTTTGAGCTGAAGCCACCACCATA TCCAATGGTAAGATCTATAGTTTGTCAAATACTCCATTTTCCTGTTAGAATCAATTGTCCTTGACTTATGCTTCTAATGA AACGTGCAAAATGCCAAAAATTAGATTGGGCCTGGCTTTATCATTTTCAAATTTAATTTTAGCAATATTTTGGTATCTAA CCCATCATCAATAATTAAAGAAGCCAAGCATCTCACATAGAGTTATTGCAAGTGCAGAGGCTTGTAAGGTAGTCATAAAG TCGATTTTAATCCCTTGATCGTACGATTATGCGATTACAATGCACCTAGGCGATTAAAATCTGTCGCATAATCCTTTTCT GGCTAAATCTGACCCTACACGCAATTAAAATGGCAAAATAGCACCTTAGAGGCTCATGGGATGTGAGGTTGACCCGCATC CTGAATGTGACCCGTTTCCAAAACCCCTAATTTTGTTAGTAGCCAAGCGGCTCGAGCCCCCTTCTCTCCCCACTGCACCA GTGATGATGCTCCCACACCTTCGGTGAGGCTCCTCCACTGACGACGAGAGACTGAGACTGAAGTTGGAAAGTCAAGTGGT GGTGCTAGGAGTGGTGCTGGTACCAAAGCTGTTTTATTATGACATTTCTATGTGTTATGAGTAATGTTTTATGACTTACG AGTGAAAATTTATTTAAGTGTTTCTAGTTATTTAAAGTGCTTTTTTATTTATTTTTGCAATTTTATATGCATATATATAT GAATTTATATGCTTATATACATATGAACGAATTTTGCTAAATCTTACGATTATGTGATTTACGATTAACATTCCCCTCTC CAATTGGCACAGTCCCAATTTTGACTACCTTGCTTGTAACTAAACAAACATGTCATTGTCGAAATTTAAATTTGGAAACT GACTTTTATACCTTTATACTATTTTCTTCTTGCTTACTGCAGCAGGGAAATGTTTACATATCTCAGTTTTTTCCAAACCG GTGTTGAGTCTAATTACTCCGCCGGTTTTATTTTACTCAGCTAGTACAGCATATCCTTGATCTCAAGCTTTCAAGAGGTT ATCATTATTAAGAACTTGGACGTCTTTCTTGAAATTCAAATTCGGCCATTATATGATAGTTATTTCCATCTACATTTGTT TTCTTGTACTGATTCTGGTTTTTAATGTACTATGGTTATAATTAACTTAATAAATATCACATTGTGTTAGTGAATTGAAT GAAATGAAGATTTGAGTTTACCTCAATCATCCATCACCCTGCCGGGAAGCCTTAAGTTTATAACTATTAGAAGTATAATA TAAAACCATTCATGTGTCAATAACTATTACCCAAAAGCTTAAGCTTTTGAGATAGTTAGTTCATGACAATTACAATTGGC CATTCTGACTCTTTCTATTCATTCTATCAATTACACTGAGCTGATTAAACGACATATGATAGATTCATGCTGTTCTTGCT GAGATTTTGATGTGTACTCCTAATTCACCTCTACTTTTATTATCAATTTTGTCAGAATGCTTTGGAGCCAATTATGAGCC AGGAGACATTTAATTACCATTGGGGGAAACACCACAGGGCTTATGTAGATAATCTGAACAAACAAATTGAGGGAACAGAT CTAGATGGGAAGTCACTGGAGGAACTTATAGTTATTGCATACAATAAGGGTGACATGCTTCCATCTTTCAACAATGCTGC ACAGGCATGCATGATTTGTAACCATAAAGTCTTAACACGGGTTGCTGAACCATTTCTTAGTAATAATACCCTTGAACTGA TTTCAGGCATGGAACCATGAATTCTTCTGGGACTCCATGAAACCTGGCGGTGGTGGAAAGCCATCTGGGGATCTTCTAAA ACTGATTGAAAGAGACTTCGGTTCATTTGAAAAATTTGTTGATGAGTTCAAGACTGCTGCTGCAACTCAATTTGGTTCAG GATGGGCTTGGCTTGCATGTGAGTAATTACAGTTCCCACCATACTCTTATTTTCTGATAATTTTTTTAAATTCTTTGTAT ATCTAATTTTGCAAGTGGTATTTACCCTTTTTCATTTATGAAATATAGATAAAGAAAACAGACTTGATGTTGGAAATGCA ATAAATCCTCTTGCTTCTGATGAGGACAAAAAGCTTGTTGTGGTGAAGACTCCCAATGCTGTAAACCCCCTTGTTTGGGG CTACTATGTAAGTAGTAAATTCTACTTGTAATATCCATTCCTTTTTTGTCTTAATTACATTTTCGGTCCCTATAGTTTCA GAAATGCGTGATTTTAGTCACTATAGTTTAAATTGCTCAAATTAAGTCACTACTTATAAAATTGAAGAAATTTGATCCTG ATATTAATTTGTCATCCAATAACAGAAAAATTGCACATATCACACTTTGATGGGGAAAGTGACATAAATCATCTTAACAT GTCATTCACGTAAAAAATTGTGATCCATATCGACTTTTTTCCGCTGATTATTGGATGACAAGTTAATGCCTGGACTATTC TTGTTCAATTTTTAAAGTAGAGAGATTTAATTTGAGCAAAATCACACATTTGTAAAACTATAGGGACCAAAACTGCAATT AAGCCTTCATTTTTTGTTTTGAAACATGAATGCTAGGGTAGGGCAGAAGTTCAAATGTCTGATGAGATTTCATATTTTCT TGCAGCCACTCCTTACCATTGATGTCTGGGAGGTATTCATATCTTTCTTTCTGTTACTGATTTGATGATTTTTTAATTGC TATTATTTCATTAATAACAATTTGCTAACTTTGAATACAATATTCACTTTTGAACAGCATGCTTACTACCTTGACTATCA GGTATGTAGTTCACACACATTATCCTGTAATTTCCATCTTTGAGTGTTCTGGTTAATTGATAAATATAACTCTGACTACC TTGTTATGTTATTTGCAGAATCGGCGCCCTGATTTTATATCAGTGTTCATAGATAAGCTTGTGTCTTGGGAAGCAGTGAG CTCAAGACTTGAGCAAGCTAAGGCTATAGTTGCAGAGAAGGAGAGAGAGGATGAGAGGAGAAGAACAGAGGAAGAAGAGA AATCGACAATAAGGGAAACTCCTCATGAGATATTTCCAGATAATGATTCTGACTAGAATGCAAAATGAGTGTGCTTATTT AGTCTAGCATCAGTTCAAAATGAGAGGTTCAATCACATCAAGTTGCAAATTTTGTTCTATGGTCGATATCCTAAATTTTG TTCAATAATGTCATTAGTTTCGTTATTCATGTAATGAAATAATGACAATTTCCTAGTGAGTTTTGTTTATAGGGCATTGC TCCGGTACCCATTGAAAATAAGAGGGTATAGTACCCTTTAGTTCACTTTTTACCATACAAAGGACTAATTCATAAATTTT AAAAAGTTTATTGGAGAGAGAACATGACTAAAAGGTTTGGAACCCTTCACTCTTAAAGGGGTATCAAAGAAATTGCCTTA TTTTAACTATTGCATGAATCAAGTTTGTT
CDS sequence (LotjaGi6g1v0018800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTGCTATCGCCATCCACTTCCACTACTTGTTACCTTTCATCATCACCTTCCGCGTTTCTTCCCCGCCACTCTCA TGGGTTCCAGAATTTGGGTTCTGCTGGCACCTTCAAATTCTCTAAGAAACAGAGAAGATGCGTAAGGAAAGCTGGACCTA CTGAAATCAGTGCAAAGTTTGAGCTGAAGCCACCACCATATCCAATGAATGCTTTGGAGCCAATTATGAGCCAGGAGACA TTTAATTACCATTGGGGGAAACACCACAGGGCTTATGTAGATAATCTGAACAAACAAATTGAGGGAACAGATCTAGATGG GAAGTCACTGGAGGAACTTATAGTTATTGCATACAATAAGGGTGACATGCTTCCATCTTTCAACAATGCTGCACAGGCAT GGAACCATGAATTCTTCTGGGACTCCATGAAACCTGGCGGTGGTGGAAAGCCATCTGGGGATCTTCTAAAACTGATTGAA AGAGACTTCGGTTCATTTGAAAAATTTGTTGATGAGTTCAAGACTGCTGCTGCAACTCAATTTGGTTCAGGATGGGCTTG GCTTGCATATAAAGAAAACAGACTTGATGTTGGAAATGCAATAAATCCTCTTGCTTCTGATGAGGACAAAAAGCTTGTTG TGGTGAAGACTCCCAATGCTGTAAACCCCCTTGTTTGGGGCTACTATCCACTCCTTACCATTGATGTCTGGGAGCATGCT TACTACCTTGACTATCAGAATCGGCGCCCTGATTTTATATCAGTGTTCATAGATAAGCTTGTGTCTTGGGAAGCAGTGAG CTCAAGACTTGAGCAAGCTAAGGCTATAGTTGCAGAGAAGGAGAGAGAGGATGAGAGGAGAAGAACAGAGGAAGAAGAGA AATCGACAATAAGGGAAACTCCTCATGAGATATTTCCAGATAATGATTCTGACTAG
Protein sequence (LotjaGi6g1v0018800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLSPSTSTTCYLSSSPSAFLPRHSHGFQNLGSAGTFKFSKKQRRCVRKAGPTEISAKFELKPPPYPMNALEPIMSQET FNYHWGKHHRAYVDNLNKQIEGTDLDGKSLEELIVIAYNKGDMLPSFNNAAQAWNHEFFWDSMKPGGGGKPSGDLLKLIE RDFGSFEKFVDEFKTAAATQFGSGWAWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYYPLLTIDVWEHA YYLDYQNRRPDFISVFIDKLVSWEAVSSRLEQAKAIVAEKEREDERRRTEEEEKSTIRETPHEIFPDNDSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 54 | 275 | 222 | 5.4E-116 | – | |
| PANTHER | 54 | 275 | 222 | 5.4E-116 | – | |
| SUPERFAMILY | 58 | 145 | 88 | 1.07E-33 | ||
| Pfam | 59 | 144 | 86 | 3.2E-28 | ||
| PRINTS | 63 | 74 | 12 | 1.3E-19 | ||
| Gene3D | 77 | 143 | 67 | 3.3E-22 | ||
| PRINTS | 84 | 97 | 14 | 1.3E-19 | ||
| PRINTS | 127 | 140 | 14 | 1.3E-19 | ||
| SUPERFAMILY | 146 | 274 | 129 | 6.02E-46 | ||
| Gene3D | 148 | 288 | 141 | 9.5E-48 | ||
| Pfam | 151 | 269 | 119 | 1.8E-36 | ||
| PRINTS | 180 | 188 | 9 | 1.3E-19 | ||
| PRINTS | 233 | 245 | 13 | 1.3E-19 | ||
| ProSitePatterns | 235 | 242 | 8 | - | ||
| Coils | 273 | 293 | 21 | - | – | |
| MobiDBLite | 279 | 311 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Superoxide dismutase activity | Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide. | ||
| Biological process | Superoxide metabolic process | The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0018800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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