Transcript — View — Lotus Base

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LotjaGi6g1v0020300.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0020300
Transcript ID	LotjaGi6g1v0020300.1
Lotus japonicus genome version	Gifu v1.2
Description	N-acetyltransferase; TAIR: AT2G39020.1 Acyl-CoA N-acyltransferases (NAT) superfamily protein; Swiss-Prot: sp\|Q9ZV06\|NATAL_ARATH Probable acetyltransferase NATA1-like; TrEMBL-Plants: tr\|I3T2X2\|I3T2X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0020300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:3768528..3769936) extracted from Lotus japonicus Gifu genome v1.2.

TGAGGATCCAGACACATCACCCAATACCCATTCTCATAAAAAGTGAAAAAACCCTAATCAAATCCACCCATGGCCGCCGC AGCACCGCCACCCGCACCAACTCCGGCAGCCACATCATTGCCGGAAACCGCCACACACCGTCACCCTGTGTTCACCCGCA TCCGCCTCGCCGTCCCTTCCGACGTCCCCCACATCCACAAGATGACATACCAAATGGCCGTCTTCGAACGCCTCACCCAC CTCTTCGCCACCACCGAATCCTCCCTCACCTCCACGCTCTTCTCTCCGGACAACAAACCCTTCCACTCCTTCACCGTCTT CATCCTCGAAGTCTCCTCGAACCCCTTCACCGACACCCACTTCGACAACGACCCTTTCTACAAGCCCGTAACGAAAACCG TGCACTTGGAGCTCCCACTCGATGACCCAGAGAAGGAAACGTTCAGAAATCAGCTCGGGAATGAGGTTTTCGTTGCTGGG TTTGTGCTGTTTTTCCCAAACTATTCCACTTTTCTGGCGAAGCCTGGGTTCTATGTGGAGGATCTGTTCGTGAGGGAGTG TTATAGGAGGAAGGGGTTTGGGAGAATGCTTCTTTCTGCGGTGGCGAAACAGGCTGTGAAGATGGGGTATGGGAGAGTGG AGTGGGTTGTGCTTGATTGGAATGTTAATGCTATCAGGTTTTATGAGGATATGGGTGCTAAAATCTTGCAGGAATGGAGG CTTTGCAGGCTCACTGGTGATGATTTGCAGGCTTATGGAGGTTCTGAGTGAGAAACAAAATAGGAAGTTGTGTTTTAATT TCTGTGTTTCTCTGAATCTGGGTTTGTTGTAATTTAGCAACTTTGTTGTAATTTGAGTTTCCAATTTTCTAGATGGATAT GTTTCTGTTTTCCTGCTGCAGAACTAGCACTTGTACTGTTTGGATGAGTAGTCTATAATCTAAAATAAAATTTCTGTTCA TGTAGCAATTTGGATCATAGCCATCCAAATTTTTCTTCATCCAGAATCTGAGTGGTTAGTTTTGTTTGTGACTGTCTAAA AAATTAAATTTTAGAACTTGAAGCAAGAGTTTGTAGAATATGGATTGGTTTTAGATTGTTGGATTGGATATATAATCAGC TGTTTGAATCTCAGAATTTCAGATGGAGAGATTGAGAGTAATTCACACATTTTGTAACACATGCTGAACTAAGCCCAAAA AGAGTCAAGTCTAGTCCTTGTATTATATTCTGCATTCATTTCTCATTGAGGACTTTGATAATAACATCATCTTACTCTGT TGTGAAGTTTCAGTTTTTTTTTCTTTCTTTGTTTCATATTTTAGTTGTGGTTTTCTTTGATGTTCTTCGTGATGATGCTG GAAACTTGTAGCAGCACTGGTTAAAGTGGTTGGCAATTGGCATCTTGAG

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0020300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGCCGCAGCACCGCCACCCGCACCAACTCCGGCAGCCACATCATTGCCGGAAACCGCCACACACCGTCACCCTGT GTTCACCCGCATCCGCCTCGCCGTCCCTTCCGACGTCCCCCACATCCACAAGATGACATACCAAATGGCCGTCTTCGAAC GCCTCACCCACCTCTTCGCCACCACCGAATCCTCCCTCACCTCCACGCTCTTCTCTCCGGACAACAAACCCTTCCACTCC TTCACCGTCTTCATCCTCGAAGTCTCCTCGAACCCCTTCACCGACACCCACTTCGACAACGACCCTTTCTACAAGCCCGT AACGAAAACCGTGCACTTGGAGCTCCCACTCGATGACCCAGAGAAGGAAACGTTCAGAAATCAGCTCGGGAATGAGGTTT TCGTTGCTGGGTTTGTGCTGTTTTTCCCAAACTATTCCACTTTTCTGGCGAAGCCTGGGTTCTATGTGGAGGATCTGTTC GTGAGGGAGTGTTATAGGAGGAAGGGGTTTGGGAGAATGCTTCTTTCTGCGGTGGCGAAACAGGCTGTGAAGATGGGGTA TGGGAGAGTGGAGTGGGTTGTGCTTGATTGGAATGTTAATGCTATCAGGTTTTATGAGGATATGGGTGCTAAAATCTTGC AGGAATGGAGGCTTTGCAGGCTCACTGGTGATGATTTGCAGGCTTATGGAGGTTCTGAGTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0020300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAAAPPPAPTPAATSLPETATHRHPVFTRIRLAVPSDVPHIHKMTYQMAVFERLTHLFATTESSLTSTLFSPDNKPFHS FTVFILEVSSNPFTDTHFDNDPFYKPVTKTVHLELPLDDPEKETFRNQLGNEVFVAGFVLFFPNYSTFLAKPGFYVEDLF VRECYRRKGFGRMLLSAVAKQAVKMGYGRVEWVVLDWNVNAIRFYEDMGAKILQEWRLCRLTGDDLQAYGGSE

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	21	21	-	–
PANTHER	PTHR10545 View details on PTHR10545 Search for proteins/transripts with this domain View external data on PTHR10545	19	230	212	1.2E-68	–
PANTHER	PTHR10545:SF55 View details on PTHR10545:SF55 Search for proteins/transripts with this domain View external data on PTHR10545:SF55	19	230	212	1.2E-68	IPR039534 Show description in modal box View details on IPR039534 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF55729 View details on SSF55729 Search for proteins/transripts with this domain View external data on SSF55729	30	225	196	5.75E-28	IPR016181 Show description in modal box View details on IPR016181 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51186 View details on PS51186 Search for proteins/transripts with this domain View external data on PS51186	83	224	142	14.937	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00583 View details on PF00583 Search for proteins/transripts with this domain View external data on PF00583	129	209	81	1.6E-14	IPR000182 Show description in modal box View details on IPR000182 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd04301 View details on cd04301 Search for proteins/transripts with this domain View external data on cd04301	135	191	57	8.50462E-8	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008080 View details of GO:0008080 AmiGO InterPro QuickGO	Molecular function	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.	Subterm of View details of GO:0016407 View details of GO:0016410
GO:0016747 View details of GO:0016747 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016746

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0020300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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