Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0020800 |
| Transcript ID | LotjaGi6g1v0020800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hemerythrin HHE cation-binding domain protein; TAIR: AT3G54290.1 hemerythrin HHE cation-binding domain protein; Swiss-Prot: sp|C0SPA7|YUKB_BACSU ESX secretion system protein YukB; TrEMBL-Plants: tr|A0A072VJ07|A0A072VJ07_MEDTR Hemerythrin HHE cation-binding domain protein; Found in the gene: LotjaGi6g1v0020800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3884114..3887938) extracted from Lotus japonicus Gifu genome v1.2.
TAAAATTGTTATAAATTATATAAAATAAATAACAGGTAAAATCGGTTTCCAATACCCCCTCTTGCCTCCCATTGGCTCTC ACATGTGTGACACCTGTGCAAGACCCAACATGTATTGCACCTTATAAGTTATAACCCGCCTTATTTTATAGTACTCAAAC AAACACAGCATAGAAAAGAAAATATAGGTAGCATTGGGTTTTATATTGAGACATGTAATCAGATAGCATTGATCCAAGAG AAGCACAGGAATCTAGTCTCTCTTTCTTCCCAAACACAGCAACCAACAACATCAATCCACGTTCTTGATTCAGTGCTTCA ACTCCAAGGAGCCAAGCCACACATAATCACTGCTTTTTTGACACCAAAAAGTTCCCATTTTCCACCTTCCATCTTTTTCT TCATTCTCTCTTACTAAGATTTTGCTGCTTCCAGCTTAAGACCCACCAAGATTCTAACACCCATTTGCATTCTTCCATGG GGAACTGTTTAGGCTCGTCGGAAAAACTGACGGCGGAGATCGTACCACACGGCGGAGCCACCGCGTATCCTACTGTTCGA TTACACGGCTCGCCGAACAGCATTGTAGCCGCCTACATTGGCTTCGCCAATCTCCCCAACACCATTCCGCCGGAGGTCGT CCCCACCACCAGACCTTCGCCGGAACCGCCGTCATCAACGGCGCGTGTCGGAAGATCCGCGTGGATAAGGCCGGTAACGC AGCAGGTTGGAGCAGGAGCTGAGTGGGGATCCCGCGACGCGCTTGTCCAGTTCATCGACGCGCGGTTCCCGGATCTTTCG GCGATTGGCGGTGGCGAGGAGGAAACGACGACGGCGTCGTTGATGGTGAGGGTGACGCGGCTGCAGCACAAGAGCATGAC GTGGCACGTGGAGAGGATGGTGAGGTGGGGGGAGGATCTGGCAACACGTGGAGGGAGGAAGGCCGTTGATCCGAAGGTGG GGAGTTGGAGAATGGAGATGAGGAAATTTGGGAAGAGCTACTCTGAGGTGCTGGAGGTGATGATGGAGCACGCGCGGATG GAGGAGACTGTCCTTTTCCCTATTTTAGATGCTGCTGATCGAGGTACATGAAACCCCCACACACACTAGTTATATTTTTG ACACATTAGTTAATTTTAAATTACTCTTGTAAGTCAATAAAGGTAAGGGTTTTTTCAAGAGTGCGGTTAAATTGAACTCT CGACCTAGAGGTTTAGACTGTCACTTTTTATCATTGCGACCGGCGCCCCCTATTGGGTGTTTAGAAGACTTTCTTCACAC TTTCTACTTAAACACTGTTTTTTAAACTAGTAAAAATTTATGTAAGATTCACTAAATTATATATATGACCTCCACTTCCA AGTTAGTGAGATCTAAGTTGTAACTTATAGTAAGCCAATAATAATAATAAAGGGCAATTTTGGTATAAAAAAATAAAGGG CAATTTCGGAAACTGCAGCACATATCGTGAAGAAAAAGGGTTGCTTGTCTTTAAAGCAATGATCCAAGTGAACATGGCTA GCTAATTGAATGTGATGGTGAGTGCAGGGCTATGTAAAGCTGCAAAGGAGGAACATGCTAGGGACCTACCCATAATGAAT GGCATCAAAGAAATTATCAAATCCATTGAGGTTTTAGAATCCAGCAGCCCTAAGTACCGAGATGTTTTGTACACTCTTTC TGCTCGACTTAAATCATTGCAGGTATTTAAACCCAACCTATTAGAACTAGTTATAATCTTGTTGCTCTCTTTTGAATTTT CTTTTTTCTCATTTCGATCATATATCTATAAGTGCTAGTCACCAATGTTGGTCTACTGATAAGAAAGCTAGTCCCCCGTA AAAGTGAGAACACAAGTTCGAGCTGTTAGAAAGTCTTATGTTGAGAATGACAACTACAATTTCTCAATCAAACGAGAATA TATGTCAAAGAACAATAAACAATAACTGCTAGCGGCAGACATGTATTGCTTAGGGCTGAGCATAAAGGTCCAACCCGAAA CAAAATAGAAAATTGGTGAAGTCGGGTCGGGTTAGGTCGAGTTGTTAGTTACAACAGGATGTAAAAACAAGCTTAGATGG TTAACACCCGTCAGGTTCGGATCAAGAAAATGAAACAAATCAACACCCGACACAAACCTCACTCTCATGGAATAAGTTTA GGGCCTTAAGCTTTTAGCCCATTAGGTTAGCACTAAGGTTTTCTCATGCAGGACCAACTGACCATACTGAACTAGGCTAA ATTTGGCCCGAGGCCAACTAAGTTTATTTTCAGGTTTATCAGGTTCGTTTTATATCGAGTAAATAGCCAATCAGGTGGGC AGGCCAAGAGTTAGATTGGGTCGATTTCTTAGGCCTTTTAAAATTAAGTGCCACCATCGTCCTCCCCTCCGCAGCCTCAA CCTGATGTGCAATCCATTTTCCTCCAACTTGCTTTTCTTCTGCTCAGTTCCTGGTCCAATGGTTCTACGTATGCACCTTT TGTTGATGATAGCCTTGTTGCAGGTAAACTTTTCCAAATCGCTTGGAAATTAGAAGAAGCGATCGACACCTGAAATATAA TATCAAATTTTCACTTTGAGAACAACACTTCTAGACTTGGATGAAGCTTCGGAGTTTGCTTTTGTTAGTAGTTATGTTGG TTTTCCTTTATCCGTTTGGGGTTTTCTTGTTTCAAGATTAGAGTATGTTAGCTTGTTTTAATGAGTATGTGTGGAGTGTA GTGCTCTTTAGGTTTTGAGTCCCTTCACATGTAAGTGTCATTAGGCTTTAGCTTATGTCCTAAATCTCATGAAACTTTGA CCCCAAAAATCACTCATATAGCATATTCTCTGAAAGTAAAGTGTCGTTTAAGTTTGTCCCTAAACTAAGAATGTTCCTTG AAAAGTCTCAGAAAATGCAAATCTTCGATGAAGTTAGCCTCTGTCGCGTTTGGTCAACTAATGTTCCCACGTGACATATT AATTGCCCATGTGACCGTTAATTGCCCAATAAGCATCGTACATGCTGCCCTGGTAAGCATCCAACATCCTACCGGGCAAG CACACAAAGAGATGTGAAAAAATACAAATTTTTAAAAGTAGAGGTTCAAACCCACCACATAAGCATATTTTTAATTATGA GTTTAATGTCTGAAATGGATTTTTCTCACCTTATGCCTATTGCCAATTTGTTCTTATAGGGACAATGCAAGCAACACTTT ATGGAAGAGGATTTGGATTTACTTCCATTAATGGAGGCAATGGAGTTGAGCAAAGAGCAGGATGAGAGTGCACTGGAGGA ATGTTTCCATGTGATGCAAGGAACACATAATCGGTTGTTGAAGTTTCTTCTTGAAGGGCTCTCACCCCACGATGCAATGC AGTACTTGGACTTGATTGGAAAGTGCAGGGACAAAGGGAGAATGGAATTCATGCTTCGGAAGATAGTTGAGTGAGATATC TTCATGTAGCTAGGTCCAACCATAACACGCCAAAGGATGAACCGTGAAGTTGATATAGTCAATGCAAAAAAATTCAAACT TTAGGAATTACTTGGATTCTTTTGCTTTTGTTGTCAATAACTTCATCTTAAGTTTACCATGCACCCTGACCATTGGTTAA GGGAATAGAAAGTAGGATAGGTTTTGACAAAGTAGGGCAATTTATTTTCTTATTTTCCCTTGATGGTTTGGATAAGGTTG TTTATATGTCCCTACATGATCAAGTACATATTTGTACCTGAAATTTATATATTCATAACTTCCGGTCTGACTGATTTGAT TTGTAAGAAGACAGTTTAATTAATTTAAACACAAGTAATTGAAAACCCCTCAGCAACCAATCCTC
CDS sequence (LotjaGi6g1v0020800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAACTGTTTAGGCTCGTCGGAAAAACTGACGGCGGAGATCGTACCACACGGCGGAGCCACCGCGTATCCTACTGT TCGATTACACGGCTCGCCGAACAGCATTGTAGCCGCCTACATTGGCTTCGCCAATCTCCCCAACACCATTCCGCCGGAGG TCGTCCCCACCACCAGACCTTCGCCGGAACCGCCGTCATCAACGGCGCGTGTCGGAAGATCCGCGTGGATAAGGCCGGTA ACGCAGCAGGTTGGAGCAGGAGCTGAGTGGGGATCCCGCGACGCGCTTGTCCAGTTCATCGACGCGCGGTTCCCGGATCT TTCGGCGATTGGCGGTGGCGAGGAGGAAACGACGACGGCGTCGTTGATGGTGAGGGTGACGCGGCTGCAGCACAAGAGCA TGACGTGGCACGTGGAGAGGATGGTGAGGTGGGGGGAGGATCTGGCAACACGTGGAGGGAGGAAGGCCGTTGATCCGAAG GTGGGGAGTTGGAGAATGGAGATGAGGAAATTTGGGAAGAGCTACTCTGAGGTGCTGGAGGTGATGATGGAGCACGCGCG GATGGAGGAGACTGTCCTTTTCCCTATTTTAGATGCTGCTGATCGAGGGCTATGTAAAGCTGCAAAGGAGGAACATGCTA GGGACCTACCCATAATGAATGGCATCAAAGAAATTATCAAATCCATTGAGGTTTTAGAATCCAGCAGCCCTAAGTACCGA GATGTTTTGTACACTCTTTCTGCTCGACTTAAATCATTGCAGGGACAATGCAAGCAACACTTTATGGAAGAGGATTTGGA TTTACTTCCATTAATGGAGGCAATGGAGTTGAGCAAAGAGCAGGATGAGAGTGCACTGGAGGAATGTTTCCATGTGATGC AAGGAACACATAATCGGTTGTTGAAGTTTCTTCTTGAAGGGCTCTCACCCCACGATGCAATGCAGTACTTGGACTTGATT GGAAAGTGCAGGGACAAAGGGAGAATGGAATTCATGCTTCGGAAGATAGTTGAGTGA
Protein sequence (LotjaGi6g1v0020800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNCLGSSEKLTAEIVPHGGATAYPTVRLHGSPNSIVAAYIGFANLPNTIPPEVVPTTRPSPEPPSSTARVGRSAWIRPV TQQVGAGAEWGSRDALVQFIDARFPDLSAIGGGEEETTTASLMVRVTRLQHKSMTWHVERMVRWGEDLATRGGRKAVDPK VGSWRMEMRKFGKSYSEVLEVMMEHARMEETVLFPILDAADRGLCKAAKEEHARDLPIMNGIKEIIKSIEVLESSSPKYR DVLYTLSARLKSLQGQCKQHFMEEDLDLLPLMEAMELSKEQDESALEECFHVMQGTHNRLLKFLLEGLSPHDAMQYLDLI GKCRDKGRMEFMLRKIVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 337 | 337 | 1.1E-155 | – | |
| PANTHER | 1 | 337 | 337 | 1.1E-155 | – | |
| Pfam | 123 | 271 | 149 | 9.4E-17 | ||
| CDD | 126 | 270 | 145 | 3.60998E-11 | – | |
| Gene3D | 130 | 291 | 162 | 2.4E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0020800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…