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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012312
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.484s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0162139.1
n.a. Zinc finger protein-related isoform 2 [Theobroma cacao] gi|508708207|gb|EOY00104.1| chr0 76414002 76418884 +
2 domain predictions
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Lj0g3v0162139.2
n.a. Zinc finger protein-related isoform 1 [Theobroma cacao] gi|508708206|gb|EOY00103.1| chr0 76414002 76423289 +
2 domain predictions
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Lj0g3v0162139.3
n.a. Zinc finger protein-related isoform 1 [Theobroma cacao] gi|508708206|gb|EOY00103.1| chr0 76414002 76424433 +
2 domain predictions
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Lj0g3v0298719.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508727329|gb|EOY19226.1| chr0 155220800 155224681 +
2 domain predictions
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Lj0g3v0298719.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508727329|gb|EOY19226.1| chr0 155220800 155224681 +
2 domain predictions
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Lj2g3v0719120.1
n.a. Zinc finger protein-like protein [Medicago truncatula] gi|357500299|ref|XP_003620438.1| chr2 11385534 11396139 +
2 domain predictions
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Lj4g3v3099530.1
n.a. Zinc finger protein-like protein [Medicago truncatula] gi|357500299|ref|XP_003620438.1| chr4 41297066 41311617 -
2 domain predictions
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Lj4g3v3099540.1
n.a. Zinc finger protein-like protein [Medicago truncatula] gi|357500299|ref|XP_003620438.1| chr4 41297133 41311409 -
2 domain predictions
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Lj5g3v2240780.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508727329|gb|EOY19226.1| chr5 32171044 32173470 +
2 domain predictions
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LotjaGi2g1v0205100.1
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIY9|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853703 64867879 +
2 domain predictions
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LotjaGi2g1v0205100.2
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIZ0|I1KIZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853966 64866151 +
2 domain predictions
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LotjaGi2g1v0205100.3
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIY9|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853966 64867209 +
2 domain predictions
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LotjaGi2g1v0205100.4
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIY9|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853966 64867209 +
2 domain predictions
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LotjaGi2g1v0205100.5
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1KIY9|I1KIY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0205100 LjG1.1_chr2 64853984 64867209 +
2 domain predictions
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LotjaGi2g1v0274900.1
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|I1L2P4|I1L2P4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274900 LjG1.1_chr2 74667509 74676001 +
2 domain predictions
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LotjaGi4g1v0244600.1
n.a. Zinc finger protein, putative; TAIR: AT1G74770.1 zinc ion binding protein; Swiss-Prot: sp|F4HVS0|BTSL2_ARATH Zinc finger protein BRUTUS-like At1g74770; TrEMBL-Plants: tr|I1MTQ0|I1MTQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0244600 LjG1.1_chr4 59612873 59624894 +
2 domain predictions
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LotjaGi4g1v0244600.2
n.a. Zinc finger protein, putative; TAIR: AT1G74770.1 zinc ion binding protein; Swiss-Prot: sp|F4HVS0|BTSL2_ARATH Zinc finger protein BRUTUS-like At1g74770; TrEMBL-Plants: tr|I1MTQ0|I1MTQ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0244600 LjG1.1_chr4 59612874 59626065 +
2 domain predictions
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LotjaGi4g1v0453800.1
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82572686 82582294 -
2 domain predictions
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LotjaGi4g1v0453800.10
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.11
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581901 -
2 domain predictions
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LotjaGi4g1v0453800.2
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82572686 82582294 -
2 domain predictions
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LotjaGi4g1v0453800.3
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573188 82582080 -
2 domain predictions
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LotjaGi4g1v0453800.4
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82580147 -
2 domain predictions
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LotjaGi4g1v0453800.5
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.6
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.7
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.8
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|K7L4Y8|K7L4Y8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi4g1v0453800.9
n.a. Zinc finger protein, putative; TAIR: AT3G18290.1 zinc finger protein-like protein; Swiss-Prot: sp|Q8LPQ5|BTS_ARATH Zinc finger protein BRUTUS; TrEMBL-Plants: tr|A0ZT53|A0ZT53_LOTJA Putative E3 ubiquitin ligase; Found in the gene: LotjaGi4g1v0453800 LjG1.1_chr4 82573485 82581880 -
2 domain predictions
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LotjaGi5g1v0344100.1
n.a. Hemerythrin class glutathione S-transferase; TAIR: AT3G54290.1 hemerythrin HHE cation-binding domain protein; Swiss-Prot: sp|C0SPA7|YUKB_BACSU ESX secretion system protein YukB; TrEMBL-Plants: tr|I1NFE3|I1NFE3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0344100 LjG1.1_chr5 66115628 66118307 +
2 domain predictions
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LotjaGi6g1v0020800.1
n.a. Hemerythrin HHE cation-binding domain protein; TAIR: AT3G54290.1 hemerythrin HHE cation-binding domain protein; Swiss-Prot: sp|C0SPA7|YUKB_BACSU ESX secretion system protein YukB; TrEMBL-Plants: tr|A0A072VJ07|A0A072VJ07_MEDTR Hemerythrin HHE cation-binding domain protein; Found in the gene: LotjaGi6g1v0020800 LjG1.1_chr6 3884114 3887938 +
2 domain predictions
 –