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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0021200 |
| Transcript ID | LotjaGi6g1v0021200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-related protein; TAIR: AT3G33520.1 actin-related protein 6; Swiss-Prot: sp|Q8LGE3|ARP6_ARATH Actin-related protein 6; TrEMBL-Plants: tr|I1JUI1|I1JUI1_SOYBN Actin-related protein 6; Found in the gene: LotjaGi6g1v0021200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3928190..3932866) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTTTTATCTATTGAAGAAAAGTTACATTTTAATCCCATGATAGAGAAATTAGTTGGATTTAGCATTCGCCCTAGCC TGAATTTCAATATCATACTTATGTGTTGTGATATTAATTAGAATGATGTCTATTTCTTTCTTCATAAATATTCAGGTGTT TTTTTTAATGAATCTCACAAAATAAATATTTGTATTTTTAGTTAATATGCGCACTCAACATTAGGGAAGAATTTGATTCA TTCATGGTATCAATCATCAAAGTGAAACCAAACCAGTCAACATGAAGCCGTGAGTGGTAATGTAATCATCGCTCGCAAAT GTCCCCGAACGTGGTGGTTCTAGACAACGGCGGCGGCCTAGTGAAGGCCGGAATCGGCGGCGAACGCGACCCCTCCGCCA TCGTCCCAAACTGCCTCTACCGCCCCTCCGCCGCCAAGAAATGGCTCCACCCAAACCCCCTAAACTCCGCCGCCGAACAA GACCTCACCTCCGCCGCCGTCCGCCGCCCCATGGACCGCGGCTATCTCATAAACCCCGACCTCGAGCGCGAGATCTGGTC CCACCTCTTCTCCTCCACCCTCCGCATAAACCCTTCACAGTGCTCCCTCCTCGTGACGGAACCGCTCTTCGCTCTCCCCT CCATTCAACGCTCCCTCGACGAGCTCGTCTTCGAGGATTTCAACTTCCGGTCACTCTACGTCGCCGATTCCCCTTCCCTC GTCCACCTCTACGAAGCCAGCCGTGGAAGGCCGAACGGACCTAAGGCGCAGTGCAGTTTGGTGGTGGACTGCGGATTCTC CTTCACCCACGCCGCCCCTGTGTTCCAGAATTTCACCCTCAACTACGCCGTGAAGAGGATTGATCTTGGTGGTAAGGCCC TCACCAACCACCTTAAGGACCTTGTTTCCTTTCGCTCCCTCAATGTCATGGATGAGACTTTCATCATTGATGAAGTGAAA GAGAAGCTCTGCTTTGTTTCCCTTGATCTTCCCCTTCATCTCAATGTGGCCAGGTTTCATCTCTCTAAACCCATGTTTTT TCTGTTAAATCATGCTTTCAGTAGTCAACTTAATTTTTGTTTTTGTTTATGTTAAATCAGTTGCCAGTAAAAGATTTATT TGTAAGCTGGTTCTTAGAACATAAATGTTCATTTACAAGCTATGTAAGGAGTTAATGTTGGAAAGTTATCATATCATCAA CCAACAATCAATATTGGTGGTAGGCAAGTTAGATCCTTGTAGGAGTCGGGGCACTAGTTCGAACTCCAGGAAAGTCATTT GTTAGGGGACTGCCACAATTTTACGAATGACTGAAAAGACAAAAAAAAAAAGAGCTTATGATGGGTTAGGGGTAGTTTAC TTATAAATTATAATGCAAGAATTAGTGTGTCTTTGGAAATCTACAAGATTTCCAAATTGGCAGGAGAAGTGATTCTGGGA TGATTATTGGTGAATCCAAACATATTGTAACATTGCTATCAAAAGCAAAAGCATATCAAAATAACTTATCACCTAAATAT TCATTGATATAATAAAAGCTCATTCTTATCCCAGTGTTTGGATTCTGTTGAATGGAATAACTTATCACCTAATTATTTGT TTATATAAGCTCATTCGTACGGTCTTACCAGTACCACGTAGTGTGTGCTTGGATTTCTGTTGAATTCAATGCTGATCCAC GCTAAACTCAACTCTACAAAGTCTTGCTTCTTCATTTGTACGTTGAGATTTGTGAATTCACTTTTGCATTGGTGCAAGTG GAGGACTAAGCATGCACATAAACGTTTAGTTATAAGCTATATAAGCTCTTAATATTAGAAAATTATCAAAATAAGCTCGT AATGGTTTGTAGATAGTTTACTTAAAATGCAAGAGTTGTTTGCTTTACTTATCAAAACATATGTGTAAGTGGAAATAGAG TAGAATTTTATGTTGGAGGAAGAAGTGGTTGTGGGAGGTTCAACGAATTCAAACACACTGCAAAGTTACTCATAAAAGCA AAAGCATATGGAAACTAATATGATATATCTTTCCAAGGTTGAGGATGAAAATAAGGTTTATGCAAAAGGGTTTACTCGTG GCATTATTTATAGGCACCATAATAGAATACATGATTCTGACTGTGTTGTGCTTTATGATAGGAAGAGTGGGAAAGAGAAT CTCCTGAGGTGTACATATGTGCTTCCGGATGGTGTGACATACATGAAGGGGTTTGTTAAATATCCAGATCAGGCGCGCAG ATATCTTTCTTTGACGGATGGTGGTCTTCCTTCTCCCTTGGCGGATGTGAATATCCCAGATATTGCTGAGGAGCATCTTC AGGATACAAAGAAAATTGATTTGACAAAAAATGTATTTTCTTGCATTTCTTTTTGTACCATGGAATTCATTTCTTTTGTC TGTTATTTTAATAACTGTGTTCTGTAGGAATTCGACTTGACAAATGAACGGTTTCTTGTCCCGGAGATGATCTTCCGTCC TGCTGATTTGGGTCTGTCACTTTTATTTAATTCTAGTACTGTTTTCAAATGAAGTACAACTTCAGTTAGTTCTTTGGTTG ATGACTTTCTTAAGTGACAGTAATTGAAGGAGGTTCTTAGTCTAATCTGATCATTTTCCCATTGGTATTAGTTGTTTCTT CTGTTCTCTATAAAAAAGCTGAACGGAAAGGTTTGCAGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTACAAGCTG TTAATTCCTGCCATCCACATCTCCACCCTGTACTCTATGAAAGGTAACCAATTGAAAGCAATTGATTTGATGCTGTGTGT TAGGACCGATGACCCAATCGCAGGTCCAAGGGAATCACTGGCTCAAGAGGGGAGTGGACCCAAGATATGGAGAGTATATT CTAGAAGGGGTAAAGGGGGAAATAGGGCTAAGGGATAACTAACTAACAGCCAGCTGTTGAGAGAGAGGGTGAGAGCTGAT TGTAATCCCAGAGTATAAGGGACGTTGAGGAAGGTAGAGAGAGTATCTTATGTAAACTAGTGCATAGAAATGAATAGGAA GCTTTGAGCTTCCTATAGGAGCCTAGCTCTGGTCAGATTCAGGAGATATTACTCCCTTTCTGTAGTTCCCAAATCCATTA ATAAGCAATCAAATACATTTTTAGTTCAATCTGTGCATTTCTTTGGTTTCCTTTGTTGAGGTTCTCAACACTGTGTTTGT AGTTTGTACTCACAATTCTCATTTTTTATAATGCTGTGTGTGTACTTTTTGGCAGCATCATTTTAACTGGTGGAAGCACC TTATTTCCTCATTTTGCTGAGAGACTGTAAGTTAGTGCCACTGCACTTTACCATGATGCTGTAAATTTTCTGCACTTTGA TGTGGCCTGTATATTGGTTTGCAAGTTTAAATTGTCGAGTCTAAATTTTGCAGGGAGAAGGAGCTTCGGCCTCTAGTTCC TGATGACTTTCATGTGAAGATAACAAATCAAGAAGAGTAAGTTTTCTTTCCTTGGTAATTTTGTTTCATGGAAGTTCAGA ATTTCAATATAAGCTGTTCTACAGTCCCATTTTAGGTGTTTGGCGTGGAGGATCGCTGTTAGCTTCAAGTCCGGATTTTG AATCAATGTGTGTGACTAAGTCAGAGTATGAGGAGCTTGGTTCTGCTAGATGCCGTAAGAGGTTCTTTCATTAACTACTG ATGCTATCGACACTGCTAGCAAATCTTGTATGTAAGCCTGATATGTACTATTTAGCTACTGTACTAATATTCAAAAAGAT GTCAATTGTTATTCTCTATCATTTTCTAATTCCTGCAGCTTCCTCCCAAACAAATGGGGAATGAGAGAGAAGACTGGGCT GATGGTGTGACCAAGTGCGCAAATGGGGAAATATTGGTTAAACCCATGATATGTTATTGCATAGTTCAGCCATTGTTCTG TCCTTGTATCATTTCAATGGTTTCTTTAGTCTTACTTGGTCCAAGGGGTGAATTCTGGATTATCATCTTCTCTGGAGGGA GTTTTTTTGGGATGCTGTACATGTAGTCTACAATTTTCTAGTGAGCATGATGCACAGATGCAGGCACACTGGTATTTTGG ATCTACTCCCTTTTATCTTCAACAAGTGGAATGTACTTTTAATGTGCCATCAAATGTGGTATTGTAAGGATTTTGCAAAT TGTATATAATATTATTATTTGCATTGTCAGGATGCCCGTAAGCTCTTTTACCTTGCTCTTGAAGCTTGTGTTTCTATCAA TTTAATGGGGTCTTACTGCTATTTTACCCTGAGTAGAATAGTGTTCTTTCTTTTATTTGTTCTTTTTGCCAATTCTGTAT TATTGGAGTGAGTTTGAAATGCTACGTACAATCATTATGCTTTGAATGCCCCTTCACTTGAGTAATTTCTTTTGATAATG GTAGCTTCTCCGGTTATGCTTTACATGTCGTCCCTTCCAAAAGATTTAATGAATCTAAATTCAAAGATGACGGGGAACTC TTGTTCAAAGCTCTGGCAGCATTACAACCGGATTGTTGTAATGGAGAATGAACACGAGTATGTCAATGTGTGATCTATAT ACAGACGGGTTGTAAAAATTATTTGTAAAATCGTCACTATTATGATTACTTTATTACTAGTCCGATAACCCGTGCGCTGC ACGGAATTTTATGTTGAATTTTTTTAATAAATAAATT
CDS sequence (LotjaGi6g1v0021200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCCGAACGTGGTGGTTCTAGACAACGGCGGCGGCCTAGTGAAGGCCGGAATCGGCGGCGAACGCGACCCCTCCGC CATCGTCCCAAACTGCCTCTACCGCCCCTCCGCCGCCAAGAAATGGCTCCACCCAAACCCCCTAAACTCCGCCGCCGAAC AAGACCTCACCTCCGCCGCCGTCCGCCGCCCCATGGACCGCGGCTATCTCATAAACCCCGACCTCGAGCGCGAGATCTGG TCCCACCTCTTCTCCTCCACCCTCCGCATAAACCCTTCACAGTGCTCCCTCCTCGTGACGGAACCGCTCTTCGCTCTCCC CTCCATTCAACGCTCCCTCGACGAGCTCGTCTTCGAGGATTTCAACTTCCGGTCACTCTACGTCGCCGATTCCCCTTCCC TCGTCCACCTCTACGAAGCCAGCCGTGGAAGGCCGAACGGACCTAAGGCGCAGTGCAGTTTGGTGGTGGACTGCGGATTC TCCTTCACCCACGCCGCCCCTGTGTTCCAGAATTTCACCCTCAACTACGCCGTGAAGAGGATTGATCTTGGTGGTAAGGC CCTCACCAACCACCTTAAGGACCTTGTTTCCTTTCGCTCCCTCAATGTCATGGATGAGACTTTCATCATTGATGAAGTGA AAGAGAAGCTCTGCTTTGTTTCCCTTGATCTTCCCCTTCATCTCAATGTGGCCAGGAAGAGTGGGAAAGAGAATCTCCTG AGGTGTACATATGTGCTTCCGGATGGTGTGACATACATGAAGGGGTTTGTTAAATATCCAGATCAGGCGCGCAGATATCT TTCTTTGACGGATGGTGGTCTTCCTTCTCCCTTGGCGGATGTGAATATCCCAGATATTGCTGAGGAGCATCTTCAGGATA CAAAGAAAATTGATTTGACAAAAAATGAATTCGACTTGACAAATGAACGGTTTCTTGTCCCGGAGATGATCTTCCGTCCT GCTGATTTGGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTACAAGCTGTTAATTCCTGCCATCCACATCTCCACCC TGTACTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTATTTCCTCATTTTGCTGAGAGACTGGAGAAGGAGCTTC GGCCTCTAGTTCCTGATGACTTTCATGTGAAGATAACAAATCAAGAAGATCCCATTTTAGGTGTTTGGCGTGGAGGATCG CTGTTAGCTTCAAGTCCGGATTTTGAATCAATGTGTGTGACTAAGTCAGAGTATGAGGAGCTTGGTTCTGCTAGATGCCG TAAGAGGTTCTTTCATTAA
Protein sequence (LotjaGi6g1v0021200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPNVVVLDNGGGLVKAGIGGERDPSAIVPNCLYRPSAAKKWLHPNPLNSAAEQDLTSAAVRRPMDRGYLINPDLEREIW SHLFSSTLRINPSQCSLLVTEPLFALPSIQRSLDELVFEDFNFRSLYVADSPSLVHLYEASRGRPNGPKAQCSLVVDCGF SFTHAAPVFQNFTLNYAVKRIDLGGKALTNHLKDLVSFRSLNVMDETFIIDEVKEKLCFVSLDLPLHLNVARKSGKENLL RCTYVLPDGVTYMKGFVKYPDQARRYLSLTDGGLPSPLADVNIPDIAEEHLQDTKKIDLTKNEFDLTNERFLVPEMIFRP ADLGMNQAGLAECIVQAVNSCHPHLHPVLYESIILTGGSTLFPHFAERLEKELRPLVPDDFHVKITNQEDPILGVWRGGS LLASSPDFESMCVTKSEYEELGSARCRKRFFH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 135 | 134 | 4.7E-30 | ||
| SMART | 3 | 431 | 429 | 5.7E-103 | ||
| Pfam | 4 | 431 | 428 | 1.0E-100 | ||
| CDD | 6 | 195 | 190 | 1.60071E-5 | – | |
| PANTHER | 6 | 430 | 425 | 7.1E-122 | ||
| PANTHER | 6 | 430 | 425 | 7.1E-122 | ||
| SUPERFAMILY | 151 | 431 | 281 | 2.48E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. |
Expression pattern of LotjaGi6g1v0021200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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