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GO:0006338

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Chromatin remodeling
Full defintion Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
Subterm of

Relationships

The relationship of GO:0006338 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCvw
PMID
The yeast RSC chromatin-remodeling complex is required for kinetochore function in chromosome segregation.Hsu JM, Huang J, Meluh PB, Laurent BC
Mol Cell Biol. 2003 May; 23 (9): 3202–15.PMID: 12697820

The accurate segregation of chromosomes requires the kinetochore, a complex protein machine that assembles onto centromeric DNA to mediate attachment of replicated sister chromatids to the mitotic spindle apparatus. This study reveals an important role for the yeast RSC ATP-dependent chromatin-remodeling complex at the kinetochore in chromosome transmission. Mutations in genes encoding two core subunits of RSC, the ATPase Sth1p and the Snf5p homolog Sfh1p, interact genetically with mutations in genes encoding kinetochore proteins and with a mutation in centromeric DNA. RSC also interacts genetically and physically with the histone and histone variant components of centromeric chromatin. Importantly, RSC is localized to centromeric and centromere-proximal chromosomal regions, and its association with these loci is dependent on Sth1p. Both sth1 and sfh1 mutants exhibit altered centromeric and centromere-proximal chromatin structure and increased missegregation of authentic chromosomes. Finally, RSC is not required for centromeric deposition of the histone H3 variant Cse4p, suggesting that RSC plays a role in reconfiguring centromeric and flanking nucleosomes following Cse4p recruitment for proper chromosome transmission.

Associated Lotus transcripts 46

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0048699.1
– PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera] gi|225432860|ref|XP_002283908.1|
GO terms
3
Lj0g3v0068039.1
– PREDICTED: actin-related protein 6-like isoform 2 [Glycine max] gi|356507778|ref|XP_003522641.1|
GO terms
2
Lj0g3v0072839.1
– INO80 complex subunit C [Medicago truncatula] gi|357462405|ref|XP_003601484.1|
GO terms
2
Lj0g3v0163049.1
– Chromatin structure-remodeling complex protein BSH-like [Glycine max] gi|359806723|ref|NP_001241294.1|
GO terms
2
Lj0g3v0226409.1
– PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1|
GO terms
5
Lj0g3v0226409.3
– PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1|
GO terms
5
Lj0g3v0226419.1
– PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1|
GO terms
5
Lj1g3v4831860.1
– PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1|
GO terms
5
Lj1g3v4836220.1
– PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356505649|ref|XP_003521602.1|
GO terms
5
Lj1g3v4836220.2
– SWR1-complex protein [Medicago truncatula] gi|357511425|ref|XP_003626001.1|
GO terms
5
Lj1g3v4849460.1
– PREDICTED: suppressor protein SRP40-like [Cicer arietinum] gi|502112743|ref|XP_004494429.1|
GO terms
2
Lj2g3v0044990.3
– Chromatin structure-remodeling complex protein BSH [Medicago truncatula] gi|357479241|ref|XP_003609906.1|
GO terms
2
Lj3g3v1603840.1
– PREDICTED: SWR1-complex protein 4-like [Glycine max] gi|356572817|ref|XP_003554562.1|
GO terms
5
Lj4g3v0166330.1
– PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Cicer arietinum] gi|502141750|ref|XP_004504620.1|
GO terms
4
Lj4g3v2017220.1
– SNF5 [Pisum sativum] gi|107857310|gb|ABF85669.1|
GO terms
2
Lj4g3v2371620.1
– Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1|
GO terms
5
Lj4g3v2371620.2
– Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1|
GO terms
5
Lj5g3v1135090.1
– PREDICTED: actin-related protein 9-like [Cicer arietinum] gi|502115892|ref|XP_004495311.1|
GO terms
2
Lj5g3v1145190.1
– PREDICTED: actin-related protein 9-like [Cicer arietinum] gi|502115892|ref|XP_004495311.1|
GO terms
2
Lj6g3v1919360.1
– Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1|
GO terms
5
LotjaGi1g1v0670100.1
– DNA helicase INO80; TAIR: AT3G57300.1 DNA helicase INO80-like protein; Swiss-Prot: sp|Q8RXS6|INO80_ARATH DNA helicase INO80; TrEMBL-Plants: tr|I1N8X6|I1N8X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0670100
GO terms
6
LotjaGi1g1v0670100.2
– DNA helicase INO80; TAIR: AT3G57300.1 DNA helicase INO80-like protein; Swiss-Prot: sp|Q8RXS6|INO80_ARATH DNA helicase INO80; TrEMBL-Plants: tr|I1N8X6|I1N8X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0670100
GO terms
6
LotjaGi1g1v0670100.3
– DNA helicase; TAIR: AT3G57300.1 DNA helicase INO80-like protein; Swiss-Prot: sp|Q8RXS6|INO80_ARATH DNA helicase INO80; TrEMBL-Plants: tr|I1N8X6|I1N8X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0670100
GO terms
6
LotjaGi1g1v0670100.4
– DNA helicase; TAIR: AT3G57300.1 DNA helicase INO80-like protein; Swiss-Prot: sp|Q8RXS6|INO80_ARATH DNA helicase INO80; TrEMBL-Plants: tr|I1N8X6|I1N8X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0670100
GO terms
6
LotjaGi1g1v0757000.1
– SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1; TAIR: AT2G47210.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q8VZL6|SWC4_ARATH SWR1-complex protein 4; TrEMBL-Plants: tr|G7KTN9|G7KTN9_MEDTR DNA methyltransferase 1-associated protein; Found in the gene: LotjaGi1g1v0757000
GO terms
5
LotjaGi1g1v0757000.2
– SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1; TAIR: AT2G47210.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q8VZL6|SWC4_ARATH SWR1-complex protein 4; TrEMBL-Plants: tr|I1NBE9|I1NBE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0757000
GO terms
5
LotjaGi1g1v0759100.1
– HIT zinc finger,PAPA-1-like conserved region, putative; TAIR: AT2G47350.1 HIT zinc finger and PAPA-1-like domain-containing protein; Swiss-Prot: sp|Q99PT3|IN80B_MOUSE INO80 complex subunit B; TrEMBL-Plants: tr|K7KGE4|K7KGE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0759100
GO terms
2
LotjaGi2g1v0010000_LC.1
– Bushy growth protein; TAIR: AT3G17590.3 transcription regulatory protein SNF5, putative (BSH); Swiss-Prot: sp|P93045|BSH_ARATH Chromatin structure-remodeling complex protein BSH; TrEMBL-Plants: tr|A0A0L9TSB3|A0A0L9TSB3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0010000_LC
GO terms
2
LotjaGi4g1v0017200.1
– Vacuolar protein sorting-associated protein 72 like; TAIR: AT2G36740.1 DNA binding protein SWC2; Swiss-Prot: sp|F4IP06|SWC2_ARATH SWR1 complex subunit 2; TrEMBL-Plants: tr|A0A1J7IHB7|A0A1J7IHB7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0017200
GO terms
4
LotjaGi4g1v0317300.1
– Bushy growth protein; TAIR: AT3G17590.1 transcription regulatory protein SNF5, putative (BSH); Swiss-Prot: sp|P93045|BSH_ARATH Chromatin structure-remodeling complex protein BSH; TrEMBL-Plants: tr|I3S717|I3S717_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0317300
GO terms
2
LotjaGi4g1v0345700.1
– DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp|F4JY24|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr|A0A1J7I094|A0A1J7I094_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700
GO terms
5
LotjaGi4g1v0345700.2
– DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp|F4JY24|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr|I1KN24|I1KN24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700
GO terms
5
LotjaGi4g1v0345700.3
– DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp|F4JY24|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr|A0A1J7I094|A0A1J7I094_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700
GO terms
5
LotjaGi4g1v0345700.4
– DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp|F4JY24|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr|A0A1J7I094|A0A1J7I094_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700
GO terms
5
LotjaGi5g1v0183500.1
– Actin-related protein; TAIR: AT5G43500.2 actin-related protein 9; Swiss-Prot: sp|Q9LSW2|ARP9_ARATH Actin-related protein 9; TrEMBL-Plants: tr|K7LK97|K7LK97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0183500
GO terms
2
LotjaGi5g1v0242300.1
– SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1; TAIR: AT2G47210.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q8VZL6|SWC4_ARATH SWR1-complex protein 4; TrEMBL-Plants: tr|V4U6K6|V4U6K6_9ROSI Uncharacterized protein; Found in the gene: LotjaGi5g1v0242300
GO terms
5
LotjaGi6g1v0001300.1
– Armadillo repeat-containing protein lfr; TAIR: AT3G22990.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9LS90|LFR_ARATH Armadillo repeat-containing protein LFR; TrEMBL-Plants: tr|I1JB49|I1JB49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0001300
GO terms
3
LotjaGi6g1v0001300.2
– Armadillo repeat-containing protein lfr; TAIR: AT3G22990.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9LS90|LFR_ARATH Armadillo repeat-containing protein LFR; TrEMBL-Plants: tr|I1JB49|I1JB49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0001300
GO terms
3
LotjaGi6g1v0021200.1
– Actin-related protein; TAIR: AT3G33520.1 actin-related protein 6; Swiss-Prot: sp|Q8LGE3|ARP6_ARATH Actin-related protein 6; TrEMBL-Plants: tr|I1JUI1|I1JUI1_SOYBN Actin-related protein 6; Found in the gene: LotjaGi6g1v0021200
GO terms
2
LotjaGi6g1v0021200.2
– Actin-related protein; TAIR: AT3G33520.1 actin-related protein 6; Swiss-Prot: sp|Q8LGE3|ARP6_ARATH Actin-related protein 6; TrEMBL-Plants: tr|I1JUI1|I1JUI1_SOYBN Actin-related protein 6; Found in the gene: LotjaGi6g1v0021200
GO terms
2
LotjaGi6g1v0026800.1
– INO80 complex subunit C; TAIR: AT4G38495.1 chromatin-remodeling complex subunit; Swiss-Prot: sp|Q8BHA0|IN80C_MOUSE INO80 complex subunit C; TrEMBL-Plants: tr|I3SJK2|I3SJK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0026800
GO terms
2
LotjaGi6g1v0026800.2
– INO80 complex subunit C; TAIR: AT4G38495.1 chromatin-remodeling complex subunit; Swiss-Prot: sp|Q8BHA0|IN80C_MOUSE INO80 complex subunit C; TrEMBL-Plants: tr|I3SJK2|I3SJK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0026800
GO terms
2
LotjaGi6g1v0108400.1
– Zinc finger HIT domain-containing protein 1 like; TAIR: AT5G37055.1 HIT-type Zinc finger family protein; Swiss-Prot: sp|Q9FHW2|SWC6_ARATH SWR1 complex subunit 6; TrEMBL-Plants: tr|V7BLH2|V7BLH2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0108400
GO terms
2
LotjaGi6g1v0131300_LC.1
– Bushy growth protein; TAIR: AT3G17590.3 transcription regulatory protein SNF5, putative (BSH); Swiss-Prot: sp|P93045|BSH_ARATH Chromatin structure-remodeling complex protein BSH; TrEMBL-Plants: tr|I3S717|I3S717_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0131300_LC
GO terms
2
LotjaGi6g1v0306600.1
– DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|I1M1D0|I1M1D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0306600
GO terms
5
LotjaGi6g1v0306600.2
– DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|A0A0B2RF13|A0A0B2RF13_GLYSO Putative chromatin-remodeling complex ATPase chain; Found in the gene: LotjaGi6g1v0306600
GO terms
5

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0016818
Molecular function Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1 2.17