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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0021200 |
| Transcript ID | LotjaGi6g1v0021200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-related protein; TAIR: AT3G33520.1 actin-related protein 6; Swiss-Prot: sp|Q8LGE3|ARP6_ARATH Actin-related protein 6; TrEMBL-Plants: tr|I1JUI1|I1JUI1_SOYBN Actin-related protein 6; Found in the gene: LotjaGi6g1v0021200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3929193..3932554) extracted from Lotus japonicus Gifu genome v1.2.
TCGCAAATGTCCCCGAACGTGGTGGTTCTAGACAACGGCGGCGGCCTAGTGAAGGCCGGAATCGGCGGCGAACGCGACCC CTCCGCCATCGTCCCAAACTGCCTCTACCGCCCCTCCGCCGCCAAGAAATGGCTCCACCCAAACCCCCTAAACTCCGCCG CCGAACAAGACCTCACCTCCGCCGCCGTCCGCCGCCCCATGGACCGCGGCTATCTCATAAACCCCGACCTCGAGCGCGAG ATCTGGTCCCACCTCTTCTCCTCCACCCTCCGCATAAACCCTTCACAGTGCTCCCTCCTCGTGACGGAACCGCTCTTCGC TCTCCCCTCCATTCAACGCTCCCTCGACGAGCTCGTCTTCGAGGATTTCAACTTCCGGTCACTCTACGTCGCCGATTCCC CTTCCCTCGTCCACCTCTACGAAGCCAGCCGTGGAAGGCCGAACGGACCTAAGGCGCAGTGCAGTTTGGTGGTGGACTGC GGATTCTCCTTCACCCACGCCGCCCCTGTGTTCCAGAATTTCACCCTCAACTACGCCGTGAAGAGGATTGATCTTGGTGG TAAGGCCCTCACCAACCACCTTAAGGACCTTGTTTCCTTTCGCTCCCTCAATGTCATGGATGAGACTTTCATCATTGATG AAGTGAAAGAGAAGCTCTGCTTTGTTTCCCTTGATCTTCCCCTTCATCTCAATGTGGCCAGGTTTCATCTCTCTAAACCC ATGTTTTTTCTGTTAAATCATGCTTTCAGTAGTCAACTTAATTTTTGTTTTTGTTTATGTTAAATCAGTTGCCAGTAAAA GATTTATTTGTAAGCTGGTTCTTAGAACATAAATGTTCATTTACAAGCTATGTAAGGAGTTAATGTTGGAAAGTTATCAT ATCATCAACCAACAATCAATATTGGTGGTAGGCAAGTTAGATCCTTGTAGGAGTCGGGGCACTAGTTCGAACTCCAGGAA AGTCATTTGTTAGGGGACTGCCACAATTTTACGAATGACTGAAAAGACAAAAAAAAAAAGAGCTTATGATGGGTTAGGGG TAGTTTACTTATAAATTATAATGCAAGAATTAGTGTGTCTTTGGAAATCTACAAGATTTCCAAATTGGCAGGAGAAGTGA TTCTGGGATGATTATTGGTGAATCCAAACATATTGTAACATTGCTATCAAAAGCAAAAGCATATCAAAATAACTTATCAC CTAAATATTCATTGATATAATAAAAGCTCATTCTTATCCCAGTGTTTGGATTCTGTTGAATGGAATAACTTATCACCTAA TTATTTGTTTATATAAGCTCATTCGTACGGTCTTACCAGTACCACGTAGTGTGTGCTTGGATTTCTGTTGAATTCAATGC TGATCCACGCTAAACTCAACTCTACAAAGTCTTGCTTCTTCATTTGTACGTTGAGATTTGTGAATTCACTTTTGCATTGG TGCAAGTGGAGGACTAAGCATGCACATAAACGTTTAGTTATAAGCTATATAAGCTCTTAATATTAGAAAATTATCAAAAT AAGCTCGTAATGGTTTGTAGATAGTTTACTTAAAATGCAAGAGTTGTTTGCTTTACTTATCAAAACATATGTGTAAGTGG AAATAGAGTAGAATTTTATGTTGGAGGAAGAAGTGGTTGTGGGAGGTTCAACGAATTCAAACACACTGCAAAGTTACTCA TAAAAGCAAAAGCATATGGAAACTAATATGATATATCTTTCCAAGGTTGAGGATGAAAATAAGGTTTATGCAAAAGGGTT TACTCGTGGCATTATTTATAGGCACCATAATAGAATACATGATTCTGACTGTGTTGTGCTTTATGATAGGAAGAGTGGGA AAGAGAATCTCCTGAGGTGTACATATGTGCTTCCGGATGGTGTGACATACATGAAGGGGTTTGTTAAATATCCAGATCAG GCGCGCAGATATCTTTCTTTGACGGATGGTGGTCTTCCTTCTCCCTTGGCGGATGTGAATATCCCAGATATTGCTGAGGA GCATCTTCAGGATACAAAGAAAATTGATTTGACAAAAAATGTATTTTCTTGCATTTCTTTTTGTACCATGGAATTCATTT CTTTTGTCTGTTATTTTAATAACTGTGTTCTGTAGGAATTCGACTTGACAAATGAACGGTTTCTTGTCCCGGAGATGATC TTCCGTCCTGCTGATTTGGGTCTGTCACTTTTATTTAATTCTAGTACTGTTTTCAAATGAAGTACAACTTCAGTTAGTTC TTTGGTTGATGACTTTCTTAAGTGACAGTAATTGAAGGAGGTTCTTAGTCTAATCTGATCATTTTCCCATTGGTATTAGT TGTTTCTTCTGTTCTCTATAAAAAAGCTGAACGGAAAGGTTTGCAGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGT ACAAGCTGTTAATTCCTGCCATCCACATCTCCACCCTGTACTCTATGAAAGGTAACCAATTGAAAGCAATTGATTTGATG CTGTGTGTTAGGACCGATGACCCAATCGCAGGTCCAAGGGAATCACTGGCTCAAGAGGGGAGTGGACCCAAGATATGGAG AGTATATTCTAGAAGGGGTAAAGGGGGAAATAGGGCTAAGGGATAACTAACTAACAGCCAGCTGTTGAGAGAGAGGGTGA GAGCTGATTGTAATCCCAGAGTATAAGGGACGTTGAGGAAGGTAGAGAGAGTATCTTATGTAAACTAGTGCATAGAAATG AATAGGAAGCTTTGAGCTTCCTATAGGAGCCTAGCTCTGGTCAGATTCAGGAGATATTACTCCCTTTCTGTAGTTCCCAA ATCCATTAATAAGCAATCAAATACATTTTTAGTTCAATCTGTGCATTTCTTTGGTTTCCTTTGTTGAGGTTCTCAACACT GTGTTTGTAGTTTGTACTCACAATTCTCATTTTTTATAATGCTGTGTGTGTACTTTTTGGCAGCATCATTTTAACTGGTG GAAGCACCTTATTTCCTCATTTTGCTGAGAGACTGTAAGTTAGTGCCACTGCACTTTACCATGATGCTGTAAATTTTCTG CACTTTGATGTGGCCTGTATATTGGTTTGCAAGTTTAAATTGTCGAGTCTAAATTTTGCAGGGAGAAGGAGCTTCGGCCT CTAGTTCCTGATGACTTTCATGTGAAGATAACAAATCAAGAAGAGTAAGTTTTCTTTCCTTGGTAATTTTGTTTCATGGA AGTTCAGAATTTCAATATAAGCTGTTCTACAGTCCCATTTTAGGTGTTTGGCGTGGAGGATCGCTGTTAGCTTCAAGTCC GGATTTTGAATCAATGTGTGTGACTAAGTCAGAGTATGAGGAGCTTGGTTCTGCTAGATGCCGTAAGAGGTTCTTTCATT AA
CDS sequence (LotjaGi6g1v0021200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCCGAACGTGGTGGTTCTAGACAACGGCGGCGGCCTAGTGAAGGCCGGAATCGGCGGCGAACGCGACCCCTCCGC CATCGTCCCAAACTGCCTCTACCGCCCCTCCGCCGCCAAGAAATGGCTCCACCCAAACCCCCTAAACTCCGCCGCCGAAC AAGACCTCACCTCCGCCGCCGTCCGCCGCCCCATGGACCGCGGCTATCTCATAAACCCCGACCTCGAGCGCGAGATCTGG TCCCACCTCTTCTCCTCCACCCTCCGCATAAACCCTTCACAGTGCTCCCTCCTCGTGACGGAACCGCTCTTCGCTCTCCC CTCCATTCAACGCTCCCTCGACGAGCTCGTCTTCGAGGATTTCAACTTCCGGTCACTCTACGTCGCCGATTCCCCTTCCC TCGTCCACCTCTACGAAGCCAGCCGTGGAAGGCCGAACGGACCTAAGGCGCAGTGCAGTTTGGTGGTGGACTGCGGATTC TCCTTCACCCACGCCGCCCCTGTGTTCCAGAATTTCACCCTCAACTACGCCGTGAAGAGGATTGATCTTGGTGGTAAGGC CCTCACCAACCACCTTAAGGACCTTGTTTCCTTTCGCTCCCTCAATGTCATGGATGAGACTTTCATCATTGATGAAGTGA AAGAGAAGCTCTGCTTTGTTTCCCTTGATCTTCCCCTTCATCTCAATGTGGCCAGGAAGAGTGGGAAAGAGAATCTCCTG AGGTGTACATATGTGCTTCCGGATGGTGTGACATACATGAAGGGGTTTGTTAAATATCCAGATCAGGCGCGCAGATATCT TTCTTTGACGGATGGTGGTCTTCCTTCTCCCTTGGCGGATGTGAATATCCCAGATATTGCTGAGGAGCATCTTCAGGATA CAAAGAAAATTGATTTGACAAAAAATGAATTCGACTTGACAAATGAACGGTTTCTTGTCCCGGAGATGATCTTCCGTCCT GCTGATTTGGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTACAAGCTGTTAATTCCTGCCATCCACATCTCCACCC TGTACTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTATTTCCTCATTTTGCTGAGAGACTGGAGAAGGAGCTTC GGCCTCTAGTTCCTGATGACTTTCATGTGAAGATAACAAATCAAGAAGATCCCATTTTAGGTGTTTGGCGTGGAGGATCG CTGTTAGCTTCAAGTCCGGATTTTGAATCAATGTGTGTGACTAAGTCAGAGTATGAGGAGCTTGGTTCTGCTAGATGCCG TAAGAGGTTCTTTCATTAA
Protein sequence (LotjaGi6g1v0021200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPNVVVLDNGGGLVKAGIGGERDPSAIVPNCLYRPSAAKKWLHPNPLNSAAEQDLTSAAVRRPMDRGYLINPDLEREIW SHLFSSTLRINPSQCSLLVTEPLFALPSIQRSLDELVFEDFNFRSLYVADSPSLVHLYEASRGRPNGPKAQCSLVVDCGF SFTHAAPVFQNFTLNYAVKRIDLGGKALTNHLKDLVSFRSLNVMDETFIIDEVKEKLCFVSLDLPLHLNVARKSGKENLL RCTYVLPDGVTYMKGFVKYPDQARRYLSLTDGGLPSPLADVNIPDIAEEHLQDTKKIDLTKNEFDLTNERFLVPEMIFRP ADLGMNQAGLAECIVQAVNSCHPHLHPVLYESIILTGGSTLFPHFAERLEKELRPLVPDDFHVKITNQEDPILGVWRGGS LLASSPDFESMCVTKSEYEELGSARCRKRFFH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 135 | 134 | 4.7E-30 | ||
| SMART | 3 | 431 | 429 | 5.7E-103 | ||
| Pfam | 4 | 431 | 428 | 1.0E-100 | ||
| CDD | 6 | 195 | 190 | 1.60071E-5 | – | |
| PANTHER | 6 | 430 | 425 | 7.1E-122 | ||
| PANTHER | 6 | 430 | 425 | 7.1E-122 | ||
| SUPERFAMILY | 151 | 431 | 281 | 2.48E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. |
Expression pattern of LotjaGi6g1v0021200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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