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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0029200 |
| Transcript ID | LotjaGi6g1v0029200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Choline-phosphate cytidylyltransferase; TAIR: AT2G32260.1 phosphorylcholine cytidylyltransferase; Swiss-Prot: sp|Q9ZV56|CCT1_ARATH Choline-phosphate cytidylyltransferase 1; TrEMBL-Plants: tr|I1LXL5|I1LXL5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0029200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:5170049..5172780) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAAGTGAGATAGAAACATTCAAAATGGCATCTCCTACACAAGATCGGCCAATTCGTGTGTATGCTGATGGCATTTAT GATCTCTTCCACTTTGGTCATGCTCGCTCTCTTGAGCAGGCAAAGAAATCGTATGCTTATTATTTTTTTTTGTTTTGTGT GTGTGTGTTGATTCTATATGGATGTAAAAGAAATTGCTGTTGTAATTGCATGTACCATTTTATAATTTTTTGACCTTTAT CACTTAATTGATAATGACAATGTTTTGGAGTTGCAGGTTTCCCAACACGTACCTTCTCGTTGGATGTTGTAGTGATGCAG TTACAAAAAAGTTCAAAGGCAAAACTGTCATGACAGAAGATGAACGTTATGAGTCACTTCGTCATTGCAAGTATTAATAT TACTCTTCTTTTCCTTTTTCATGTTATGAGTAAATGTAAAATCTTGAAGGGATATGACATTAATATTTAAGAAATCGTGG CCTTTAAATAAGTTTAATGATTTAGAATGTAAATTAAATAACTTATAGATAGTTGGTAGATATTAGAACTATTGATTAGT GAGTTAGTTTGTTATGTAAGTGGTTAATTAGATATGTGAGTGTGCTATTAGTTAGTTGCTATTGCACTGTATAAACAATA AACAGTACCCACATTACTTTTTATAATGATTGATTACTGGTTGAAATACTTTTTATTTGCACATCCTCTTATTCTTGATT ATGTTGAATGAATTTATGTTCCTTACAGTCTAATCACAACTAGATAGTATAGGGGAAGAAAACAACACCATATATTATAT GAATTATTGTTTGGTTGTGAACAGATGGGTGGATGAAGTGATTCCAGGTGCACCTTGGGTTGTCAATCAAGAGTTTCTTG ACAAGCACAACATTGAATATGTTGCTCACGACTCTCTTCCGTAAGATTAATTTATTTTACTTTACCTCTCTATTTACACA AGTTATGAAATATAAGTGAGATTCTTGCCTGATAAGAATACTAAGTAAAAATATTAACATGATATTAAAATAAGTCTCAC AAGAATTTAATTATTTCTAATATGGATTTGTCTACCATGGAGTGGACCAAGAAAATTTTGGTGCACAAGTTAAAAAGGTT TCTCTGTAAATTAGTTTTAAAACTTACGAGTATCGTATGAATAACTTGTACTATATGCTAGTGGTAAAAATATGATTTAA TGGTGTAACATATTTTAGCATTCTCAACCATATAATTTCTTTATATTATAGAGTAAATTTTTTAGTAACACTTTTATTGT TCTATAATCATTATTATTTGAATACATCATGAATTTGAATTTTCATCGAATTTTTACTTCATGAAATTTGTTACATATCA ATATTTATACAAATATGTACGTTGTTAAAAGGTAATTTTCACATATCAATTATACTTCCACCTTATCAAAATATAAAGAG AAAAGAGATAAATAAGTGTTATGATAGGTGATGTGATAGGAAATGCAGAGAGAGAGAGAGAGGGATAAGAAGAAAAATGA GTGAAAATGAGACATGAGAGAAAGTAAGGTGTGAATATATCAAACTCTACTAATAATTGTTGAGGACTCGATCATCGTTT ATGATAAGAACTTTCACACTGATAGTCTTGAGCCCCAGATCCACAATTGATCATGTATCAATAATAACTTAATTATCAGT CCAATGGTCACCAAAGAAATTTACGATCCCTTAGATAATTATAGAAATTGGTTCACCTGAAGATATTAGTTCATGTCTCA ATTACGGTTGACATGTTGCATCACCTTAATCAATGACTATAGAGATTATGAAAGATATTAAAAGCCACCTAGTTTGGTTT TCAAGCAAAGTAAATTAAATCATTCACAATTGTTTTCAGTTATACCTTATTATCCTGTTTGCGAATGATGATAGCATTCT TTTTCTTAACCAATCGTAGTATTATTTTATGTATACTGTGGATTGTAAAAGTTGGGAAGATAGGACCATGTTTTCTTCAA GTCGATAAAAGGATGTCGAAGACACAAAGAAATGGTTCTTGATTGGCAGTCATATAACAAGTTGATGTGGAAGACTTAGG TTATAATACTGATAACATGGCGACGCTACAATCTACACTTCATAGTTAATATATTATAATAGATGAAATTTTTTATACTC ATCTTAGTATGACATATCTAGAAGGTATTGTAGCAACTAGACTATATATTCTTATATTAATTATTTTCCATGACTATCGT ATGCAAGTTTTGTACTTTTATTTATCTTGATATTGACACATCTAGATAAGGCCTTGTTTAATGTTTATACCTATTTTTAC ATGTCTTTAAAATAAATGAGAAGATAAAAATAATTATGAATAAAATAAAATGAATGTATAATCTTTTTAATTTGGTAAAA AGTTAAATGGATGATCTAATTATCATATTTATTGACAGATATGCTGACACTAGTGGTGCTGCAAATGATGTTTATGAATT TGTAAGTAAGGGAATATTTTCTAAATTTCTTAAACAATTTGTTGTCACTTTCTCCTACATATGTAATGTGTTGTATGCTT TTCGGTGCAGGTTAAGTCTGTTGGGAAATTTAAAGAAACCCAACGGACCGAAGGAATATCTACATCTGACTTGATAATGA GGATTGTTAAAGATTATAATCAGTATGTGTTGCGGAACTTGGATCGGGGTTACTCAAGAAAAGACCTTGGTGTGAGCTAT GTTAAGGTATGA
CDS sequence (LotjaGi6g1v0029200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTCCTACACAAGATCGGCCAATTCGTGTGTATGCTGATGGCATTTATGATCTCTTCCACTTTGGTCATGCTCG CTCTCTTGAGCAGGCAAAGAAATCGTTTCCCAACACGTACCTTCTCGTTGGATGTTGTAGTGATGCAGTTACAAAAAAGT TCAAAGGCAAAACTGTCATGACAGAAGATGAACGTTATGAGTCACTTCGTCATTGCAAATGGGTGGATGAAGTGATTCCA GGTGCACCTTGGGTTGTCAATCAAGAGTTTCTTGACAAGCACAACATTGAATATGTTGCTCACGACTCTCTTCCATATGC TGACACTAGTGGTGCTGCAAATGATGTTTATGAATTTGTTAAGTCTGTTGGGAAATTTAAAGAAACCCAACGGACCGAAG GAATATCTACATCTGACTTGATAATGAGGATTGTTAAAGATTATAATCAGTATGTGTTGCGGAACTTGGATCGGGGTTAC TCAAGAAAAGACCTTGGTGTGAGCTATGTTAAGGTATGA
Protein sequence (LotjaGi6g1v0029200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPTQDRPIRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDAVTKKFKGKTVMTEDERYESLRHCKWVDEVIP GAPWVVNQEFLDKHNIEYVAHDSLPYADTSGAANDVYEFVKSVGKFKETQRTEGISTSDLIMRIVKDYNQYVLRNLDRGY SRKDLGVSYVKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 172 | 172 | 2.3E-81 | ||
| PANTHER | 5 | 171 | 167 | 2.2E-113 | – | |
| PANTHER | 5 | 171 | 167 | 2.2E-113 | – | |
| CDD | 8 | 159 | 152 | 1.00876E-91 | ||
| SUPERFAMILY | 11 | 142 | 132 | 5.98E-24 | – | |
| TIGRFAM | 11 | 78 | 68 | 1.2E-20 | ||
| Pfam | 13 | 142 | 130 | 1.4E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. |
Expression pattern of LotjaGi6g1v0029200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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