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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0040800 |
| Transcript ID | LotjaGi6g1v0040800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC(ATP-binding) family transporter; TAIR: AT2G31970.1 DNA repair-recombination protein (RAD50); Swiss-Prot: sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50; TrEMBL-Plants: tr|I1MYA5|I1MYA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0040800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7882941..7884041) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGGGAGGAATAATGCTAGTATTTCCTAAGAGAGGAATTCCAGTACACTTAAATACATTTTCTGTTTGCAATACACTA TTTCCTAGGGTCATTAATTGAACAAATTTCCACTAATCAAAATCTTCATTTATTTGTGTTCCATATGATTCATCTTTCAG AGCTCTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATCATTAGGGAATTGTGGCAACAGACTTATAGAG GACAGGATATAGACTACATTAGTATTCATTCAGATTCCGAAGGTGCCGGCACCCGATCCTACAGCTACAGGGTTTGTCAT CGTTGCATTGCAACACCGGTTCCTTTGAAAGAGCTGTCTAATTTTCTCATACAAATTTGAAATACTGTTTCTTTTGCATT CCACACAGGTTCTCATGCAGACTGGCGATGCAGAGTTAGAAATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTAGGTTAT GTTATCATTAGAAGAATCACTATATTAAGTATTCTTTTTTATTTTTAATCAACAATAGGGATAAGTTAGCGTGACTTAAT TGCAAGGTTCACCATTCAGGTACTGGCATCTCTTATCATTCGTTTGGCCTTAGCTGAAACGTTTTGCCTCAACTGTGGAA TACTCGCATTGGATGAACCAACCACAAACTTGGATGGACCAAATGCTGAAAGTCTGGCTGCTGCTCTCCTAAGGTATGAA TAGATTGTCTAGTTCTGTGTAACTATGCACTTTGTGTACATGTTGCACTTCAAAAGTAAAAGGATTTTTATAGAAATGGA CGCCAGAACATGCTTTCATGTTTTTGCCTAGTAAACTGTGTTTTTCTATTTTTCAACTATAGTAATGCTTGACAATGTAA TTGTAACAACTATCCAAACATATCTTAAATTGCCAATAATGAGTTAATTGGATGTTTATCCACTGTATTCTTCGTTGTTA ACATGCAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGATGAGCGTTTTGCACA ACTGATTGGTCGGCGCCAGCATGCAGAGAGATATTATCGAGTCGCGAAAGATGATCAGTAA
CDS sequence (LotjaGi6g1v0040800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATCATTAGGGAATTGTGGCAACAGACTTATAGAGGACAGGA TATAGACTACATTAGTATTCATTCAGATTCCGAAGGTGCCGGCACCCGATCCTACAGCTACAGGGTTCTCATGCAGACTG GCGATGCAGAGTTAGAAATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTACTGGCATCTCTTATCATTCGTTTGGCCTTA GCTGAAACGTTTTGCCTCAACTGTGGAATACTCGCATTGGATGAACCAACCACAAACTTGGATGGACCAAATGCTGAAAG TCTGGCTGCTGCTCTCCTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGATG AGCGTTTTGCACAACTGATTGGTCGGCGCCAGCATGCAGAGAGATATTATCGAGTCGCGAAAGATGATCAGTAA
Protein sequence (LotjaGi6g1v0040800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYRVLMQTGDAELEMRGRCSAGQKVLASLIIRLAL AETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGRRQHAERYYRVAKDDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 157 | 157 | 1.2E-102 | – | |
| Gene3D | 2 | 156 | 155 | 6.1E-28 | – | |
| SUPERFAMILY | 5 | 145 | 141 | 1.47E-19 | ||
| Pfam | 44 | 111 | 68 | 3.0E-6 | – | |
| CDD | 58 | 157 | 100 | 2.69148E-45 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0040800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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