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GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Telomere maintenance | Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Cellular component | Mre11 complex | Trimeric protein complex that possesses endonuclease activity; involved in meiotic recombination, DNA repair and checkpoint signaling. In Saccharomyces cerevisiae, the complex comprises Mre11p, Rad50p, and Xrs2p; complexes identified in other species generally contain proteins orthologous to the Saccharomyces cerevisiae proteins. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50-like [Vitis vinifera] gi|359477881|ref|XP_002266665.2| | 9 | ||
| – | DNA repair protein RAD50; TAIR: AT2G31970.1 DNA repair-recombination protein (RAD50); Swiss-Prot: sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50; TrEMBL-Plants: tr|A0A151SQF0|A0A151SQF0_CAJCA DNA repair protein RAD50; Found in the gene: LotjaGi6g1v0040800 | 13 | ||
| – | ABC(ATP-binding) family transporter; TAIR: AT2G31970.1 DNA repair-recombination protein (RAD50); Swiss-Prot: sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50; TrEMBL-Plants: tr|I1MYA5|I1MYA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0040800 | 6 | ||
| – | ABC(ATP-binding) family transporter; TAIR: AT2G31970.1 DNA repair-recombination protein (RAD50); Swiss-Prot: sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50; TrEMBL-Plants: tr|I1MYA5|I1MYA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0040800 | 6 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd03240 | CDD | 1 | 25.00 |