Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0040800 |
| Transcript ID | LotjaGi6g1v0040800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC(ATP-binding) family transporter; TAIR: AT2G31970.1 DNA repair-recombination protein (RAD50); Swiss-Prot: sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50; TrEMBL-Plants: tr|I1MYA5|I1MYA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0040800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7883038..7884206) extracted from Lotus japonicus Gifu genome v1.2.
TTGAACAAATTTCCACTAATCAAAATCTTCATTTATTTGTGTTCCATATGATTCATCTTTCAGAGCTCTGATGCGCTTCC ACACAATGAAAATGGAAGAAATCAACAAAATCATTAGGGAATTGTGGCAACAGACTTATAGAGGACAGGATATAGACTAC ATTAGTATTCATTCAGATTCCGAAGGTGCCGGCACCCGATCCTACAGCTACAGGGTTTGTCATCGTTGCATTGCAACACC GGTTCCTTTGAAAGAGCTGTCTAATTTTCTCATACAAATTTGAAATACTGTTTCTTTTGCATTCCACACAGGTTCTCATG CAGACTGGCGATGCAGAGTTAGAAATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTAGGTTATGTTATCATTAGAAGAAT CACTATATTAAGTATTCTTTTTTATTTTTAATCAACAATAGGGATAAGTTAGCGTGACTTAATTGCAAGGTTCACCATTC AGGTACTGGCATCTCTTATCATTCGTTTGGCCTTAGCTGAAACGTTTTGCCTCAACTGTGGAATACTCGCATTGGATGAA CCAACCACAAACTTGGATGGACCAAATGCTGAAAGTCTGGCTGCTGCTCTCCTAAGGTATGAATAGATTGTCTAGTTCTG TGTAACTATGCACTTTGTGTACATGTTGCACTTCAAAAGTAAAAGGATTTTTATAGAAATGGACGCCAGAACATGCTTTC ATGTTTTTGCCTAGTAAACTGTGTTTTTCTATTTTTCAACTATAGTAATGCTTGACAATGTAATTGTAACAACTATCCAA ACATATCTTAAATTGCCAATAATGAGTTAATTGGATGTTTATCCACTGTATTCTTCGTTGTTAACATGCAGGATCATGGA GGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGATGAGCGTTTTGCACAACTGATTGGTCGGCGCC AGCATGCAGAGAGATATTATCGAGTCGCGAAAGATGATCAGTAAGGACAGCAATACTACTAATGTTTCATTTGTTTTCAT GTCATTTCTGTATCGCGTGCTTCATCATTATTGCATCAGAAAATTATGTGGACAGTGCTTTCCTTAACTTGTATGTCTTG CGTTTGCAGTCAGCACAGTATTATCGAATCTCAAGAGATATTTGACTGA
CDS sequence (LotjaGi6g1v0040800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATCATTAGGGAATTGTGGCAACAGACTTATAGAGGACAGGA TATAGACTACATTAGTATTCATTCAGATTCCGAAGGTGCCGGCACCCGATCCTACAGCTACAGGGTTCTCATGCAGACTG GCGATGCAGAGTTAGAAATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTACTGGCATCTCTTATCATTCGTTTGGCCTTA GCTGAAACGTTTTGCCTCAACTGTGGAATACTCGCATTGGATGAACCAACCACAAACTTGGATGGACCAAATGCTGAAAG TCTGGCTGCTGCTCTCCTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGATG AGCGTTTTGCACAACTGATTGGTCGGCGCCAGCATGCAGAGAGATATTATCGAGTCGCGAAAGATGATCATCAGCACAGT ATTATCGAATCTCAAGAGATATTTGACTGA
Protein sequence (LotjaGi6g1v0040800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYRVLMQTGDAELEMRGRCSAGQKVLASLIIRLAL AETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGRRQHAERYYRVAKDDHQHS IIESQEIFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 166 | 166 | 5.3E-107 | – | |
| Gene3D | 2 | 162 | 161 | 5.0E-28 | – | |
| SUPERFAMILY | 5 | 145 | 141 | 1.57E-19 | ||
| Pfam | 44 | 112 | 69 | 3.1E-6 | – | |
| CDD | 58 | 161 | 104 | 2.35924E-47 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0040800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…