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LotjaGi6g1v0042500.1

Overview

Field Value
Gene ID LotjaGi6g1v0042500
Transcript ID LotjaGi6g1v0042500.1
Lotus japonicus genome version Gifu v1.2
Description AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7FS39|A0A1J7FS39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0042500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:8142381..8143386) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTTTTCAATTTTCCTCTTTGTCATTTTTTCTGGTCAGCACCATGACCAGGAGAAAGGTGAAACTTGCATTCATAGTC AATGACTCCGCAAGGAAGGCAACATACAAGAAAAGGAAGAAGGGTTTGATGAAGAAGGTGGATGAACTAACCACCCTTTG TGGAATTGAAGCATGTGCTATAATTTATAGCCCATTCGATCCTCAACCTGAGGTTTGGCCTTCCCAGTGGGGGGTTCAAA ATGTGTTGGAAAGGTTGAAGACAATGCCTGAATTGGAGCAGAGCAAAAAGATGATGAACCAAGAGACTTTCCTAAAACAA ATGATCTTGAAGGCAAAAGACCAAATGGCAAAACAGAAGAAGGAAAACAGGGAGAAAGAGATGAATTTGCACATGTTTCG GTGCATCAATGCGGGGAAGGTCCTGCCCAACATGACCACGAATGATTTGAATGATCTTGCGTGGGTGATTGATCATAACC TGAAGGAGGTCGACCGAATGTTGGAAAAAATGAACAACACTGTGATTCACCAGGGTCGTTCTTCAATCTTAGCCGCTCCA AGTCCAATCCAACCCCAAATGGCACCAGCACTTACAGTAGCCAAGACCGAAGAAATGACTCTAGTGGATGATGTCCATGG GCTTGCCATGAATAATGCTGACGCCATTCAGAGACAGTGGTATGTGGATTTGATCAATGGTAATTATGGGAATGAGACAA TGACATTTGGAGATGCTAATCCCCAAAATGGATCATTTTGGCCCAACCCATAACTTTGGAAAAAGTAATGATGTACTTCT TAGCAATGCTCTTAGGGGCATGCATGATCTCTCCCAATTTAGTTTTATGATTTATGTTTTTAGTGCTTTTGCGGTGTGAA TGTGAAGACACAATATTAAGTCATTATGGTCTAGTAGTCTTCACATCTTTGTTTCATACATGCAAATAATTCATCATGTG CAGCTTAGGCTCACATGATTATTTCCTAGCTACTTCCAAAATCTTG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0042500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCAGGAGAAAGGTGAAACTTGCATTCATAGTCAATGACTCCGCAAGGAAGGCAACATACAAGAAAAGGAAGAAGGG TTTGATGAAGAAGGTGGATGAACTAACCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCCCATTCGATCCTC AACCTGAGGTTTGGCCTTCCCAGTGGGGGGTTCAAAATGTGTTGGAAAGGTTGAAGACAATGCCTGAATTGGAGCAGAGC AAAAAGATGATGAACCAAGAGACTTTCCTAAAACAAATGATCTTGAAGGCAAAAGACCAAATGGCAAAACAGAAGAAGGA AAACAGGGAGAAAGAGATGAATTTGCACATGTTTCGGTGCATCAATGCGGGGAAGGTCCTGCCCAACATGACCACGAATG ATTTGAATGATCTTGCGTGGGTGATTGATCATAACCTGAAGGAGGTCGACCGAATGTTGGAAAAAATGAACAACACTGTG ATTCACCAGGGTCGTTCTTCAATCTTAGCCGCTCCAAGTCCAATCCAACCCCAAATGGCACCAGCACTTACAGTAGCCAA GACCGAAGAAATGACTCTAGTGGATGATGTCCATGGGCTTGCCATGAATAATGCTGACGCCATTCAGAGACAGTGGTATG TGGATTTGATCAATGGTAATTATGGGAATGAGACAATGACATTTGGAGATGCTAATCCCCAAAATGGATCATTTTGGCCC AACCCATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0042500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTRRKVKLAFIVNDSARKATYKKRKKGLMKKVDELTTLCGIEACAIIYSPFDPQPEVWPSQWGVQNVLERLKTMPELEQS KKMMNQETFLKQMILKAKDQMAKQKKENREKEMNLHMFRCINAGKVLPNMTTNDLNDLAWVIDHNLKEVDRMLEKMNNTV IHQGRSSILAAPSPIQPQMAPALTVAKTEEMTLVDDVHGLAMNNADAIQRQWYVDLINGNYGNETMTFGDANPQNGSFWP NP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00432
1 60 60 6.4E-23
IPR002100
ProSiteProfiles
PS50066
1 49 49 16.568
IPR002100
SUPERFAMILY
SSF55455
2 94 93 4.06E-24
IPR036879
CDD
cd00266
2 85 84 7.09692E-20
IPR033897
PANTHER
PTHR11945
3 230 228 5.9E-65 –
PANTHER
PTHR11945:SF524
3 230 228 5.9E-65 –
PRINTS
PR00404
3 23 21 2.3E-8
IPR002100
Pfam
PF00319
10 50 41 1.9E-16
IPR002100
Gene3D
G3DSA:3.40.1810.10
13 119 107 3.2E-13
IPR036879
PRINTS
PR00404
23 38 16 2.3E-8
IPR002100
PRINTS
PR00404
38 59 22 2.3E-8
IPR002100
Coils
Coil
94 114 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000981
Molecular function DNA-binding transcription factor activity, RNA polymerase II-specific A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
Subterm of
GO:0000987
Molecular function Proximal promoter sequence-specific DNA binding Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter. The proximal promoter is in cis with and relatively close to the core promoter.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0042500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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