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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0044400 |
| Transcript ID | LotjaGi6g1v0044400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 2 subunit beta; TAIR: AT5G20920.1 eukaryotic translation initiation factor 2 beta subunit; Swiss-Prot: sp|P55871|IF2B_MALDO Eukaryotic translation initiation factor 2 subunit beta; TrEMBL-Plants: tr|A0A1J7HMN2|A0A1J7HMN2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0044400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8362848..8371050) extracted from Lotus japonicus Gifu genome v1.2.
TAGCACGCACCGTTTTGAAACGAGAAAGAAAAGGGTTTTTGATTCCAGAAAAACCAGACACAGCGATAGATAACAGTAAA CGGATTTCGCTCACTCTCTCCTTCGATCGCTGAATTTCGTATGCATCTTTTCCCTTCTCCACGCCAAAAATCGAATCTTT TCTTCATCATTGTTCAACCCTTTTGATCTTTTGTTCGTGCTGTGCGTATTCATATTTGATTTTTCTAGTTAGTCTCTGAT TATGTATTCATACTCACCCTGAGTTTGATGAAGCTCTTCTTCTTTGAAAATAGCAGCATACCATCATGTTTAATCTTAAA AAGTTGGCATTTTTGATTTGTTATTGCTATTAATCTTAACTTTTAGCTCACTGTTGTTTGTTTTTTTTTTTAATGTTGTT GTTCTTGTTGCTATTGAGTTATTGATCAAGAACAATAGGGATTTCAACTTAGAAGAATTAGAGCTATATGGGTTTGGCTA TAGGGGATTATTTCTTCACTGCATTTCCTTGATTTTGATATATGAAGCACGGTCCGTGTCTTGCTTTTTGGATTTTAGTC ATGTCGCAGTACCGGTGTCGTGTCCGGTGTCCGTGTCAGAGTCCGTGCTTCATAGATTTTGATTAATAATTTATTTTTTG ATATCTGCCTTATTGTTCTACATTCATCCTCTAGCTTGCTACTCCCCCAATATTGGAATTTAATAATTTTCGCTTTTCAT AGGTTTCAGTAACCATGGCAGATGAAGCACAGGCTGACCTGAAAGAGGAGGTTCCCGAAGTAAGTTTTCGTTCTTTGGTT TCTGTACTTTAATGCAATGTTACACTTGATTGGTTATGAGCCTTTGTAAACAAAGAGTTCTAAGTTATGTTGTATAAATT GCTGTTTTCTGATCATGGCATTTAATGTACAATGTTCCACCAAACTCCTTGATTTATTGGTACTTCTGTATTTTGGAGCT GTACTTCCTTTTTTAATGCATGGATTTCTTATTGCAGATTGTTCCATTTGATCCTACTAAGAAGAAGAAGAAGAAGAAAA TCACAATTGTAGATCCTGCTGATGATTCAGTGGACAAGCTGGCTGAGAAGACAGAAAATCTGTCAGGTATCCAAACTGAA ATAAGTTAATTTTCTAATGGTTTTTGACTTATCTACATTGCCGTTGCCTGAGGCATCTGTTATTGTTGATTCTAATAAGC GTTTAGATTACAGTTTCTGAAGGGGTTGAGAGCACATTCACTGGTTTAAAAAAGAAGAAGAAGAAGCCGGTAAGCCAATT GACTTTTTGTGGTTAACAATTTTGTATACCTGTTTAATAGCTTAAGTGTTTAAGATAGCTAGTTTTTTTTATTGGTTGGA AGCAACTTCACATACGATGCTTGTTGATTATAGGTTGAAATGAGTGCCTTAAATGATGAAAGTGTAGATGCTGTTGAAGA TTTGGATGGTAAGCAGTCGGTTGAGTGCATAAAAATTATTTGCCTGACCTTTTAAAGGCTTGCATGTTAGGTCCACCAAA TTAAAATAATGTCTTAACTCTTAAGTGAACTTCATTGAATGCTGAAGATACGATAAATTCTTTGCTTAGGTCCCATTGAA GAAGATGAAGAAGATGCCATACCCTTGCAACCTCGTTATCCTTGGGAAGGCAGTGATCGTGATTATGAATACGAGGAGGT ATAAATCATTTTACATGCTTACTCTAAAGTATTCCTCTCCTTAATTTGTCATTGTAAAACTATTTTCTAATGCTCTTATA TTCACCAAGTTCCAAAAAGGTTTCTGAACTGATTTTTTCATTTTATGTGATTCTGAATATATGGATTGTAGTTCTTGCGG ATCTTCCCTCTTATGTTGCCATATTAATTTTATAGGCTGTACTTGGGATCTACGACTGGGCTGTTGTTTTAGAATCTTTT GCATGCTTGAGATTTTTTGAACTTGAAAGCTTGTTAGCAATTGGTTTACACCCACCTCAAGTTTACATTTGATTTTATGG AGTCTAAATTAATTAATTTTAAGTGTTATTTATCCCTTGTTAGAAATCATAAGTTAGAACCACACAACACCACAAAACCT TAGGCTTAAGGCAATGGGTGTGTGTGTTCTTTATTATATATGCACTTGTGCACTTGCCAATCTAGGCAATGTAAGACTTC TTTGAGTCACCACTTTATTATCTCTATTACTCCCCCTCAATTGGGACTCCATTTTTTTTTTTGCCTGTGCCTTGCACTCC AGCGGGAACATCAGTGGTTGTTGGACTTGTGCTCCTTCGTTGAGTCTGCCTTTCGACTTTCTTTGTCTGGGCTAGTACTC TAGCGGGAACATCGAAGTTCCTTGGACTTGTGCTCCTTCGTCTGAGTCTGAGGCCTTGGCTTGCGCAAATGGGACTGCCA TTTTTGCTTTTTTTTTTTAATTTTTTTTCCGGATTTTTTTTTCATTTTTTTTTGGGAAGCGGAAGTCATGGCTTGCACCT AAGATACCCAGATTGAACCAGATTATTTCCAACTTTACTGCTCACTCAAGCTGAACCAGCTACCACCAAGCAAGCTCTCA AAGATCCTAAGTGGTTAGCTGCAATGAAGGCTGAATATGATGCATTGCTTGCTAACAATACATGGACATTGGTTCCACTT CCCAGGGATAGGAAGCCAATTGGTTGTAAATGGGTTTTTAGGGTGAAGGAAAATGCAGATGGCACCATCAATAGGTATAA GGCCAGACTTGTGGCCAAAGGTTACCATCAAGTCAAGGGGTTTGATTATTCAGAAACCTTTTCCCCTGTGGTGAAGCCTA TAACTATTAGGCTAATTCTTTCCCTGGCTATTACTAAGAGTTGGCATATTCATCAACTTGATGTGAATAATGCCTTTTTA AATGGAGCACTTCAAGAGGAGGTATACATGCAGCAACCAAGTGGATTTCAGCATGAAGACAAATCTCTTGTTTGCAGACT TAACAAAGCTCTTTATGGCCTTAAACAGGCCCCAAGAACTTGGTTTGACAGGTTGAAGTCAGCCCTTGTGAAGTATGGTT TTAAACCAAGTAGATGTGATCCATCTCTCTTCACTTTCTACACTCCAACTTGCTGCATCTACATATTAGTCTATGTAGAT GATATTATCATTACAGGCAATTCCTTGCCTCTGGTTCAGAAAGTAGTGCAGAACCTCAACTCTGAATTTTCCTTGAAGCA ATTAGGCCAACTTGACTACTTTCTTGGTGTTCAAGTGCATCACCTCAGGACAGGTCCTTGCTTTTGACACAAACTAAATA TATAACTGACCTTCTTGAAAGGGCAGAAATGGGAGAGGCCAAGGGGATCTCCACTCCCATGGTTAGTGGAGCAAAACTCA GCAAATATGGAGCAGATTACTTTGCTGATCCAACTCTCTATATATCAATAGTTGGTGCTCTCCAATATGCAACTTTAACA AGACCTGAGATCAGCTTTGCAGTTAACAAGGTCTGTCAGTTTCTAAGTCAGCCTCTAGAAGAGCATTGGAAGGCTGTTAA AAGGATCCTAAGATACCTTAAGGGTACTCTCTTTCATGGCCTGCACCTCAAGCCTTGTAGTTTGCACACTCCAGTCTCTC TTGTGGCCTTTTGTGATGCAGATTGGGGATCAGATCCTGATGACAGGAGATCCACCTCAGGCTCTTGTGTCTTTTTTGGT CCAAACCTTGTCTCTTGGAGCTCAAAGAAGCAAACCCTGGTGGCTAGATCGAGTACTGAAGCAGAATACAGGAGCCTAGC TAATACCTCTGCTGAACTGTTGTGGGTTCAGTCCCTTTTGCAGGAGTTGCAGATTCCTTTTCCTCCTCCTAGGGTGTTTT GTGATAACATGGGTGCAGTGGCTTTGACTCATAACCCAGTTCTTCACACTCGCACTAAACATATGGAGCTTGACATCTTC TTTGTGAGAGAAAAAGTTCTCAACAAGTCTCTTTTTGTGCATCACATTCCTTCTGTTGATCAGCTGGCAGATTTGTTTAC CAAGGCTCTATCACCACTTCGTTTTGAAACTCTTCGTGACAAACTCAATGTGATTGAGAAATCTCTTTCTCCCCCACCTT GAGTTTGAGGGGGCCTATTAGAGTAATATAGTTACTGCTATATTAGTGTTACTGTTAAGTGTCATTAGGTAAATGCTGAC TGTGTTATGTTCAGTTAGTTGTGCCTAGCTGGCAGGTTTGAGGGGGCTTATTAGAGTAATATAGTTACTGCTATATTAGT GTTACTGTTAAGTGTCATTAGGTAAATGCTGACTGTGTTCTGTTCAGTTAGTTGTGCCTAGCTGGCAGGTTTGTTAGAGA GTTAGTTACATGCTTAGCTGTCAAAGCTTAGCTGTCAAGGTTAGTTAGAGTTAGCTTCTTCTGCAAGCTAACAAATCTCA TAGTATAAATACTGTAATCTCTCTTGTATTCATCACCTTTTTCAATCAATGAAATTCAGTTGAAGATTTTCAACACTGTT GGTTGGTTCAGGAAGAGTCTTTTTTGTCTCACTTTATATCCAATTTTGTCAAAATCAAGATTTTACTTAGGTTTGTTTAT GTGGGTGAAAACTAGTAAATCGCAGGATTATAACATGTACATGTGCATAAAAAATAACTTCGATAAGGAAAATAACCTTT TAATCACCTCATAAAACTAAATTAAAATTTCATTAGCATAAGCTTAAATGCAACTCATTATAGTCATATATAACTCATGT TCTTCATAATAATAAGTAACAAAAGTTCATAACAAATCTTAAGCTCAAGAAAATAATCAACTGTCCAACTCTACTAGAGT AGACTACTACTCTATAATCTAAAATTGTAGATATCTAGCCTAGTATATCTGGGAAGCAAGCCCCAATCAGGATAGTCATT ATCCACCTGCTCATCCTTATCAATGGCATCCGCATCTACATCTTCACCTTCATCTACGAACATCCATATGGTCTACAGTT TCACTTGCACCACCAACACTACCACTAGATTCCTCTCTTTCTTCTCCAACTTGAATGTCTTCATCCAAATCCAAATTTGG ATTTTTATCATTCTTCTACCCCTATACCTCACCAGAAGCTCAGTATAATGCTCCTCCTATCACTCCATCCATGCCTCATT GCCATTTCTTCCAATAAGCTTTGTGATCATCCAGAATCTGTTTTTTCGTTTCAACTTTTTTTTCAAATATTTAACCTGAA TCTCATGGTAGGATGGTGTTTTAAATCCTATACCATGTCGGGCAAATAAGTCACACTGACATGTGTCCTGGAACTCTTCA CTTTTTGCCACCTGAAAAGGGACAACATTGTTAAAAAAAAGGAGGCAATTTTTAAGCATGCATCTTCCCTCTAACTCTTT TTGAAATGGAGTTGATGGCAGCTTGAGAGCTCACTCCCCTTTTATTGAAAAGGGTTGCTGGACTCTCAATTTCCTTCCTA TCTTGTTTCTTGATTCACCATTAGTCATACCACTGGCAGGTCCTTCACCCTCTTTTGTGTCTGACTTCTCTACGAATTTG TATTGTAACCCAACAACAATGTCCCACATTTGCTTCCTAACATCATAAGGAACAACTGGGCATGCTCCAACGTCTTTCTT AGTTTCTGCTAAGTGATCTTATGATGTATTGATTGTATTCACTCTCCTATATAAACCTTCTCACAGTATTTGCTTTTTAT TTTTTTCTCGCATCCCCATTCCCCATCAATAGATACCCCATGGTTCCAGGCCACAACAGTTGTGATTCTGGCGGCATTCT TGTGAATGTTAGATCCTCCTCCAATGGACCCAACCACAGACCCACTACCAGCAGCACTTGAGGACATGATTTCTCCTAAG ATAAAAGAAAAAAGCACAAAAGAAAGGCAAACGAAGAGCACAATTTAGAAGCAAAGAGAGATGAAAGAGGTGCAAATATG AAGAGTAAGAATCATATAATTTTGCAAAGCAGAGGAGTAAGGATTATACCAACATGATCTGCGAAACAGAGCACCAAAGA GAACCACGAACTTGTGCGTCAAAGTTGAACCAGAAACTGGGCAGAGCTTTGAACCACTTATGGCTGAGATTAAGGCTTTG AAATTGGGGAACGAGAGTTTCACTTTGTGCAAATGGGAGGGAAGGGGGGAAAGGGAGAAATAGTGAAAAATAATTAGGGA TCTAGCAAACAGGGTTGTGACACATCCATCAAGATCGTGTTCCCATGATCACAAAATGAAGATCGCATTGCTGAAGTGAT CTGCGGAGGTTGTGATTCCACCTTCGATCCAGCTAGGAGTCTGGCAATAAAAGTGGGATCGTGCGATCTCACAATCAATT GATCTTGACAATATTGTTCAAATCAATATTATGTGTTGAATGGTGTCATATAGTTTATATTTGTTCTTTACAATAGCTTC CTGAATTATTACCTAAACTATTTTTACTTTCTCTAGTTCTAGTTCTGCTTCTGCTTGGTCAAAACAATTTGCAATATCTT CTGATGTCTCCTCTAATATTGTGATATTTTTCTGCCTGTTAATTTTTCCCTTCTGCATTATAATGTTTTCCTGTACAGCT TCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAGCTTGCTGGAGACAGACGGAGGACTGTTATGAGGCCTC CGCAAGTTCTACGTGAGGGAACCAAGAAAACTGTTTTTGTGAATTTTATGGATCTATGCAAAACGTATGTTAATAGTATT ATGCACCTGTTGACATATTTTTCTATGTTGCATCAAAACTATTTTTTTCTGGCTTCAAACCTCTCCTTTTGCTGATGTAT TGCTGTCTGATCTTTTAGGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAACTGGGTACAAGTGGCT CCCTAGATGGACAGCAGAGGTTGGTAGTGAAGGGAAGATTTGCGCCAAAGAACTTTGAAGGAATCCTGCGGCGATACATC AGTAAGTATCTGGATGTTATTTGCATTGCTGTGTATGAACTATCAATATCAAGCCATAGGGGTAAATGTTGATCTATATT CTGTTTTTTCAGATGAATATGTCATTTGCTTTGGATGCAAAAGTCCTGACACTATACTTTCTAAGGAGAACCGTTTGTTC TTTCTCCGGTGTGAAAAGGTGAAATTTCTATGTGCCCATAGCCCCTCTTTCTTTCTCTCACTTCTAGGCTCTGAGCCTAC ACTATTTGCCCCATCCCCAGTCAAAGTAAGACGAAGGTTTCTGGCTTGGTGGTAATTTTACCAAGGTGCCTTCGCTGATT TGAAGGCTTTTGGTTCAATGGTGAATTAGTTTTGGTTCAGCTTCTCTAAATAATGTTTTATGTAATTTTATTCACCAACT TGAATTTTTATCACTCAGACTTAGTCTAGTTCTTAAAGCTTTTAGATACATGGAGTTCTTTCTTACATCTTTTTGTTACA AATAAGAAATACACACAGGAGGTAAATCTAATTATGGAAACTAGTGTGAAAGTGCTTCTAATTTTATCAAATCTCTAGAT AGGTCAAAGTAATTGGCCTTCTGATGTAGGTCATTGTAAGTACTCTTGGATATTTTATAATTTTGATTTGTTGCTTGCAG TGTGGATCAGGAAGATCAGTGGCTCCAATCAAAGCTGGTTTTGTTGCGCGTGTTGGCCGTAGGAACGCCGGGACATGATT TTATCTCTTTTTGTTGTTTTTATCTGAACATGTAGACTGGCTGGGGGAATGAACCATGTCCCAAAAAAGTTTAGCCTATG ATGCATACGTACTTCAGTTGAGTTTATTTCGGTACATTTTTTGTTTGCTTTCAGTTTACATGATGATTTTCCTTTGAGAC GTGTTGGTTATAAAAAATAAAAGACAACTCAGGTTTAATTAATTAAACTAAATCAATTAGCCTTTTGTCTTAAACTAAAT TGAAATCTGTAGTACAAACTCAGAAGCATGATGGAGACAGACAGACAGTGAGGTGCTTGGTGATGGTAATTTGGAACTTA GGGACGACACACAGGATAGGGCTATGTTTCTAATGTTTGTAGCTAGGGTCAAGAATAGAGAATTGAACGTCAAAAAATAT TAAGAATTGAGGAGTATGTTTCAATATGGCACCCCATTTCTAAGTATGGAGTCTATAAAATTCTTCATTTATACTTCAAC TAAAATTCAATTTTATTATTGAAATGAAAATAATTATTCTAGA
CDS sequence (LotjaGi6g1v0044400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATGAAGCACAGGCTGACCTGAAAGAGGAGGTTCCCGAAATTGTTCCATTTGATCCTACTAAGAAGAAGAAGAA GAAGAAAATCACAATTGTAGATCCTGCTGATGATTCAGTGGACAAGCTGGCTGAGAAGACAGAAAATCTGTCAGTTTCTG AAGGGGTTGAGAGCACATTCACTGGTTTAAAAAAGAAGAAGAAGAAGCCGGTTGAAATGAGTGCCTTAAATGATGAAAGT GTAGATGCTGTTGAAGATTTGGATGGTCCCATTGAAGAAGATGAAGAAGATGCCATACCCTTGCAACCTCGTTATCCTTG GGAAGGCAGTGATCGTGATTATGAATACGAGGAGCTTCTTGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAGC TTGCTGGAGACAGACGGAGGACTGTTATGAGGCCTCCGCAAGTTCTACGTGAGGGAACCAAGAAAACTGTTTTTGTGAAT TTTATGGATCTATGCAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTGCTTGCTGAACTGGGTACAAGTGG CTCCCTAGATGGACAGCAGAGGTTGGTAGTGAAGGGAAGATTTGCGCCAAAGAACTTTGAAGGAATCCTGCGGCGATACA TCAATGAATATGTCATTTGCTTTGGATGCAAAAGTCCTGACACTATACTTTCTAAGGAGAACCGTTTGTTCTTTCTCCGG TGTGAAAAGTGTGGATCAGGAAGATCAGTGGCTCCAATCAAAGCTGGTTTTGTTGCGCGTGTTGGCCGTAGGAACGCCGG GACATGA
Protein sequence (LotjaGi6g1v0044400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADEAQADLKEEVPEIVPFDPTKKKKKKKITIVDPADDSVDKLAEKTENLSVSEGVESTFTGLKKKKKKPVEMSALNDES VDAVEDLDGPIEEDEEDAIPLQPRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVN FMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICFGCKSPDTILSKENRLFFLR CEKCGSGRSVAPIKAGFVARVGRRNAGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 6.0E-139 | – | |
| PANTHER | 1 | 267 | 267 | 6.0E-139 | – | |
| SUPERFAMILY | 113 | 220 | 108 | 6.67E-33 | ||
| Pfam | 138 | 246 | 109 | 1.7E-39 | ||
| SMART | 138 | 247 | 110 | 7.4E-70 | ||
| Gene3D | 151 | 241 | 91 | 2.8E-34 | – | |
| SUPERFAMILY | 217 | 252 | 36 | 2.35E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi6g1v0044400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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